Silkworm Genome Informatics Database

Gene

KWMTBOMO06098 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001699

Annotation

PREDICTED:_ran_GTPase-activating_protein_1_[Amyelois_transitella]

Location

Bomo_Chr11(-):328066-330934 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 1.322 Mitochondrial Reliability : 1.445

CDS

ATGTGCAGGGTGCTTGCGAGCGGGGGACGCAGCACGGACCGGGGGCGGGGGGTTGGGGGAAGAGAAGACATACAGTCCGACGTGGAGCGCTTCCTCAAGGATCCCTCCGTCAAGCACCTGAACTCCCTGGGTGACAGGGCTGCCGAGCTCATCGACGCTCATCTGCAGATGATCCGAGATCCGGATGCTATGACCGAGGCTTACGCTCAAGCGGTCCTGTGCGCCAGCGGGCTGTCGTCCCGGAGCGCGGCGGCCACCGCCCTCGCCATGCAACTCTACCCGCTGTTCATAGCCAGGGCTAAACGGCAAATGGCTCTGGCTAACTCGCTCTTACCCGGATTAGGACTTATCAAGTGGGAGAACAAGGACTATAAGATACGGTGGGACCTGCCCGGCTGCTACAGCATCCTGGCCAACGTTCTGGACGAGGCCTACTTCCCCGCCGGGCTCAGAGACACATTGAGATTTTTCATCACCAGTAAACTACCCACTCTGCCCACAGAAATAGAATTAGCTATAAAAAAACATCCGACTTTGTATACAAATAAATAA

Protein

MCRVLASGGRSTDRGRGVGGREDIQSDVERFLKDPSVKHLNSLGDRAAELIDAHLQMIRDPDAMTEAYAQAVLCASGLSSRSAAATALAMQLYPLFIARAKRQMALANSLLPGLGLIKWENKDYKIRWDLPGCYSILANVLDEAYFPAGLRDTLRFFITSKLPTLPTEIELAIKKHPTLYTNK

Uniprot

H9IWR7 S4PN05 A0A212F5P9 A0A0N1I5T2 A0A2A4K2T7 A0A2W1BLT2 + More
A0A0N1IG59 A0A2J7PHG2 A0A2J7PHG4 A0A067QH98 A0A232FKE5 E9G1R0 K7J686 A0A026WGT5 A0A3L8DJJ5 T1FRD5 A0A2T7PLL9 S4R4J8

Pubmed

19121390 23622113 22118469 26354079 28756777 24845553 + More
28648823 21292972 20075255 24508170 30249741 23254933

EMBL

BABH01020967 GAIX01003265 JAA89295.1 AGBW02010159 OWR49053.1 KQ458725 + More
KPJ05354.1 NWSH01000192 PCG78565.1 KZ150166 PZC72643.1 KQ460546 KPJ14058.1 NEVH01025136 PNF15770.1 PNF15769.1 KK853424 KDR07701.1 NNAY01000075 OXU31226.1 GL732529 EFX86541.1 KK107213 EZA55277.1 QOIP01000007 RLU20506.1 AMQM01002187 KB097700 ESN91763.1 PZQS01000003 PVD34310.1

Proteomes

UP000005204 UP000007151 UP000053268 UP000218220 UP000053240 UP000235965 + More
UP000027135 UP000215335 UP000000305 UP000002358 UP000053097 UP000279307 UP000015101 UP000245119 UP000245300

PRIDE

H9IWR7

Pfam

PF13516 LRR_6 + More
PF07834 RanGAP1_C

Interpro

IPR036720   RanGAP1_C_sf        + More
IPR001611   Leu-rich_rpt
IPR009109   Ran_GTPase_activating_1_C
IPR032675   LRR_dom_sf

SUPFAM

SSF69099 SSF69099

Gene 3D

1.25.40.200 3.80.10.10

ProteinModelPortal

H9IWR7 S4PN05 A0A212F5P9 A0A0N1I5T2 A0A2A4K2T7 A0A2W1BLT2 + More
A0A0N1IG59 A0A2J7PHG2 A0A2J7PHG4 A0A067QH98 A0A232FKE5 E9G1R0 K7J686 A0A026WGT5 A0A3L8DJJ5 T1FRD5 A0A2T7PLL9 S4R4J8

KEGG

101740710 K14319 Ran GTPase-activating protein 1 | (RefSeq) ran GTPase-activating protein 1

GO

GO:0005096 GO:0007165 GO:0005634 GO:0008270 GO:0003924 GO:0016020 GO:0003677 GO:0000723 GO:0006260

Length:

183

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.56345

Exp number, first 60 AAs:

0

Total prob of N-in:

0.15139

outside

1 - 183

Pi

196.233681

Theta

172.265843

Tajima's D

2.5724

CLR

0

CSRT

0.950152492375381

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics