SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO06118  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA001735
Annotation
PREDICTED:_altered_inheritance_of_mitochondria_protein_21_isoform_X1_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 2.827
 

Sequence

CDS
ATGAAAATTCCGGAGACATCTGCCAACGTCGGTGCTTATTACGGCAATGAAGAAACTGGCCAGTGGCAGCCCAACGGTGTGATCCTGGATGGTGGGGTGGGCGGCGGTGTGGTCGGTAGTGGTGATGCAGGCATCCATAGGCCCCCCGTCTATCCTGTACACATACCTAGAGGACCTATGCCAGCTGGATTTGTAATGGCCGGGGCCTATTATCCACCAGCACCGTATCCTCCAGTTCCAGCTCAACCTCAAGATGACTTTGCTGATTACATGTGGATGGAGAATGAAGAAGAATTTGATAAACAGGTCATGCAACAGCTGGAAGAGGAAGCCTTAATGGAACAGTGCATCGAAGCTATGCTGGAAGATGAGCAGAGGGAGAGACAGAATCGGCCAGTAACGAATGGACACAAGCATTATCCTACGACAAGTAACAGTGGCCCTACAATCTCCCTTGAAGAAGCTGTCTCGAGATCAACCCTAAACCCCCTGGCTGCAGAATTTGTACCGAGCCAATCAAGGTTACCAACACACAGCAAACAGACTACAGAAGAGAAGACAGAACAATTACCAGTTCAAGTGCAAGAATCAAGAGACAGTCCAGAGAGTTGTACAGTCTCGTCTCCGGATCCTGAACCAATTGTGGAAAAGACTGAAGTTTCTCTGGAACCTCAAACTGAAGAGCCAGAGAAGACTCAGCCAGAACCAACGCCCAGTTCCGTGGAAGTTCCACAAGAGAAGGCGGAGAAGCGGCCGAAAGAGATTAAAAAAGAAGTCAAACCCAAATCCGAAGCTAAAAAACCCATCAAAGTTGATACGAAACCTAAAATCGTGAAAGCCGAAGTTAAAGTTCCCGTTAAAAAAAAGGAAGTGAAAAGTGTTAAAAGTGACTGTGAGAGTGGCATTAGTGATGGTGATCGGACAGAGGAGGTAGTCGAGACGAGTAAGCCCCAAAACCAACCGACCGAGGAACTTCCCAGCTCGGGCTTCAAGCCGATAAACTATGCCGCAGCAGCGAAAGCTAACAAGCCCAAGAAACCGAGCGTGACCGCCACACCTGCCACTGCTGCCGCCCCCAGCGGGCCCACGGCAGAGAAGACCCCACCGACGAACCAGAAACCGAAGACAGCCGAGAAAAAAGACAAGAAACTAGATAAGGTCCCGTCGAAAATTGATAAACCAATCGTACAAAGGAAAAATTCTACCAAGTAA
Protein
MKIPETSANVGAYYGNEETGQWQPNGVILDGGVGGGVVGSGDAGIHRPPVYPVHIPRGPMPAGFVMAGAYYPPAPYPPVPAQPQDDFADYMWMENEEEFDKQVMQQLEEEALMEQCIEAMLEDEQRERQNRPVTNGHKHYPTTSNSGPTISLEEAVSRSTLNPLAAEFVPSQSRLPTHSKQTTEEKTEQLPVQVQESRDSPESCTVSSPDPEPIVEKTEVSLEPQTEEPEKTQPEPTPSSVEVPQEKAEKRPKEIKKEVKPKSEAKKPIKVDTKPKIVKAEVKVPVKKKEVKSVKSDCESGISDGDRTEEVVETSKPQNQPTEELPSSGFKPINYAAAAKANKPKKPSVTATPATAAAPSGPTAEKTPPTNQKPKTAEKKDKKLDKVPSKIDKPIVQRKNSTK

Summary

Uniprot
Pfam
PF07145   PAM2
Interpro
IPR009818   Ataxin-2_C        + More
IPR040396   PAIP2-like       
ProteinModelPortal

Ontologies

Topology

Length:
403
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00954
Exp number, first 60 AAs:
0.00499
Total prob of N-in:
0.01602
outside
1  -  403
 
 

Population Genetic Test Statistics

Pi
165.177189
Theta
159.886116
Tajima's D
-0.505878
CLR
0.214776
CSRT
0.240837958102095
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
27530593 REEMSEGLPKPHNPAEHDSESDGEYKA 100.00 3e-07
26822097 HYPTTSNSGPTISIEEAVSR 100.00 8e-06
26280517 DSPDCYFYSIAR 100.00 8e-06
28556443 SGYIDVLK 100.00 4e-04
Copyright@ 2018-2023    Any Comments and suggestions mail to:zhuzl@cqu.edu.cn   渝ICP备19006517号

渝公网安备 50010602502065号