Silkworm Genome Informatics Database

Gene

KWMTBOMO06093

Pre Gene Modal

BGIBMGA001723

Annotation

PREDICTED:_zinc_finger_protein_28-like_[Amyelois_transitella]

Location

Bomo_Chr11(+):247585-253459 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 4.221

CDS

ATGAGTGAGGACGATAGTATGTTTTATTGCTCATTTGTTAGTATTCACTATATAATCTGTGAATGCGGCGAGACATTTCCAACCGAAGATGATCTTAGATTACATTTGGAGAAAGAACATCCTCATAAAAAAGAGAAAAAGGAATTTAAATGTGGCGTTTGCGACAAAACCTTCTCTCTGGAAGAGGAATGTGTGAGGCACTACGAGGAGGCGCACATAGATCTGGACCTGGACCAGGAGGGTACGGAGACCGATGATGTATTCCTTGGCTACACGGATCCTAACGAAGTGGAGGTTCAGATACAAGGGAATGTTGTTCAGAAAGTTGTCTGTGAATTTTGCGGTGAAGTTTATGCTTCTTGTACGACCCACATTTGCTCCCTGAAGTTTGAACCCATCGAATCTGAAGCTAAAGTCAGAAAATACAAACAGCCGAAGAACATTGTGTGCGAAGTGTGCGGCAGGAAATATACTTCGAACGCAGCCCTGAGATACCACCAGAGAGTGCACACAGGAGAACGCCCATACAAATGCCACATGTGCGAGAAAACATTTACAATGCCATTGTTCTTAAAGGTTCATGTCAGAACTCATACCGGAGAGAAGCCCTATCAATGTCTCCAGTGTCCCAAAGCGTTTAGTAACAAAGCGGCTCTATTGAGACACGACCGTGTCCACACCGGAGTAAAGCCGTACAAGTGCCCGAAATGTGGCAAGGCCTTCAGCCAGTCCAACTCAATGAAGCTACACGTCAGCACCGTGCACCTGAAGATGCCGGCTCCGTACAAAAGCAAGTACAGGAAGATGATGGCGATGCAGCGAGTTAAGAATAATTCTTCAAGCGATTCGGATAAGAAAGGCAGAAGCAATGCTGAAATCGAACGTGCAGTTAAAAGTGTCAGTGATTTAGTGAATGTTAAAGAAGAAAGTGATGAGGAGAAGGTGGTGGTTAAGAGTGAGAGTGCGTACGATATGGGGGAAGCAGTCCTGTTTGATGAGATGGGTAACGAGGTCACCTATGAAGTTGTTTACGACTAA

Protein

MSEDDSMFYCSFVSIHYIICECGETFPTEDDLRLHLEKEHPHKKEKKEFKCGVCDKTFSLEEECVRHYEEAHIDLDLDQEGTETDDVFLGYTDPNEVEVQIQGNVVQKVVCEFCGEVYASCTTHICSLKFEPIESEAKVRKYKQPKNIVCEVCGRKYTSNAALRYHQRVHTGERPYKCHMCEKTFTMPLFLKVHVRTHTGEKPYQCLQCPKAFSNKAALLRHDRVHTGVKPYKCPKCGKAFSQSNSMKLHVSTVHLKMPAPYKSKYRKMMAMQRVKNNSSSDSDKKGRSNAEIERAVKSVSDLVNVKEESDEEKVVVKSESAYDMGEAVLFDEMGNEVTYEVVYD

Uniprot

H9IWU0 A0A2A4JTE3 A0A2W1BLU1 A0A0N1IND2 A0A2H1W0Z4

Pubmed

19121390 28756777 26354079

EMBL

BABH01020960 NWSH01000707 PCG74670.1 KZ150166 PZC72653.1 KQ458725 + More
KPJ05379.1 ODYU01005670 SOQ46765.1

Proteomes

UP000005204 UP000218220 UP000053268

PRIDE

H9IWU0

Pfam

PF00096 zf-C2H2

Interpro

IPR036236 Znf_C2H2_sf + More
IPR013087 Znf_C2H2_type

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

H9IWU0 A0A2A4JTE3 A0A2W1BLU1 A0A0N1IND2 A0A2H1W0Z4

PDB

2I13 E-value=5.28544e-26, Score=291

KEGG

101740573 no KO assigned | (RefSeq) zinc finger protein 483-like

GO

GO:0003676 GO:0046872 GO:0005634 GO:0008270 GO:0003924 GO:0016020 GO:0003677 GO:0000723 GO:0006260

Length:

345

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02456

Exp number, first 60 AAs:

0.02456

Total prob of N-in:

0.01406

outside

1 - 345

Pi

220.296561

Theta

179.372979

Tajima's D

-1.722544

CLR

1.046536

CSRT

0.0383480825958702

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics