Silkworm Genome Informatics Database

Gene

KWMTBOMO06112

Pre Gene Modal

BGIBMGA001692

Annotation

PREDICTED:_intersectin-1_isoform_X3_[Bombyx_mori]

Location

Bomo_Chr11(-):602206-626334 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.658

CDS

ATGATGGCGGACCCGTGGACTATACAAGCACATGAGCATGCGAAGTTCTCGGAGCACTTTAGAAACCTTGGACCTGTCAATGGAAATTTGACGGGCGAACAAGCTAAAAGATTCATGTTACAGTCTCAGCTTCCTCCACCGGTCTTGGGACAAATATGGTCACTGGCGGACACGAACGCCGACGGTAAGCTGGATTTGAAGGAGTTCTCTATAGCTTGCAAGATTATAAACTTGAAACTGCGCGGCTTAGAGGTGCCGAAGATGCTTCCACCATCTCTGATCGCCTCTTTAAGCCCCACAGGAGGCCAATCGCAACAGGTCGTTCCGCCGGCGAAACCAGCCATTCCGCCCCTGCCCAACATACCTCCCCAACCTCTGATCTCCGGTCTATCGCCCACTCAACCGTCCAACCAGTCGTTGCTCGGTGATTTCGGCTCCGGTCAGCCGCTGATCCAACCTTTGGTCCAGCCCGTCAAACCGCCCGTCAGTACGGTGCCGGATCTGATCTCCGGCGTGAAGCCGTTGTCGCAATCCTTGCTAGACTCCCCACCCATGGCCCCCACTGTTCAGCCGTTGATTGGCACTGTCCAGCCATTAATCGGTCCAGATCCACTGATGGGCAGCGTCCAACCCCTGATTGGCTCCCAGCCACTGGCCGGACCCACGCCCCTAGTGAGCTCACCCCAAACTCTAGTCAATTCATCACCATTAGTCTCGTCACAGCCGATTATGTCCAGCCAGCCGTTAATTAGTGCTTCTACGATCTCCGCACAACCTCTTGGAACAATGCAGCCCCTGATAGGGACCGCTCCACCTATTATGGGAGCGACTCAGGCCCTGATCCAGTCTCCCCCCCTGTCTGGTCCGCAACAACCCGCGCCGGTCACGGCCGCGTCGTTTGGGGGTAGTCCCCCGCACCCGGTGGTCGCAGCTTCGGTTCCCGGACAGCCGGTGACGTCTACGCCGATCGCGGCTCTGAACAAAGAGGTCATATCGAAACCAGGATCCGTAGTGACGAGTCCCGAAGTCCCGATGGGAGTGATGAGCCCCCCTCCCATGGAGTGGGGGGTGCCGCAGCCACAGAAACTCAAGTACACGCAGCTGTTCAACGCCACTGACCGCGCGAAGACCGGATCCGTTTCCGGGACGCAGGCGAGGTCCATCATGCTGCAGTCCAGACTCCCACAGCAAAGCCTGGCCCAGATCTGGGCGCTGGCCGATCTGGACGCCGATGGGAAATTGGGCTGCGAAGAGTTCGTCCTGGCGATGTACCTGTGCGAGAAGGCGACGCAGGGCGAGCCGGTGCCCGCCAGGCTGCCTCCGGAACTGATCCCGCCTTCCTTCAGGAGGGAATCGGTTTCGTCCACGAGCAGCGCTAAGTCGTACGAGGAGCGGCGGCGGGAGAACATGGCGCGCGGACAGGCCGAGCTCGAGCGCCGACGGACGCAGCTGGCCGACGCACAGATGAAGGAGAAGGCAGAGAGGGAGAGGAAAGAGCGAGAGGAAGCCGAGAAGAGAGAAAAACTCCGTCTGGAGGCCCAGCAGAGGGAGCAGGAGGAGTTACTCCGTAAACAGAAGGAGGAACAGGAAAAACGCGAAGCTGCACGCAAAGAGATGGAGAGGCAGTGCCAGCTGGAGTGGGAGAAGAAACGGACCAGGGAACTGGAAGCGCTGAGGAGCGAGGAGCAGAGCAAGGTGTTGAGTCTGAAGGCGAAGTGCCAGTCGCTGAGCGCGCAACTCGGCGCCGAGAGCGTCCGCTGCAGCACCCTGGCCGCCAGCATCCGGGACACCAGGACCGCCGTCGCCGCCGACAAGCGGACCATAGACGGCATGAGGTCCGACCGGGACTCCAGCATGGCGGAGATGCAGCAGCTGAAGGCGCGAGTCAAGGAGCTCAACGCGAAGCAGATCGCTTTGAACAAAGAGAAGGCGGAGTTGGACGCCAAGGCTAAAGCCGCAGAGGGCGCTGGTGAGGATGGGAAACTCAGCATGATGGAGGTCACGCTCAAGCAACTCCGGGAGAAGGTGGAGGCCGCCAAAGCTATCGTTGAATCGAAGACCGCGGACCTGCAGCACAACGAGGCCCAGCTGGCGGAGCTGAACGCGACGGTAGCGACGCTCAGCGACAAGTGCGAGAAGGTGTGGAAGCTGTACGAGGAGAAACGGAACGAGTACATCGAGAGGAGGAACACGGCGCCCGCGGAGGGGACCTGGGGCAGCAGCGACGCGGACTGGGGCGCCGCGGACGCCGCGTGGAGCTCCCCCCCGGCCGAGGACGCGTGGGGCGACGCGCCCACCACCACCGCCACGGAGACGGTGCAGACCGCAGCCCCCGGGGGCGAGGGCCCGCAGCCGCCGCGGTGGCGCTGCGTGTACCCGTTCGTGGGGCGCAGCGCCGACGAGCTGAGCGTGCAGCCCGGGGACCTCATCGTGCCGCGCGCGCCCCCCGCCGCGCCAGAGCCCGGCTGGGCCTGGGGCAGCGCCAGGGGTCAGAGCGGCTGGTTCCCGGAATCGTACGTGGAGGACCTCAACGCTCCCACCGCGTTCGTCACCGAGGTCATCGAGACCCTCGAGCCAAAGACGCAGCTTGAAGGGATAGCGGAGGTACCCGAACAGGAGGCCACCAGCGACCTCGGGGGCGCGCTGCCGGCAGTAGACGACGGCGAGTTCTACATAGCGTCGTACCCGTACAGCTCCTCGGAGCCCGGCGACCTGGTGTTCGAGGCCGGCGAGAGGATCGAGGTGGTGCGGCGCGACGGCGACTGGTGGACCGGCAGGATCGGGGCCAGGACCGGCATATTCCCCTCGAACTACGTGTCCCGGGAGGCAGCGCCCGCGGCCACCTCGGAGCCCCAGGACTCCGCCCCGGCCGAGGCGTCCCCCGCACCCCCCGCCGCGCCCGAGCAGGAGGACACGTCGCCCCCCAACACAACTCCGCCGATACCTGCCTCTCAGGACCAGAAGTCCTCGACGCCGATATCGTCAGAGGTGGCCATGATCACGGACCCCGCGCGGCCCCCCTCCGCCGCGGGGGCGCGCCGCGACTCCGGGCGCGACTCCGTCACCGGCCGCCGCAAGCACGAGATAGTGCAGGCGCTCGCCAGCTACACCGCCACCAGCCCGGAGCAGCTGAGTCTGATGAAGGGACAGCTGCTGGTGGTGCGCAAGAAGGCCGACAGCGGCTGGTGGGAGGGCGAGCTGCAGGCCAAGGGCAGGAACCGGCAGGTCGGCTGGTTCCCCGCTTCCTACGTCAAGGTGCTGCAGTCGTCGGGGCGGACCTCGGGCCGCACCACTCCCGTGCTCTCCTCGAAGATGGACGCTCTACCCACGGAGACGGTCATCGACAAGGTGGTGGCGCTGTATCCGTACACGGCTCAAAACGCGGACGAGCTCAGCTTCGAGAAGGACGACATCATAGCCGTCACCGACCGCAGCCAGGACCCGGCGTGGTGGCAAGGCGAACTTCGTGGCATGGTCGGCCTCTTCCCCAGCAATTACGTTACGAAATTAGTTAATTAA

Protein

MMADPWTIQAHEHAKFSEHFRNLGPVNGNLTGEQAKRFMLQSQLPPPVLGQIWSLADTNADGKLDLKEFSIACKIINLKLRGLEVPKMLPPSLIASLSPTGGQSQQVVPPAKPAIPPLPNIPPQPLISGLSPTQPSNQSLLGDFGSGQPLIQPLVQPVKPPVSTVPDLISGVKPLSQSLLDSPPMAPTVQPLIGTVQPLIGPDPLMGSVQPLIGSQPLAGPTPLVSSPQTLVNSSPLVSSQPIMSSQPLISASTISAQPLGTMQPLIGTAPPIMGATQALIQSPPLSGPQQPAPVTAASFGGSPPHPVVAASVPGQPVTSTPIAALNKEVISKPGSVVTSPEVPMGVMSPPPMEWGVPQPQKLKYTQLFNATDRAKTGSVSGTQARSIMLQSRLPQQSLAQIWALADLDADGKLGCEEFVLAMYLCEKATQGEPVPARLPPELIPPSFRRESVSSTSSAKSYEERRRENMARGQAELERRRTQLADAQMKEKAERERKEREEAEKREKLRLEAQQREQEELLRKQKEEQEKREAARKEMERQCQLEWEKKRTRELEALRSEEQSKVLSLKAKCQSLSAQLGAESVRCSTLAASIRDTRTAVAADKRTIDGMRSDRDSSMAEMQQLKARVKELNAKQIALNKEKAELDAKAKAAEGAGEDGKLSMMEVTLKQLREKVEAAKAIVESKTADLQHNEAQLAELNATVATLSDKCEKVWKLYEEKRNEYIERRNTAPAEGTWGSSDADWGAADAAWSSPPAEDAWGDAPTTTATETVQTAAPGGEGPQPPRWRCVYPFVGRSADELSVQPGDLIVPRAPPAAPEPGWAWGSARGQSGWFPESYVEDLNAPTAFVTEVIETLEPKTQLEGIAEVPEQEATSDLGGALPAVDDGEFYIASYPYSSSEPGDLVFEAGERIEVVRRDGDWWTGRIGARTGIFPSNYVSREAAPAATSEPQDSAPAEASPAPPAAPEQEDTSPPNTTPPIPASQDQKSSTPISSEVAMITDPARPPSAAGARRDSGRDSVTGRRKHEIVQALASYTATSPEQLSLMKGQLLVVRKKADSGWWEGELQAKGRNRQVGWFPASYVKVLQSSGRTSGRTTPVLSSKMDALPTETVIDKVVALYPYTAQNADELSFEKDDIIAVTDRSQDPAWWQGELRGMVGLFPSNYVTKLVN

Uniprot

A0A0N1PEJ2 A0A3S2NFR7 M9ND00 A0A0P8Y5N1 B3MU53 B4JQB8 + More
A0A1L8DMU6 A0A1L8DMI3 A0A182VSJ4 A0A1A9XUE8 A0A1B0C500 A0A1I8NMH7 A0A1I8NMH4 A0A1I8NMH6 A0A1A9ZR30 A0A1A9WZS5 A0A151WXV6 A0A1B6GX61

Pubmed

26354079 10731132 12537568 12537572 12537573 12537574 + More
16110336 17569856 17569867 17994087

EMBL

KQ458725 KPJ05363.1 RSAL01000131 RVE46411.1 AE014134 AFH03792.1 + More
CH902624 KPU74438.1 EDV33382.1 CH916372 EDV99098.1 GFDF01006414 JAV07670.1 GFDF01006415 JAV07669.1 JXJN01025742 KQ982668 KYQ52515.1 GECZ01002774 JAS66995.1

Proteomes

UP000053268 UP000283053 UP000000803 UP000007801 UP000001070 UP000075920 + More
UP000092443 UP000092460 UP000095300 UP000092445 UP000091820 UP000075809

PRIDE

M9ND00

Pfam

PF12763   EF-hand_4        + More
PF14604   SH3_9
PF00018   SH3_1
PF00621   RhoGEF
PF00168   C2
PF16652   PH_13

Interpro

IPR001452   SH3_domain        + More
IPR000261   EH_dom
IPR018247   EF_Hand_1_Ca_BS
IPR011992   EF-hand-dom_pair
IPR002048   EF_hand_dom
IPR036028   SH3-like_dom_sf
IPR035979   RBD_domain_sf
IPR012677   Nucleotide-bd_a/b_plait_sf
IPR035899   DBL_dom_sf
IPR000219   DH-domain
IPR001849   PH_domain
IPR035892   C2_domain_sf
IPR000008   C2_dom
IPR011993   PH-like_dom_sf

SUPFAM

SSF50044   SSF50044        + More
SSF47473   SSF47473
SSF54928   SSF54928
SSF48065   SSF48065

Gene 3D

3.30.70.330 1.20.900.10 2.30.29.30 2.60.40.150

CDD

cd00052 EH
cd00160 RhoGEF

ProteinModelPortal

A0A0N1PEJ2 A0A3S2NFR7 M9ND00 A0A0P8Y5N1 B3MU53 B4JQB8 + More
A0A1L8DMU6 A0A1L8DMI3 A0A182VSJ4 A0A1A9XUE8 A0A1B0C500 A0A1I8NMH7 A0A1I8NMH4 A0A1I8NMH6 A0A1A9ZR30 A0A1A9WZS5 A0A151WXV6 A0A1B6GX61

PDB

2KGR E-value=8.61657e-24, Score=278

KEGG

101737181 K20045 intersectin | (RefSeq) intersectin-1

GO

GO:0005509 GO:0048488 GO:0150008 GO:0005737 GO:0045746 GO:0045179 GO:0008104 GO:0150007 GO:0002052 GO:0003676 GO:0008021 GO:0045860 GO:0042734 GO:0005089 GO:0035023 GO:0005515 GO:0043065 GO:0005975 GO:0030246 GO:0004559 GO:0006013 GO:0015923 GO:0005634 GO:0006260

Length:

1172

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00121

Exp number, first 60 AAs:

0.00017

Total prob of N-in:

0.00003

outside

1 - 1172

Pi

300.86468

Theta

163.341222

Tajima's D

2.272895

CLR

0.43766

CSRT

0.918454077296135

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics