Silkworm Genome Informatics Database

Gene

KWMTBOMO06123 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001738

Annotation

PREDICTED:_zinc_finger_protein_Xfin-like_[Amyelois_transitella]

Location

Bomo_Chr11(+):729925-737031 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 4.5

CDS

ATGGCAGATGAGGAGAGATTTGTTAATGTCGTGCCGTATAGTAAAATAAAGCAAGAAATAATTGTAAATGATGAAGATGATGTGGTCAATTGTCGCCTATGCGGAAAAGGTTTTGTAAGTCAAATAGCACTGACAAACCACGCTCGAATGGAGCACATAGATTCTTACGCAACTGGTGATCCAAGTATTTGGACGGAAACAAAGATATTCATCAACAATGAAAAGCCCATACCAAATGGAAAGATGAAAATTGATGAGGACCTTGTTAAAATTAAAACCGAAGAAGTTATATCCTCGTTAGAGCCGACCAACATAATGGACCTGGCCTCTAAAGACGTCAGCTACATAATCCTGAAGGCGGACGGAACTCAACCCAAGAAGAAAAAACCTGAAGCCAAGAGTGAGAAAGTGCAGAAGATAGCATCAAGGAGAAACAGAGAAACGAAAGTTATTACAGGCCCATTTGAATGTCTTCAGCCGTCTACGTGTCAGCAGCTGACCGGCGGCGATGGTCTCTGTCATCAGATCTTCTTCTCATGTTGTGAATATTCTCTGCACCACCGAGATGAGCACACTAAGAGGCGGAAAGGAATTCGCTGTCAAGTCTGCGAGAAACCAATGTCTGTAGATGCTGTACAGTTTCCTTTCAACTGTGAGACATGCGGCGAAGGCTTCCACGATGAGAACGAATATATAACTCACACCGCTATAGGGCACGTGAAACTGAAGCCGTTTGAATGTAACATTTGTCATAAAAGATTCACTCAACAGGGTGGCCTCATGCAACACATGAGGATGCATACGGGTGACCGTCCCTACCCGTGCAATTACTGCCCAAAATCCTTCACCCAGAAGTCCGGACTGGACCAGCACCTCCGGATTCACACTAAAGTGAAGCCTTATCGCTGCGTCATCTGCTCGAAGACGTTCTGCCAATCGGTCCACTTGAAGCAACACATGAGAACGCACACAAACGTGGCCCCGTTCCAATGCGGCATCTGCGAGAAACGCTACAAGCAGAGCAGCCATTTAAATTACCACCTGAAGAACCACAATCCGGCCAATTTGACAGAGGAACAACGTGCTAAATACGCTGAACTCATCGGACTGATAAGCAAGGAAGTTGTCGAAGTCCAAATCGATTCAAACGAACAGATATTGCCCTATGATAATTCTAACATGGTCACCGACGAGCAATTCGTGCAAACTTGGGCGGAGCAGAATTGTCAGAGTTGA

Protein

MADEERFVNVVPYSKIKQEIIVNDEDDVVNCRLCGKGFVSQIALTNHARMEHIDSYATGDPSIWTETKIFINNEKPIPNGKMKIDEDLVKIKTEEVISSLEPTNIMDLASKDVSYIILKADGTQPKKKKPEAKSEKVQKIASRRNRETKVITGPFECLQPSTCQQLTGGDGLCHQIFFSCCEYSLHHRDEHTKRRKGIRCQVCEKPMSVDAVQFPFNCETCGEGFHDENEYITHTAIGHVKLKPFECNICHKRFTQQGGLMQHMRMHTGDRPYPCNYCPKSFTQKSGLDQHLRIHTKVKPYRCVICSKTFCQSVHLKQHMRTHTNVAPFQCGICEKRYKQSSHLNYHLKNHNPANLTEEQRAKYAELIGLISKEVVEVQIDSNEQILPYDNSNMVTDEQFVQTWAEQNCQS

Uniprot

H9IWV5 A0A2A4IUN0 A0A2H1V0R4 A0A2A4ITU3 A0A0N1PF71 A0A0N0PG61 + More
A0A212F818 A0A2A4JZ80 H9JRW5 A0A2H1W1G9 A0A212EP26 A0A3S2PJC5 A0A194PEX2

Pubmed

19121390 26354079 22118469

EMBL

BABH01020996 BABH01020997 NWSH01007082 PCG63098.1 ODYU01000153 SOQ34440.1 + More
PCG63099.1 KQ458725 KPJ05373.1 LADJ01064520 KPJ21652.1 AGBW02009805 OWR49887.1 NWSH01000394 PCG76720.1 BABH01017026 ODYU01005688 SOQ46796.1 AGBW02013565 OWR43211.1 RSAL01000015 RVE53107.1 KQ459605 KPI91827.1

Proteomes

UP000005204 UP000218220 UP000053268 UP000053240 UP000007151 UP000283053 + More

PRIDE

H9IWV5 H9JRW5

Pfam

PF00096 zf-C2H2 + More
PF00179 UQ_con

Interpro

IPR013087   Znf_C2H2_type        + More
IPR036236   Znf_C2H2_sf
IPR000608   UBQ-conjugat_E2
IPR016135   UBQ-conjugating_enzyme/RWD

SUPFAM

SSF57667 SSF57667 + More
SSF54495 SSF54495

Gene 3D

3.10.110.10

ProteinModelPortal

H9IWV5 A0A2A4IUN0 A0A2H1V0R4 A0A2A4ITU3 A0A0N1PF71 A0A0N0PG61 + More
A0A212F818 A0A2A4JZ80 H9JRW5 A0A2H1W1G9 A0A212EP26 A0A3S2PJC5 A0A194PEX2

PDB

2I13 E-value=2.71432e-24, Score=278

KEGG

101743248 no KO assigned | (RefSeq) zinc finger protein 235-like

GO

GO:0003676 GO:0046872 GO:0016567 GO:0005975 GO:0030246 GO:0004559 GO:0006013 GO:0015923 GO:0005634 GO:0006260

Length:

411

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00018

Exp number, first 60 AAs:

0.00018

Total prob of N-in:

0.00770

outside

1 - 411

Pi

298.730207

Theta

190.386352

Tajima's D

1.682591

CLR

0.378593

CSRT

0.827608619569022

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics