Gene

KWMTBOMO06099  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001699

Annotation

PREDICTED:_ran_GTPase-activating_protein_1_[Papilio_machaon]

Location

Bomo_Chr11(-):332767-338534      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.014

CDS

ATGGCCACTTTCGATTTAAATTCATTAAACACAGTGCTTGATGAGCCCGCACAGCCGGAAACCGGTGTCGATTTTTCTGGAAAATCTCTAAAATTGGATACCGCGAAAGATGCACAACAAATTGTAGACGCGATCAATAAATGCCCGAACCTCCAATATCTTGCGTTGACCGGCAATACACTGGGTGTGACGGCCGCCCATGCGATCTCCAAGGCCTTAGAATCACACCCTGAACTCAAGATAGCCAGATTCTCGGACATGTTTACTGGGAGAATGAAAACTGAGATCCCGCCAGCTTTGAGTGCTTTAGGTGATGGCATGATAGCAGCTGGAGCTCGTTTAGCTGTGCTGGACCTGAGTGATAATGCATTCGGCCCAATAGGAGTTGAAGGTCTTGCTAAGCTGCTGCAAAGTGATGTCTGCTCTGACCTAGAGGAGCTTCGTCTGAACAACAACGGCCTTGGCATAACCGGTGGTAAGTTGTTGGCACGCGCACTCTCCAGTAGGAAGCGGAGACTACGGGTCTTCATAGCCGGGAGGAATCGTTTGGAGAATGACGGTGCCACCGCGCTGGCCAAAGTTTTTCAGGAAATGGGTTCCTTAGAAGAGATAGCTATGCCACAGAACGGTATATACCATGTCGGTATAACGGCTCTATCGGAAGCATTCAAACACAACCCGGCACTGAACCATCTTAATTTAAATGACAATACTATCGGGGCTAAAGGTGCTGAAGCCATTGCCGGTGCCCTGCCAAGATTAAAGAATCTTAAAAGTATTAACTTTGGTGATTGCCTCCTGAAGAGCAGAGGAGCAAGAGCTTTGGCTAAAGCTTTCAAGGGAAACTCATTGCTATTAGAGTCTCTGGACCTCAGTCACAACGAGATCGGACGAGAGGCGTGCATGGAGCTGGTAGATGCCATCACTGAGCAGCCCGACAGCCAGGAAAGACTCAGCCGGATAGTTTTGGCAGGGAACAGCTTGGGCAATGCGGCCAACAAGAAGAGCCTGAAAGATAAGCTCGGTGCTTCAGCAGAGCTCAGCGATGGGGAGGGCAGCGATGATGAATTATAA

Protein

MATFDLNSLNTVLDEPAQPETGVDFSGKSLKLDTAKDAQQIVDAINKCPNLQYLALTGNTLGVTAAHAISKALESHPELKIARFSDMFTGRMKTEIPPALSALGDGMIAAGARLAVLDLSDNAFGPIGVEGLAKLLQSDVCSDLEELRLNNNGLGITGGKLLARALSSRKRRLRVFIAGRNRLENDGATALAKVFQEMGSLEEIAMPQNGIYHVGITALSEAFKHNPALNHLNLNDNTIGAKGAEAIAGALPRLKNLKSINFGDCLLKSRGARALAKAFKGNSLLLESLDLSHNEIGREACMELVDAITEQPDSQERLSRIVLAGNSLGNAANKKSLKDKLGASAELSDGEGSDDEL

Uniprot

H9IWR7   A0A0N1IG59   S4PN05   A0A2A4K2T7   A0A2H1VYE5   A0A2W1BBH3   + More
A0A0T6BDU8   D6WGI9   A0A1S4JH59   U4UAY2   N6T0G5   A0A1L4A1S9   A0A182JB09   A0A1Q3FWC7   A0A2M4BJN1   A0A2M4BJI4   A0A2P8YZK8   A0A2M4BIX7   A0A084W4U9   A0A2M4AFZ6   A0A2J7PHF8   A0A182F4A7   A0A067QH98   W5JC64   A0A2M4AG32   A0A182GKJ3   A0A2J7PHG4   A0A2J7PHG2   A0A182GTR2   Q170N9   A0A1S4FI06   A0A1B6HAY1   Q30CK9   A0A1Y1NB65   A0A1Y1N9Y0   A0A1B6FZS9   U5EZK0   A0A0C9QDM6   A0A182SL43   A0A1B6FQA6   A0A182MYY9   A0A182MJM7   A0A1B6KVR9   A0A0L8HCS3   Q08BV5   A0A232FKE5   K7J686   A0A182Y3H2   A0A182TVH7   A0A182JSD5   A0A0L8HDE7   A0A182V719   A7UUK5   A0A182ICH5   A0A2A3EM61   A0A0L8HEA2   A0A182R303   A0A088A9V7   A0A3N0Y567   A0A182QN01   R7UC73   A0A182XL48   A0A0M8ZRE7   A0A2K5QEM6   A0A3L8DJJ5   A0A026WGT5   A0A336L6T2   E2B521   A0A1S3DA71   A0A1A8CML4   R7VVH2   A0A2I0MJH8   A0A3B3RGM1   A0A2J8TWS3   Q5R4P2   A0A093D0E0   A0A336LXL2   A0A3B3RHY1   A0A0L0BRY8   A0A1A8Q9T2   A0A3B3CBH8   A0A1A8FKY2   A0A3S2PT53   A0A3B3CA15   A0A2K5QEL9   A0A3B3XKL4   A0A3B3XKM3   A0A3B3UM75   A0A3B3VT17   A8KC67   A0A3B3XKP4   A0A099ZQC3   Q7ZY43   A0A087Y8G1   F1MFD5   A0A3P8V881   A0A3B3BHX2   A0A096LUB9   A0A2U4C4I9   A0A3B4CCZ1  

Pubmed

19121390    26354079    23622113    28756777    18362917    19820115    + More
23537049    29403074    24438588    24845553    20920257    23761445    26483478    17510324    28004739    23594743    28648823    20075255    25244985    12364791    14747013    17210077    23254933    30249741    24508170    20798317    23371554    29240929    26108605    29451363    27762356    19393038    24487278   

EMBL

BABH01020967    KQ460546    KPJ14058.1    GAIX01003265    JAA89295.1    NWSH01000192    + More
PCG78565.1    ODYU01005214    SOQ45855.1    KZ150166    PZC72642.1    LJIG01001534    KRT85406.1    KQ971321    EFA00171.1    KB632169    ERL89468.1    APGK01049569    KB741156    ENN73549.1    KU133478    API61856.1    GFDL01003322    JAV31723.1    GGFJ01004073    MBW53214.1    GGFJ01004074    MBW53215.1    PYGN01000266    PSN49681.1    GGFJ01003627    MBW52768.1    ATLV01020383    KE525299    KFB45243.1    GGFK01006382    MBW39703.1    NEVH01025136    PNF15771.1    KK853424    KDR07701.1    ADMH02001927    ETN60475.1    GGFK01006418    MBW39739.1    JXUM01070055    KQ562586    KXJ75540.1    PNF15769.1    PNF15770.1    JXUM01018231    KQ560506    KXJ82076.1    CH477471    EAT40412.1    GECU01035957    JAS71749.1    DQ138953    DQ177444    ABB03731.1    GEZM01011735    JAV93456.1    GEZM01011736    JAV93455.1    GECZ01014089    JAS55680.1    GANO01000654    JAB59217.1    GBYB01001414    JAG71181.1    GECZ01017382    JAS52387.1    AXCM01001957    GEBQ01024462    JAT15515.1    KQ418495    KOF87101.1    CR774195    CU633617    CU655966    BC124540    AAI24541.1    NNAY01000075    OXU31226.1    KOF87099.1    AAAB01008964    EDO63574.1    APCN01000799    KZ288212    PBC32845.1    KOF87100.1    RJVU01051812    ROL41297.1    AXCN02000788    AMQN01009266    KB305088    ELU01388.1    KQ435891    KOX69417.1    QOIP01000007    RLU20506.1    KK107213    EZA55277.1    UFQS01002138    UFQT01002138    SSX13300.1    SSX32736.1    GL445685    EFN89229.1    HADZ01016054    SBP79995.1    KB376364    EMC89978.1    AKCR02000009    PKK29827.1    ABGA01185329    ABGA01185330    ABGA01185331    ABGA01185332    NDHI03003480    PNJ37473.1    PNJ37474.1    PNJ37476.1    CR861203    CAH93274.1    KL470199    KFV18559.1    UFQT01000192    SSX21403.1    JRES01001455    KNC22763.1    HAEG01011513    SBR89954.1    HAEB01012894    HAEC01007975    SBQ59421.1    CM012444    RVE69190.1    BC154378    AAI54379.1    KL896982    KGL84041.1    BC043982    CM004472    AAH43982.1    OCT85510.1    AYCK01015915   

Proteomes

UP000005204    UP000053240    UP000218220    UP000007266    UP000030742    UP000019118    + More
UP000075880    UP000245037    UP000030765    UP000235965    UP000069272    UP000027135    UP000000673    UP000069940    UP000249989    UP000008820    UP000075901    UP000075884    UP000075883    UP000053454    UP000000437    UP000215335    UP000002358    UP000076408    UP000075902    UP000075881    UP000075903    UP000007062    UP000075840    UP000242457    UP000075900    UP000005203    UP000075886    UP000014760    UP000076407    UP000053105    UP000233040    UP000279307    UP000053097    UP000008237    UP000079169    UP000053872    UP000261540    UP000001595    UP000037069    UP000261560    UP000261480    UP000261500    UP000053641    UP000186698    UP000028760    UP000009136    UP000265120    UP000245320    UP000261440   

PRIDE

H9IWR7   

Pfam

PF13516   LRR_6        + More
PF07834   RanGAP1_C

Interpro

IPR036720   RanGAP1_C_sf        + More
IPR001611   Leu-rich_rpt       
IPR009109   Ran_GTPase_activating_1_C       
IPR032675   LRR_dom_sf       
IPR016024   ARM-type_fold       

SUPFAM

SSF69099   SSF69099        + More
SSF48371   SSF48371       

Gene 3D

1.25.40.200     3.80.10.10    

ProteinModelPortal

H9IWR7   A0A0N1IG59   S4PN05   A0A2A4K2T7   A0A2H1VYE5   A0A2W1BBH3   + More
A0A0T6BDU8   D6WGI9   A0A1S4JH59   U4UAY2   N6T0G5   A0A1L4A1S9   A0A182JB09   A0A1Q3FWC7   A0A2M4BJN1   A0A2M4BJI4   A0A2P8YZK8   A0A2M4BIX7   A0A084W4U9   A0A2M4AFZ6   A0A2J7PHF8   A0A182F4A7   A0A067QH98   W5JC64   A0A2M4AG32   A0A182GKJ3   A0A2J7PHG4   A0A2J7PHG2   A0A182GTR2   Q170N9   A0A1S4FI06   A0A1B6HAY1   Q30CK9   A0A1Y1NB65   A0A1Y1N9Y0   A0A1B6FZS9   U5EZK0   A0A0C9QDM6   A0A182SL43   A0A1B6FQA6   A0A182MYY9   A0A182MJM7   A0A1B6KVR9   A0A0L8HCS3   Q08BV5   A0A232FKE5   K7J686   A0A182Y3H2   A0A182TVH7   A0A182JSD5   A0A0L8HDE7   A0A182V719   A7UUK5   A0A182ICH5   A0A2A3EM61   A0A0L8HEA2   A0A182R303   A0A088A9V7   A0A3N0Y567   A0A182QN01   R7UC73   A0A182XL48   A0A0M8ZRE7   A0A2K5QEM6   A0A3L8DJJ5   A0A026WGT5   A0A336L6T2   E2B521   A0A1S3DA71   A0A1A8CML4   R7VVH2   A0A2I0MJH8   A0A3B3RGM1   A0A2J8TWS3   Q5R4P2   A0A093D0E0   A0A336LXL2   A0A3B3RHY1   A0A0L0BRY8   A0A1A8Q9T2   A0A3B3CBH8   A0A1A8FKY2   A0A3S2PT53   A0A3B3CA15   A0A2K5QEL9   A0A3B3XKL4   A0A3B3XKM3   A0A3B3UM75   A0A3B3VT17   A8KC67   A0A3B3XKP4   A0A099ZQC3   Q7ZY43   A0A087Y8G1   F1MFD5   A0A3P8V881   A0A3B3BHX2   A0A096LUB9   A0A2U4C4I9   A0A3B4CCZ1  

PDB

2CA6     E-value=4.47102e-26,     Score=292

KEGG

101740710    K14319 Ran GTPase-activating protein 1 | (RefSeq) ran GTPase-activating protein 1

PATHWAY

03013    RNA transport - Bombyx mori (domestic silkworm)

GO

GO:0005096   GO:0007165   GO:0016787   GO:0003723   GO:0048471   GO:0016235   GO:0000776   GO:0031965   GO:0046826   GO:0008536   GO:0005829   GO:0090630   GO:0005515   GO:0005634   GO:0008270   GO:0003924   GO:0016020   GO:0003677   GO:0000723   GO:0006260  

Length:

357

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0483100000000001

Exp number, first 60 AAs:

0.01148

Total prob of N-in:

0.00814

outside

1  -  357

 

 

Pi

262.750529

Theta

176.3836

Tajima's D

1.944578

CLR

0.062152

CSRT

0.873406329683516

Interpretation

Uncertain