Gene

KWMTBOMO06111  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001733

Annotation

PREDICTED:_protein_LSM12_homolog_[Papilio_polytes]

Location

Bomo_Chr11(+):594575-597534      View in EpiBrowser

Full name

LSM12 homolog A      

Alternative Name

Protein Lsm12

Location in the cell

Cytoplasmic   Reliability : 1.04 Mitochondrial   Reliability : 1.133 Nuclear   Reliability : 1.162

CDS

ATGGCGATAGCTAGAGTGATTGACGACGTGTCCTGGGCCGGACAGAGCATCCGAGTATACAATAACAAAATACACCAAGTAATGATCACACCTCCATATAAGGTCGATGACGTCATAGGCGAAAAGGATTCCCAGTCGTATAATTATATTAAGAAATTCGTAGAAAGACACTGGCGCGATCGTCCCACGCCTGCGCCCCAACAATAA

Protein

MAIARVIDDVSWAGQSIRVYNNKIHQVMITPPYKVDDVIGEKDSQSYNYIKKFVERHWRDRPTPAPQQ

Description

Component of the Atx2-tyf activator complex which functions in the circadian pacemaker neurons to activate the TYF-dependent translation of per and maintain 24 hour periodicity in circadian behaviors. Within the Atx2-tyf complex, likely to function as a molecular adapter which stabilizes the interaction between Atx2 and the translational regulator tyf.

Subunit

Component of the Atx2-tyf activator complex, composed of Atx2, tyf, pAbp, Lsm12. Interacts with tyf, Atx2 and pAbp.

Similarity

Belongs to the LSM12 family.

Keywords

Complete proteome   Reference proteome  

Feature

chain  LSM12 homolog A

Uniprot

H9IWV0   A0A2W1BEJ6   A0A2A4JRI6   A0A2H1VXJ0   S4P382   I4DPB8   + More
A0A0N1I7N9   A0A212EXA6   A0A1E1W162   A0A3S2L5V3   U5EQH9   T1E2F8   B0XGZ7   A0A1Q3F9V4   E2AUX3   A0A1B6GS47   A0A0C9PID9   A0A151IFK6   Q170S3   A0A182IVF6   A0A1B0CTY5   A0A0J7L0N4   A0A1B0FY79   A0A195FJL3   A0A151JBJ7   F4WAY7   A0A195BEB0   A0A151XF83   A0A158NRB9   A0A1L8DC82   A0A1L8DCM6   A0A1B6IZ86   E0VNM5   A0A026WFH8   A0A3L8DJV0   A0A1B6KTE3   A0A182QI28   A0A2J7RFB9   A0A182NMW7   E2BLG3   A0A2R7WLN7   A0A1Y1MSF7   D2A635   A0A084VCU0   A0A0T6B4Q7   B3MXT3   V5GUY7   A0A1W7RA99   A0A1D2NMV9   A0A069DRB3   B4PY92   A0A2R5L9V5   B3NXM4   A0A023F8V6   A0A0V0GB73   A0A1W4VWT8   B4R3L1   B4ILA9   Q9VYR0   A0A224XIL0   A0A2A3EBU9   V9IGW0   A0A0L7RCJ7   A0A088AR49   A0A310SH57   A0A1S3CX41   A0A182SNV6   A0A182XWH3   A0A0P4VXZ5   A0A232F9B9   K7IRS4   W5J4V3   A0A182LX51   A0A0P5TWN1   A0A182RFT6   A0A182VYF0   A0A182VEC1   A0A182U4U7   A0A182LQR2   A0A182WZJ8   Q7QK61   A0A182HZP7   A0A182JVG2   A0A0P6AIH0   A0A0A9Z6Z7   A0A0K8T7K6   A0A0P6GET2   A0A226DKV9   A0A182PEA4   A0A0N8B9Y6   C1C052   A0A0P5V7G6   A0A023GIB2   G3MMM4   A0A1E1XU14   A0A023FJ44   A0A1E1WZ46   B4JNB8   A0A023FU34  

Pubmed

19121390    28756777    23622113    22651552    26354079    22118469    + More
24330624    20798317    17510324    21719571    21347285    20566863    24508170    30249741    28004739    18362917    19820115    24438588    17994087    27289101    26334808    17550304    25474469    10731132    12537572    12537569    28388438    25244985    27129103    28648823    20075255    20920257    23761445    20966253    12364791    14747013    17210077    25401762    26823975    30926861    22216098    29209593    28503490   

EMBL

BABH01020981    KZ150158    PZC72751.1    NWSH01000714    PCG74645.1    ODYU01005049    + More
SOQ45550.1    GAIX01011710    JAA80850.1    AK403517    KQ458725    BAM19758.1    KPJ05362.1    KQ460546    KPJ14050.1    AGBW02011796    OWR46115.1    GDQN01010382    JAT80672.1    RSAL01000131    RVE46410.1    GANO01003258    JAB56613.1    GALA01000759    JAA94093.1    DS233082    EDS27965.1    GFDL01010695    JAV24350.1    GL442898    EFN62781.1    GECZ01004527    JAS65242.1    GBYB01000693    JAG70460.1    KQ977771    KYM99978.1    CH477469    EAT40444.1    EAT40445.1    AJWK01028171    AJWK01028172    LBMM01001417    KMQ96357.1    AJVK01000789    AJVK01000790    AJVK01000791    AJVK01000792    KQ981522    KYN40556.1    KQ979122    KYN22531.1    GL888056    EGI68607.1    KQ976504    KYM82921.1    KQ982205    KYQ58995.1    ADTU01023849    ADTU01023850    GFDF01010013    JAV04071.1    GFDF01010014    JAV04070.1    GECU01015480    JAS92226.1    DS235340    EEB14981.1    KK107238    EZA54683.1    QOIP01000007    RLU20677.1    GEBQ01025306    JAT14671.1    AXCN02001550    NEVH01004413    PNF39533.1    GL449017    EFN83515.1    KK854868    PTY19345.1    GEZM01022992    JAV88623.1    KQ971346    EFA04985.1    ATLV01010866    KE524621    KFB35784.1    LJIG01009825    KRT82306.1    CH902630    EDV38548.1    GALX01000522    JAB67944.1    GFAH01000332    JAV48057.1    LJIJ01000002    ODN06592.1    GBGD01002648    JAC86241.1    CM000162    EDX00965.1    GGLE01002109    MBY06235.1    CH954180    EDV47325.1    GBBI01000857    JAC17855.1    GECL01000762    JAP05362.1    CM000366    EDX17713.1    CH480868    EDW53755.1    AE014298    AY069351    GFTR01004100    JAW12326.1    KZ288289    PBC29253.1    JR043102    AEY59726.1    KQ414615    KOC68525.1    KQ763581    OAD54969.1    GDKW01002136    JAI54459.1    NNAY01000701    OXU26907.1    ADMH02002134    ETN58423.1    AXCM01003899    GDIP01123061    JAL80653.1    AAAB01008799    EAA03679.4    EGK96214.1    APCN01001988    GDIP01030514    JAM73201.1    GBHO01002568    GBHO01002567    GDHC01017555    JAG41036.1    JAG41037.1    JAQ01074.1    GBRD01004318    JAG61503.1    GDIQ01046536    JAN48201.1    LNIX01000017    MH602547    OXA45760.1    QBH72792.1    GDIQ01198371    JAK53354.1    BT080231    ACO14655.1    GDIP01104564    JAL99150.1    GBBM01002650    JAC32768.1    JO843125    AEO34742.1    GFAA01000644    JAU02791.1    GBBK01003814    JAC20668.1    GFAC01006921    JAT92267.1    CH916371    EDV92211.1    GBBL01001989    JAC25331.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000007151    UP000283053    + More
UP000002320    UP000000311    UP000078542    UP000008820    UP000075880    UP000092461    UP000036403    UP000092462    UP000078541    UP000078492    UP000007755    UP000078540    UP000075809    UP000005205    UP000009046    UP000053097    UP000279307    UP000075886    UP000235965    UP000075884    UP000008237    UP000007266    UP000030765    UP000007801    UP000094527    UP000002282    UP000008711    UP000192221    UP000000304    UP000001292    UP000000803    UP000242457    UP000053825    UP000005203    UP000079169    UP000075901    UP000076408    UP000215335    UP000002358    UP000000673    UP000075883    UP000075900    UP000075920    UP000075903    UP000075902    UP000075882    UP000076407    UP000007062    UP000075840    UP000075881    UP000198287    UP000075885    UP000001070   

PRIDE

H9IWV0    Q9VYR0   

Pfam

PF09793   AD

Interpro

IPR039683   Lsm12-like        + More
IPR019181   Anticodon-binding_dom       

ProteinModelPortal

H9IWV0   A0A2W1BEJ6   A0A2A4JRI6   A0A2H1VXJ0   S4P382   I4DPB8   + More
A0A0N1I7N9   A0A212EXA6   A0A1E1W162   A0A3S2L5V3   U5EQH9   T1E2F8   B0XGZ7   A0A1Q3F9V4   E2AUX3   A0A1B6GS47   A0A0C9PID9   A0A151IFK6   Q170S3   A0A182IVF6   A0A1B0CTY5   A0A0J7L0N4   A0A1B0FY79   A0A195FJL3   A0A151JBJ7   F4WAY7   A0A195BEB0   A0A151XF83   A0A158NRB9   A0A1L8DC82   A0A1L8DCM6   A0A1B6IZ86   E0VNM5   A0A026WFH8   A0A3L8DJV0   A0A1B6KTE3   A0A182QI28   A0A2J7RFB9   A0A182NMW7   E2BLG3   A0A2R7WLN7   A0A1Y1MSF7   D2A635   A0A084VCU0   A0A0T6B4Q7   B3MXT3   V5GUY7   A0A1W7RA99   A0A1D2NMV9   A0A069DRB3   B4PY92   A0A2R5L9V5   B3NXM4   A0A023F8V6   A0A0V0GB73   A0A1W4VWT8   B4R3L1   B4ILA9   Q9VYR0   A0A224XIL0   A0A2A3EBU9   V9IGW0   A0A0L7RCJ7   A0A088AR49   A0A310SH57   A0A1S3CX41   A0A182SNV6   A0A182XWH3   A0A0P4VXZ5   A0A232F9B9   K7IRS4   W5J4V3   A0A182LX51   A0A0P5TWN1   A0A182RFT6   A0A182VYF0   A0A182VEC1   A0A182U4U7   A0A182LQR2   A0A182WZJ8   Q7QK61   A0A182HZP7   A0A182JVG2   A0A0P6AIH0   A0A0A9Z6Z7   A0A0K8T7K6   A0A0P6GET2   A0A226DKV9   A0A182PEA4   A0A0N8B9Y6   C1C052   A0A0P5V7G6   A0A023GIB2   G3MMM4   A0A1E1XU14   A0A023FJ44   A0A1E1WZ46   B4JNB8   A0A023FU34  

KEGG

101742083    no KO assigned | (RefSeq) protein LSM12 homolog A

GO

GO:0005634   GO:0016070  

PANTHER

PTHR13542  

Length:

68

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.44547

outside

1  -  68

 

 

Pi

156.922388

Theta

182.67833

Tajima's D

2.876666

CLR

0.355662

CSRT

0.970551472426379

Interpretation

Uncertain