Gene

KWMTBOMO06121

Pre Gene Modal

BGIBMGA001737

Annotation

PREDICTED:_E3_ubiquitin-protein_ligase_Rnf220_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr11(+):709405-720759      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.937

CDS

ATGTACAATAACATGGAGGGCTGTTCGAATAACGTGAATGAGCATAATACTAATTACGGGCAAATATACGACGAGAATGTAATATTAAATAGTGTTAGAAGTAGAAAAAAAGTTAGTGAATTACCGAATTGTCCGGTGTGTAGTTGTACCGTGCGTCAAGGTGAATTGGAACATCATTTAGATTTGGAATTAGCTAGGCTCAACAAACTCACCGGCAGTGCTTCGAAAAGGAAATTAAGTGTAAATAGTGTTAGTAACAATGTTAATGCAGCTGTTCCCGGATCCAGTACAAACGTTGAACTTGATGAAGGTATCGATGTCACAGGGTGTCCCGGCAGCGATGTTTACCAGCGAGTACACGCGAACCGCCTCCGCCGTCTCCGGGCTCGTCGGAGAAGCACTCCTCCCCCACAAAATGGAGAGTGTCCTGTTTGCAATACAACCTTACCAACCTCCAAACTACAGAGGCACGCCTTGAGGTGCCTCAAGAGAACAGGAGCAGAGATGGATGAAGACATACCTGATACCAGCTCGGAGGAGGGCAGCATCGACGTAGAAAATGACGAACCTTCAGCCAGCGGGTTTGGTGCTGAATACCAGTGGTGCGGTGAGTGGAGGGTCAGAGCGACGGCTCTGCAGGATGCGGATTCAAGGGCAGCCACATGTGTCCGTAGGGCTTCCAATGATCAAGCGCTGGTGGTGGATGGTGATGAAGACACAGAGCTGTATGGACCGCCGCAGTATTCTCCGTCTCGGATAGCACCCGATGATGAACATCAAACGAACGAAGATCAGACTGATATGCAAACAACCAATGAAACTGAGACTGAAGATAGAATTGAAGAGCCAACTCCCAAATGCAACGGCTTAGTGGAAGCCAGCGCTGAGACAAGGATCCAGGCTTTAAAGGCGAAAATAAAGGATATGGAGAAGAAACAGAACGGTGCCGCAGAGTCAAAGTGTCTTATATGTCTCGGGTCATACGTGTCTCCGGCCGTCTCAATACAGTGCTGGCATGTCTACTGTGAGGTCTGCTGGCTGGAGTCGTTGAAAGCCAAGAAGATATGTCCGCAGTGCAACGCCATCACCACCGCTCAGCATCTGAGAAGGATATACATGTGA

Protein

MYNNMEGCSNNVNEHNTNYGQIYDENVILNSVRSRKKVSELPNCPVCSCTVRQGELEHHLDLELARLNKLTGSASKRKLSVNSVSNNVNAAVPGSSTNVELDEGIDVTGCPGSDVYQRVHANRLRRLRARRRSTPPPQNGECPVCNTTLPTSKLQRHALRCLKRTGAEMDEDIPDTSSEEGSIDVENDEPSASGFGAEYQWCGEWRVRATALQDADSRAATCVRRASNDQALVVDGDEDTELYGPPQYSPSRIAPDDEHQTNEDQTDMQTTNETETEDRIEEPTPKCNGLVEASAETRIQALKAKIKDMEKKQNGAAESKCLICLGSYVSPAVSIQCWHVYCEVCWLESLKAKKICPQCNAITTAQHLRRIYM

Uniprot

A0A2H1WPM2   A0A2A4J593   A0A194QM73   A0A2W1BHM4   A0A194Q4J6   I4DNQ2   + More
A0A1W4X5W4   A0A1S3KAW3   A0A1S3J6W2   A0A1S3KBX9   A0A1S3J803   A0A0K8TLX3   A0A1S3J6H3   A0A2J7Q3D7   A0A1J1IDQ8   A0A336LIU9   A0A1Y1NMY1   K1RCB3   A0A1A9ZHM3   D6W7T2   A0A1B0G7Y4   A0A0L8I1N2   A0A1A9VB95   A0A1S3R113   A0A0B6ZZ17   A0A182IT55   A0A0B6ZYV4   A0A2G8K666   A0A1A9WJA2   A0A0P5L632   A0A0P5I3A6   A0A0P5PRL6   A0A0P5Q1D2   A0A0P5I4M3   A0A0P6E539   A0A0P6CFU3   A0A0P5MB27   A0A0P6EMD3   A0A0P6G0P4   A0A182VXZ9   A0A2T7NR28   A0A182P7D2   A0A084VZN5   A0A1A9XGA3   A0A182R5S2   A0A1B0BNL6   B0WZT3   A7RT50   A0A0L7R270   R7VG23   A0A182JVW2   A0A1B6HME7   T1GJE7   L9KI33   A0A1L8DT86   H2MB42   U4UVK4   N6T8W7   Q5F338   E2BBG2   A0A1Q3F0S4   G1KWN1   Q170U5   A0A2P8YUG4   A0A182SR33   A0A3B1KF10   A0A3Q3M6M5   A0A3B4BTT9   A0A0A1XMJ2   A0A3Q2W0X9   A0A250YE63   A0A3P4S2J8   A0A061IKA9   A0A3B1JRJ4   A0A1S3R108   A9UMS7   A0A1S3R117   Q08B47   A0A0M3QXK0   A0A3Q4HMZ4   G3WF89   A0A060VNU0   Q28CJ2   L5KQB9   G3QE43   A0A182TQR2   A0A2Y9QLT1   A0A2U4BK79   A0A2I2ZCM9  

Pubmed

26354079    28756777    22651552    26383154    26369729    28004739    + More
22992520    18362917    19820115    29023486    24438588    17615350    23254933    23385571    17554307    23537049    15592404    15642098    20798317    17510324    29403074    25329095    25830018    28087693    23929341    25186727    21709235    24755649    20431018    23258410    22398555   

EMBL

ODYU01010126    SOQ55019.1    NWSH01003321    PCG66562.1    KQ461198    KPJ06060.1    + More
KZ150196    PZC72326.1    KQ459463    KPJ00467.1    AK403076    BAM19542.1    GDAI01002668    JAI14935.1    NEVH01019068    PNF23104.1    CVRI01000047    CRK98352.1    UFQS01000022    UFQT01000022    SSW97626.1    SSX18012.1    GEZM01002173    GEZM01002172    JAV97347.1    JH817473    EKC38875.1    KQ971307    EFA11345.1    CCAG010010579    KQ416751    KOF95403.1    HACG01026988    CEK73853.1    HACG01026989    CEK73854.1    MRZV01000846    PIK43500.1    GDIQ01176148    JAK75577.1    GDIQ01219546    JAK32179.1    GDIQ01145470    JAL06256.1    GDIQ01122877    JAL28849.1    GDIQ01223637    JAK28088.1    GDIQ01068317    JAN26420.1    GDIP01015917    JAM87798.1    GDIQ01162519    JAK89206.1    GDIQ01060505    JAN34232.1    GDIQ01051258    JAN43479.1    PZQS01000010    PVD23627.1    ATLV01018895    KE525252    KFB43429.1    JXJN01017459    DS232217    EDS37758.1    DS469536    EDO45396.1    KQ414666    KOC64975.1    AMQN01000717    KB294417    ELU14630.1    GECU01031857    JAS75849.1    CAQQ02074484    CAQQ02074485    KB320836    ELW62154.1    GFDF01004405    JAV09679.1    KB632384    ERL94281.1    APGK01047133    KB741077    ENN74148.1    AADN05000647    AJ851812    CAH65446.1    GL447043    EFN86969.1    GFDL01013885    JAV21160.1    CH477468    EAT40460.1    PYGN01000354    PSN47877.1    GBXI01002202    JAD12090.1    GFFW01002880    JAV41908.1    CYRY02044894    VCX40098.1    KE668267    ERE84077.1    BC157775    AAI57776.1    BC124879    AAI24880.1    CP012526    ALC45999.1    AEFK01152654    AEFK01152655    AEFK01152656    AEFK01152657    AEFK01152658    AEFK01152659    AEFK01152660    AEFK01152661    AEFK01152662    AEFK01152663    FR904263    CDQ56486.1    AAMC01000010    AAMC01000011    AAMC01000012    AAMC01000013    AAMC01000014    AAMC01000015    AAMC01000016    CR926349    CAJ81726.1    KB030630    ELK13131.1    CABD030002856    CABD030002857    CABD030002858    CABD030002859    CABD030002860    CABD030002861    CABD030002862   

Proteomes

UP000218220    UP000053240    UP000053268    UP000192223    UP000085678    UP000235965    + More
UP000183832    UP000005408    UP000092445    UP000007266    UP000092444    UP000053454    UP000078200    UP000087266    UP000075880    UP000230750    UP000091820    UP000075920    UP000245119    UP000075885    UP000030765    UP000092443    UP000075900    UP000092460    UP000002320    UP000001593    UP000053825    UP000014760    UP000075881    UP000015102    UP000011518    UP000001038    UP000030742    UP000019118    UP000000539    UP000008237    UP000001646    UP000008820    UP000245037    UP000075901    UP000018467    UP000261640    UP000261440    UP000264840    UP000030759    UP000092553    UP000261580    UP000007648    UP000193380    UP000008143    UP000010552    UP000001519    UP000075902    UP000248480    UP000245320   

Pfam

PF15926   RNF220        + More
PF00246   Peptidase_M14
PF18027   Pepdidase_M14_N

Interpro

IPR001841   Znf_RING        + More
IPR031824   RNF220_mid       
IPR040178   RNF220_RING       
IPR013083   Znf_RING/FYVE/PHD       
IPR006642   Znf_Rad18_put       
IPR040626   Pepdidase_M14_N       
IPR000834   Peptidase_M14       

Gene 3D

3.30.40.10    

CDD

cd16563  RING-HC_RNF220

ProteinModelPortal

A0A2H1WPM2   A0A2A4J593   A0A194QM73   A0A2W1BHM4   A0A194Q4J6   I4DNQ2   + More
A0A1W4X5W4   A0A1S3KAW3   A0A1S3J6W2   A0A1S3KBX9   A0A1S3J803   A0A0K8TLX3   A0A1S3J6H3   A0A2J7Q3D7   A0A1J1IDQ8   A0A336LIU9   A0A1Y1NMY1   K1RCB3   A0A1A9ZHM3   D6W7T2   A0A1B0G7Y4   A0A0L8I1N2   A0A1A9VB95   A0A1S3R113   A0A0B6ZZ17   A0A182IT55   A0A0B6ZYV4   A0A2G8K666   A0A1A9WJA2   A0A0P5L632   A0A0P5I3A6   A0A0P5PRL6   A0A0P5Q1D2   A0A0P5I4M3   A0A0P6E539   A0A0P6CFU3   A0A0P5MB27   A0A0P6EMD3   A0A0P6G0P4   A0A182VXZ9   A0A2T7NR28   A0A182P7D2   A0A084VZN5   A0A1A9XGA3   A0A182R5S2   A0A1B0BNL6   B0WZT3   A7RT50   A0A0L7R270   R7VG23   A0A182JVW2   A0A1B6HME7   T1GJE7   L9KI33   A0A1L8DT86   H2MB42   U4UVK4   N6T8W7   Q5F338   E2BBG2   A0A1Q3F0S4   G1KWN1   Q170U5   A0A2P8YUG4   A0A182SR33   A0A3B1KF10   A0A3Q3M6M5   A0A3B4BTT9   A0A0A1XMJ2   A0A3Q2W0X9   A0A250YE63   A0A3P4S2J8   A0A061IKA9   A0A3B1JRJ4   A0A1S3R108   A9UMS7   A0A1S3R117   Q08B47   A0A0M3QXK0   A0A3Q4HMZ4   G3WF89   A0A060VNU0   Q28CJ2   L5KQB9   G3QE43   A0A182TQR2   A0A2Y9QLT1   A0A2U4BK79   A0A2I2ZCM9  

PDB

2H0D     E-value=0.00588784,     Score=93

KEGG

101743099    no KO assigned | (RefSeq) E3 ubiquitin-protein ligase Rnf220

GO

GO:0046872   GO:0004842   GO:0016874   GO:0003677   GO:0006281   GO:0008270   GO:0004181   GO:0005515   GO:0016567   GO:0005975   GO:0030246   GO:0004559   GO:0006013   GO:0015923   GO:0005634   GO:0006260  

Length:

373

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01335

Exp number, first 60 AAs:

0

Total prob of N-in:

0.05253

outside

1  -  373

 

 

Pi

220.658927

Theta

157.843537

Tajima's D

2.146388

CLR

1.107884

CSRT

0.902554872256387

Interpretation

Uncertain