Silkworm Genome Informatics Database

Gene

KWMTBOMO06109

Pre Gene Modal

BGIBMGA001693

Annotation

PREDICTED:_S-phase_kinase-associated_protein_2-like_[Papilio_polytes]

Location

Bomo_Chr11(-):548327-560384 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.367

CDS

ATGAACATTAGTGGTCTGGAAGATGAAGTTAATTCACCCGTTAAACCAGACGATGCAGAAAGTCCTAGCAAGAAAAAACTTAGAATAAGTAATTCGACGCGGAAAAGTTGGAGTTTGATGGACAAACGAACGAATTACGAGGTATTACAAGAAATGGGGGTTAGTTTGCTTGAGCCTGATGATAATGAACAATCCTGTGAACTGAGTTCGAGCAGTGGAGGGCACCACCACAAAGGCACAAAACGAAAACGGGACATAGAAAACGTGAATCCAAATACGAATTCATGTTCTCCGATCACAAAACGAAGCCCGGGACCTTCCAAGGCGAAGAGCCCTCGCGTTCACACCGGCAAACCGCTGCAGCAGACGGACTGTGAGACGACTCTAGTGGAAGGGATCGCGTTTGACGAGGAGACCCCGCTGGCGCAGTGCATCAGCGCCTACGTGCCCAGGGAGCAGCGGGCGCATCCCAGCCCAGTCAGGACACCGTCGTCCCCCGCGCGGAGGCCGGCGCAGCCCCGGGGCGCCGCCCCCCGCCGCTGCGGCGCGGACTCCTTCTCGGTGCTCTCGGACGAGATGATCCTGAGCGTGTTCCGCTGGCTGCCCAAGCGCACGCTCGCGCACTGCATGCTCGTCTGTAAGAGGTGGTACCGAATAGCTTCGGACGAGACGCTGTGGCAGCGGCTGGACCTCGGCAACAAGGCGATAGCTAGAGACGCCCTGGGGAAGATCCTGGACAGGAAGCCGGTCATAGTCAGACTGGCCAGCTCGGAGATCGGTTCGTGGTGCTCGGGGTCAACAGCGCCGTCCCGCGTCCAATATTTAGACCTGAGCATGTGCTCGATACAGCTGGAGACTTTGGACCGGCTGCTGGAGAACTGTCCCGGCTTGAAGAAGTTGAGCTTGGAGAGTGTGAACGTTGCTGACACTACCTGCGCTATCCTGGGTAGATGTACAAATTTGGAGACATTAAACATGACAATGGCACAAGGGATTACCGCAGAAGGGTCGAGAGCGTTACTTGAGGGATGTGTGAACCTACAGTCCTTGAATATATCGTGGTGCAATCTGAGCGAGGCGGCTCTCCAGGTGCTGGTGGACATGTTGCCGCGCCGGCTGCAGCGGCTCAACCTCGGCGGAGCCAGGATTATGACTGATGAGTTGACGGAGCGGCTGTGCGCGCGCTGCCCGCGCCTGGCCGAGCTGGACCTGTCGGACTGCTCGCGGCTGACCCCCCGCGCGCTGCAGAGTCTGGTGACCCTGGGCAGGCTCGAGCACGCGGCCCTCAGTCGCTGCTACATGCTCTCCGGACATACGCTTTCTAAATTGTCAGCGATGCCTTCTCTGCGATACCTAGAAGTTTGGGGGATGCTGCAAGCTCCAAATCTTAGTTTATTAAAAGCCAATCTACCATCGATCCAGATCAACCACTTCATGTTCAGCGCCATAGCGAGGCCCACGGTCGGCACGCGCCGCTCTTCAGTGTGGGGATTAAGAACCAGAGACTGA

Protein

MNISGLEDEVNSPVKPDDAESPSKKKLRISNSTRKSWSLMDKRTNYEVLQEMGVSLLEPDDNEQSCELSSSSGGHHHKGTKRKRDIENVNPNTNSCSPITKRSPGPSKAKSPRVHTGKPLQQTDCETTLVEGIAFDEETPLAQCISAYVPREQRAHPSPVRTPSSPARRPAQPRGAAPRRCGADSFSVLSDEMILSVFRWLPKRTLAHCMLVCKRWYRIASDETLWQRLDLGNKAIARDALGKILDRKPVIVRLASSEIGSWCSGSTAPSRVQYLDLSMCSIQLETLDRLLENCPGLKKLSLESVNVADTTCAILGRCTNLETLNMTMAQGITAEGSRALLEGCVNLQSLNISWCNLSEAALQVLVDMLPRRLQRLNLGGARIMTDELTERLCARCPRLAELDLSDCSRLTPRALQSLVTLGRLEHAALSRCYMLSGHTLSKLSAMPSLRYLEVWGMLQAPNLSLLKANLPSIQINHFMFSAIARPTVGTRRSSVWGLRTRD

Uniprot

H9IWR1 S4PDV1 A0A3S2LXQ2 A0A0N0PCV0 A0A2H1VC74 A0A0N0PA98 + More
A0A212EWT0 A0A2J7PMV9 A0A195E2D2 A0A195AVA8 A0A151XFA5 E2BGW6

Pubmed

19121390 23622113 26354079 22118469 20798317

EMBL

BABH01020978 GAIX01003491 JAA89069.1 RSAL01000131 RVE46408.1 KQ460546 + More
KPJ14052.1 ODYU01001776 SOQ38448.1 KQ458725 KPJ05360.1 AGBW02011898 OWR45949.1 NEVH01023960 PNF17674.1 KQ979763 KYN19236.1 KQ976737 KYM75909.1 KQ982194 KYQ59063.1 GL448228 EFN85098.1

Proteomes

UP000005204 UP000283053 UP000053240 UP000053268 UP000007151 UP000235965 + More
UP000078492 UP000078540 UP000075809 UP000008237

PRIDE

H9IWR1

Pfam

PF00560   LRR_1        + More
PF12937   F-box-like
PF13516   LRR_6

Interpro

IPR001611   Leu-rich_rpt        + More
IPR001810   F-box_dom
IPR032675   LRR_dom_sf
IPR006553   Leu-rich_rpt_Cys-con_subtyp
IPR036047   F-box-like_dom_sf

SUPFAM

SSF81383 SSF81383

Gene 3D

3.80.10.10

ProteinModelPortal

H9IWR1 S4PDV1 A0A3S2LXQ2 A0A0N0PCV0 A0A2H1VC74 A0A0N0PA98 + More
A0A212EWT0 A0A2J7PMV9 A0A195E2D2 A0A195AVA8 A0A151XFA5 E2BGW6

PDB

2AST E-value=9.77918e-52, Score=515

KEGG

101741790 K03875 F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2) | (RefSeq) S-ph

PATHWAY

04068    FoxO signaling pathway - Bombyx mori (domestic silkworm)
04120    Ubiquitin mediated proteolysis - Bombyx mori (domestic silkworm)
04150    mTOR signaling pathway - Bombyx mori (domestic silkworm)

GO

GO:0016301 GO:0005515 GO:0008270 GO:0003824 GO:0005975 GO:0030246 GO:0004559 GO:0006013 GO:0015923 GO:0005634 GO:0006260

Length:

502

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01445

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00103

outside

1 - 502

Pi

208.431684

Theta

142.739369

Tajima's D

0.734001

CLR

0.208248

CSRT

0.586970651467427

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics