Gene

KWMTBOMO06124

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr11(-):749806-753204      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.395

CDS

ATGGACAGAGAAACATTTGAAAGTGATTTGTCGGGTGATCCGGCTGACGCCCGGCGCCTTTCGGTACCCGGGCCGGATGGTGTGAAGTATGCTACCGAAGCTTCCAAAGAGGCGAGCCTTCAGGCCTCTGCAGAAGGACATGCTACTGTTGGCACTAAAACTACAGGAAATAATTTCTCAATGCGATCCCATCAGCGCATTGGCACCTGGAACGTTAATGGGCTGCTTCAAGCAGGCAAATTGAGCATAGTGGACAAAGAAAGAGAGAATCATAACTTACCTATCTTGGGCCTCAGCGAAACACATATACGAGGCCAGGGACATTTCACGACTTCGTCAGGAAGCACACTTTACTTCTCCGGGTTAGAAGACTCTAGCCGGAGCGGCGTTGGAATACTTTTACCACGGAATATGAACAAATTTGTCCTCGGATACAATCCGGTATCGGATAGGATAATAACAATGAAGCTGAACACCAAACCCTGTCTCCTCAATATCGTTCAAATTTATGCTCCAACAGCTCAGTCCACGGAAGAGGATATCGATGGGTTTTACGATGCACTTGAAAAAACCCTAGACGATATTCCAAGTAGACAGATCACAGTAATCTTGGGAGACTGGAATGCCAAGATAGGTAACACAGAATCAATTCCAGAAACTAGCGACGTCATCGGGAAGTATGGTCTGGGCACTAGAAACGAACGTGGACAAAGGCTTGCGGAGTTCTGTATTGGTAGAGGTCTGAGTATTACGAATACAATGTTTCAGCACCATAAGAGGCGACTGTACACATGGAGATCTCCTGGCGATCGATTCAGAAACCAGATAGACTATGTATTAGTGGACAAGCGCTGGAGATCTTCCGTAAAAAATGTAAAGACCTTTCCTGGGGCCGAATGTGGTTCTGATCACACACTGCTCGTCGCCTTCTTCTCCCTCCGGCTTAAAGCTGTCCACCAAAACTCACGACTCAAACCTAGATCACTAAATCCAATAGAAGAAGCTCATTTTCGGAATTTGATTGAAACAAAGCTTGCCAAATCCCCTTTATCACTGACGGAGGATGCAGAATCTATGTGGATGAATCTGGAAAGTAAAATAAATGATGCCCTTGTAGATGTTACCTCTCAAAGAGAAAAAGATCCCAGGAGATCCACATGGATAACAGACCAAACATGGAGCCTAATCCAGCGCAGAAAAGATGTCAAAGTCAGAGGCCTACAGAATCCTGAGATACGTAGGGAATACTCTGAGATTTGTAAAGCAGTCCAAAGAGAATGCCGCAGAGACAAAAATAAATTTATTATGGGCATATGTCGAGAGGTGGAATCACACGCACTAAAGCTGCAAACTTCAGATCTGTTCAAGAAAGTCCGTCTGCTAAGTAGAAAATTCAAGCCCAAATCTTGGGTCATAGAAAACTCTGAAGGACTACCACTGCATGAACTGCACGAAATCACGGAACGCTGGCGTGGCTACTGTGAGCAACTCTATAAAGCTCCCCATGAATCTACCGAAAGCCGGTTCGACTGGAAAGATCTTGAATTGGAGCCTAATATTCTGAGATCAGAGGTAACGGGTGCAATCGACCGGCTCAAATCAAAGAAGGCTCCCGGACCTGACGATATCACATCGGAGATCCTCAAGGCTCTTGGTGACAATGGCTTGGATGTACTCCATAAGATTTGCAATCACGTATGGCAAAACGGTGAATGGCCCAAAAACTGGACGCGGTCTGTAATTATCCCACTGCACAAGAAAGGTTCAACTAGAAAATGTGATAATTACCGCACCCTGGCCCTCATCTCTCACGCTAGCAAAGTTCTTTTGCATGTAATAAACAGCAGGATTCGTTACTATTTGGACTGGCAAATCCCGCAGGAACAAGCTGGATTTGTAAAAGGCAAGGGCACGAGGGAGCAAATACTGAACGTGAGACAGATTGTGGAAAAGTGCTACGAATTCGACACGCCGGTCATCATGTGTTTCGTTGACTATAGTAAGGCTTTTGACTGTGTTGACTGGAACTGCTTGTGGGATGTCCTCACAGAGTTGGGGGTCCCTCGCCACCTTACTGCACTCCTTCAGTCATTATACTACAACAGCCAGGGAGTAGTGAGAATCGATAGGACTGCATCTGACTCGTTCAAATTTCACAAGGGCGTGCGGCAGGGCTGCATCCTGTCACCCATCCTGTTCAATATTTACGGCGAATACATCGTCAGGAAAACATGCGATGGATGGGATGGTGGTATTACCGTCGGAGGCTGTAAAATCTCTAACTTACGCTACGCTGACGACACCACTCTCCTGGCAGCCAGCGAAATCGAGATGAGCAAGTTCTTGGACAGGATGGAGCGCATTAGCAAAGACCTCGGACTCGCGATAAACAGATCTAAAACGAAGGTCATGATCGTTGATCGCACAGGCAGACTGGAGCTCAGCGGTACACTTAATTTAGAAGTAACGGACAACTTTGTTTACCTGGGCTCCAACATCAGCAACAATGGCTCTTGTGAACCGGAAATTCGTAGACGGATTGGGATGGCAAAAGGTGCCATGTCTCAGCTGGACAAAATATGGAAGGACAAAAATATCTCTATGAACACCAAGAGCAACCTAGTCCGCACACTAGTGTTTTCAATATTCATATACGGAGCAGAGACATGGACTATAAAGAAAGCTGACCGCAATCGGATTGATGCCTTCGAAATGTGGTGCTGGAGGAGGATGTTGGGTATTCCCTGGACCGCACGCCGCACCAATCTATCCATCCTAGCTCAGTTGAAGATCCGGACTAGACTCTCCACCATTTGCATGCGAAGGATTCTTGAATACTTTGGCCACATCGCAAGGAAAGACAGTGACAACTTAGAGAAATTGATGGTCACTGGAAAGGTCGAAGGCAAGCGACTAAGAGGCAGGAACCCGACCCGTTGGACGGACCAGATTCGTGCAGCCCTGGATACCACAGTGCACGATGCTCTGCACTCAGCTGCAGATAGGAACAGATGGCGGTGCACTATAAAAAACAATCTGTTTCAAGGCCATGACCACGACCCTCAGTAA

Protein

MDRETFESDLSGDPADARRLSVPGPDGVKYATEASKEASLQASAEGHATVGTKTTGNNFSMRSHQRIGTWNVNGLLQAGKLSIVDKERENHNLPILGLSETHIRGQGHFTTSSGSTLYFSGLEDSSRSGVGILLPRNMNKFVLGYNPVSDRIITMKLNTKPCLLNIVQIYAPTAQSTEEDIDGFYDALEKTLDDIPSRQITVILGDWNAKIGNTESIPETSDVIGKYGLGTRNERGQRLAEFCIGRGLSITNTMFQHHKRRLYTWRSPGDRFRNQIDYVLVDKRWRSSVKNVKTFPGAECGSDHTLLVAFFSLRLKAVHQNSRLKPRSLNPIEEAHFRNLIETKLAKSPLSLTEDAESMWMNLESKINDALVDVTSQREKDPRRSTWITDQTWSLIQRRKDVKVRGLQNPEIRREYSEICKAVQRECRRDKNKFIMGICREVESHALKLQTSDLFKKVRLLSRKFKPKSWVIENSEGLPLHELHEITERWRGYCEQLYKAPHESTESRFDWKDLELEPNILRSEVTGAIDRLKSKKAPGPDDITSEILKALGDNGLDVLHKICNHVWQNGEWPKNWTRSVIIPLHKKGSTRKCDNYRTLALISHASKVLLHVINSRIRYYLDWQIPQEQAGFVKGKGTREQILNVRQIVEKCYEFDTPVIMCFVDYSKAFDCVDWNCLWDVLTELGVPRHLTALLQSLYYNSQGVVRIDRTASDSFKFHKGVRQGCILSPILFNIYGEYIVRKTCDGWDGGITVGGCKISNLRYADDTTLLAASEIEMSKFLDRMERISKDLGLAINRSKTKVMIVDRTGRLELSGTLNLEVTDNFVYLGSNISNNGSCEPEIRRRIGMAKGAMSQLDKIWKDKNISMNTKSNLVRTLVFSIFIYGAETWTIKKADRNRIDAFEMWCWRRMLGIPWTARRTNLSILAQLKIRTRLSTICMRRILEYFGHIARKDSDNLEKLMVTGKVEGKRLRGRNPTRWTDQIRAALDTTVHDALHSAADRNRWRCTIKNNLFQGHDHDPQ

Uniprot

D7F163   D7F168   D7F172   D7F161   A0A2W1BNH4   D7F162   + More
D5LB39   D7F175   D7F167   D7F174   A0A3S3P648   A0A3Q1NFT8   A0A0J7KGF7   H2YWZ5   A0A3Q1MD43   A0A2J7PMJ3   A0A2J7RP47   A0A2J7QEJ0   A0A2J7QI56   A0A2J7PQA3   A0A2J7RLI7   A0A2J7RGX2   A0A2J7QGX8   A0A2J7R4R4   A0A2J7Q3T8   A0A3Q1MS18   A0A2J7QGT4   A0A2J7Q0C6   A0A2J7QKB0   A0A2J7QH51   A0A2J7Q2Z3   A0A2J7QGJ2   A0A2J7QUN7   A0A2J7Q5D5   A0A2J7PHM9   A0A2J7Q6A8   D5LB38   A0A2A4JBK9   A0A2V9X8L4   A0A2J7Q6P7   A0A076N1B6   A0A2J7QR01   A0A2J7REE7   A0A2J7PW81   A0A2J7PTY0   A0A076N3Z4   W5NGM3   W5MYT3   A0A2S2PMS6   A0A2B7ZXS2   A0A2J7PSH5   A0A146LUY8   A0A1W7RAL1   A0A2J7QCG2   A0A2J7PT27   A0A2J7QJJ9   A0A2J7PFC5   A0A2J7Q6T5   A0A2J7R8G1   A0A2J7RIL8   A0A2J7QUD0   A0A2J7QMC5   A0A2J7R901   H3J6U9   A0A2J7PX03   A0A2J7R8P5   A0A3S0Z3I7   A0A2J7Q7C6   A0A2B4R8E3   A0A2A4JXP9   A0A2B4RLZ4   A0A2J7PSI0   H3ABE5  

Pubmed

20470440    28756777    19393038    26823975    9215903   

EMBL

FJ265548    ADI61816.1    FJ265553    ADI61821.1    FJ265557    ADI61825.1    + More
FJ265546    ADI61814.1    KZ150025    PZC74827.1    FJ265547    ADI61815.1    GU815090    ADF18553.1    FJ265560    ADI61828.1    FJ265552    ADI61820.1    FJ265559    ADI61827.1    NCKU01004395    RWS06003.1    LBMM01007694    KMQ89503.1    NEVH01023985    PNF17546.1    NEVH01002141    PNF42599.1    NEVH01015309    PNF27009.1    NEVH01013959    PNF28275.1    NEVH01022640    NEVH01008218    NEVH01005885    PNF18513.1    PNF34430.1    PNF38481.1    NEVH01002684    PNF41704.1    NEVH01003750    PNF40091.1    NEVH01014359    PNF27813.1    NEVH01007402    PNF35815.1    NEVH01019064    PNF23230.1    PNF27789.1    NEVH01019971    PNF22037.1    NEVH01013275    PNF29009.1    NEVH01014358    PNF27914.1    NEVH01019075    PNF22955.1    NEVH01018372    NEVH01014371    NEVH01011208    NEVH01002697    NEVH01002552    PNF23678.1    PNF27673.1    PNF31697.1    PNF41592.1    PNF42118.1    NEVH01023960    NEVH01010501    PNF17732.1    PNF32290.1    NEVH01017570    PNF23798.1    NEVH01025135    PNF15828.1    NEVH01017534    PNF24114.1    GU815089    ADF18552.1    NWSH01001998    PCG69477.1    QIAP01000240    PYX61602.1    NEVH01017460    PNF24248.1    KF881087    AIJ27486.1    NEVH01012082    PNF31006.1    NEVH01005277    PNF39212.1    NEVH01020937    PNF20581.1    NEVH01021219    PNF19787.1    KF881086    AIJ27485.1    AHAT01008485    AHAT01017643    GGMR01018096    MBY30715.1    PDHN01000949    PGH37547.1    NEVH01021931    PNF19256.1    GDHC01007098    GDHC01001590    JAQ11531.1    JAQ17039.1    GFAH01000222    JAV48167.1    NEVH01016289    PNF26277.1    NEVH01021921    PNF19488.1    NEVH01013553    PNF28765.1    NEVH01025668    PNF15041.1    NEVH01017452    PNF24293.1    NEVH01016335    NEVH01006721    PNF25462.1    PNF37115.1    NEVH01003500    PNF40666.1    NEVH01011186    PNF32183.1    NEVH01013215    PNF29703.1    PNF37310.1    AAGJ04118689    AAGJ04161747    NEVH01020865    PNF20863.1    PNF37211.1    RQTK01002506    RUS68506.1    NEVH01017443    PNF24485.1    LSMT01001244    PFX12648.1    NWSH01000469    PCG76200.1    LSMT01000478    PFX17357.1    NEVH01021928    PNF19298.1    AFYH01236276   

Proteomes

UP000285301    UP000009136    UP000036403    UP000007875    UP000235965    UP000218220    + More
UP000247801    UP000018468    UP000007110    UP000271974    UP000225706    UP000008672   

PRIDE

D7F163    D7F168    D7F172    D7F161    D7F162    D5LB39    + More
D7F175    D7F167    D7F174    D5LB38   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF03372   Exo_endo_phos

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR002138   Pept_C14_p10       
IPR000637   HMGI/Y_DNA-bd_CS       
IPR027124   Swc5/CFDP2       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

D7F163   D7F168   D7F172   D7F161   A0A2W1BNH4   D7F162   + More
D5LB39   D7F175   D7F167   D7F174   A0A3S3P648   A0A3Q1NFT8   A0A0J7KGF7   H2YWZ5   A0A3Q1MD43   A0A2J7PMJ3   A0A2J7RP47   A0A2J7QEJ0   A0A2J7QI56   A0A2J7PQA3   A0A2J7RLI7   A0A2J7RGX2   A0A2J7QGX8   A0A2J7R4R4   A0A2J7Q3T8   A0A3Q1MS18   A0A2J7QGT4   A0A2J7Q0C6   A0A2J7QKB0   A0A2J7QH51   A0A2J7Q2Z3   A0A2J7QGJ2   A0A2J7QUN7   A0A2J7Q5D5   A0A2J7PHM9   A0A2J7Q6A8   D5LB38   A0A2A4JBK9   A0A2V9X8L4   A0A2J7Q6P7   A0A076N1B6   A0A2J7QR01   A0A2J7REE7   A0A2J7PW81   A0A2J7PTY0   A0A076N3Z4   W5NGM3   W5MYT3   A0A2S2PMS6   A0A2B7ZXS2   A0A2J7PSH5   A0A146LUY8   A0A1W7RAL1   A0A2J7QCG2   A0A2J7PT27   A0A2J7QJJ9   A0A2J7PFC5   A0A2J7Q6T5   A0A2J7R8G1   A0A2J7RIL8   A0A2J7QUD0   A0A2J7QMC5   A0A2J7R901   H3J6U9   A0A2J7PX03   A0A2J7R8P5   A0A3S0Z3I7   A0A2J7Q7C6   A0A2B4R8E3   A0A2A4JXP9   A0A2B4RLZ4   A0A2J7PSI0   H3ABE5  

PDB

5J8N     E-value=0.000347929,     Score=108

KEGG

105841557    no KO assigned | (RefSeq) uncharacterized LOC105841557

GO

GO:0003964   GO:0004519   GO:0004197   GO:0006355  

PANTHER

PTHR23227  

Length:

1022

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.18346

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00004

outside

1  -  1022

 

 

Pi

288.677696

Theta

222.208863

Tajima's D

-1.008846

CLR

479.917567

CSRT

0.137893105344733

Interpretation

Uncertain