Silkworm Genome Informatics Database

Gene

KWMTBOMO06091

Pre Gene Modal

BGIBMGA001705

Annotation

PREDICTED:_RNA-binding_protein_48_[Papilio_xuthus]

Location

Bomo_Chr11(-):226855-227994 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.58

CDS

ATGTCTGAAAATGAAGAAAAAACTTCGTTATTACCACATCACGTACAACAAGAATTGTGTACGACACGTTTACCTTATCGGCAAGGAAGAAAACTAACTGCGGTGAAGGTCTACACTGTCAACAATGAATCAACTCATCTCTTAGTCTTCGGTGTGCCATCAATAAATTTGAGACAAGAAACCAAGTCCTTAGTGCAGCGGTATGGTGCCATCAAAAAGTTCAACCTAACCAAAGAATATGAGTGCGAGATATTCACTGAAGCATATCACATTCAGTACGAGAAGATACAATCCGCGCGAATAGCAAAGAAGTACTTAGACTGCAAGAACTACTACGGAGGGGTCCTGCACGTGTGCTACGCCCCAGAAATGGAAACGGTCAACGAACTAAAAGAAAAACTAATAGAACGCAGGAAAGATGTGTTCTACAGATTGCACAAGAATGAAAAAGATTTATCCTTTAGCAAAAAAACAGTTGTTAATGAAATTGACGACGTAACCCAAGAAAAAGTCGCGGAGAAAGCTAAATTGAATATGGGCAATTTTAACCTTATACATTCTAATAAAAGGAAGACGAATAATAGTAATTTAGTTAATAAAAGACTTAGAAATAGCCATCATTTAACAGATTGTAAAAAAATCAATGCAAAAATAGATGTTTTAGAAAACAATGTCACGATACAAAAAAGTCCTAAAATTGAATTAAAACACAAAGATAATGTCGAACTACAAAAACGATTGAAGACTGATATTGACATTGTCGATTGTACTAGTACAGAGAGAGAAACGATTACTAACATTAATGAAGCATTGAATTACAATAAATTTGGAAATGAAATAATTAGGAATATCGTTAATAAACCTCCTAATAAAATTATATTTAGTTTTAATAAAAACAGCTAA

Protein

MSENEEKTSLLPHHVQQELCTTRLPYRQGRKLTAVKVYTVNNESTHLLVFGVPSINLRQETKSLVQRYGAIKKFNLTKEYECEIFTEAYHIQYEKIQSARIAKKYLDCKNYYGGVLHVCYAPEMETVNELKEKLIERRKDVFYRLHKNEKDLSFSKKTVVNEIDDVTQEKVAEKAKLNMGNFNLIHSNKRKTNNSNLVNKRLRNSHHLTDCKKINAKIDVLENNVTIQKSPKIELKHKDNVELQKRLKTDIDIVDCTSTERETITNINEALNYNKFGNEIIRNIVNKPPNKIIFSFNKNS

Uniprot

H9IWS2 A0A0N1IAX8 A0A212EVB9 A0A0N0PDZ4 A0A2H1W1C2 A0A2A4K6K3 + More
A0A2W1BCG6 A0A3S2LS05 A0A2H1VUE1 A0A0L7LBE1

Pubmed

19121390 26354079 22118469 28756777 26227816

EMBL

BABH01020960 KQ458725 KPJ05385.1 AGBW02012215 OWR45433.1 KQ460140 + More
KPJ17508.1 ODYU01005737 SOQ46895.1 NWSH01000089 PCG79699.1 KZ150164 PZC72668.1 RSAL01000313 RVE42645.1 ODYU01004502 SOQ44447.1 JTDY01001814 KOB72807.1

Proteomes

UP000005204 UP000053268 UP000007151 UP000053240 UP000218220 UP000283053 + More
UP000037510

PRIDE

H9IWS2

Pfam

PF01697 Glyco_transf_92

Interpro

IPR039599   RBM48        + More
IPR035979   RBD_domain_sf
IPR012677   Nucleotide-bd_a/b_plait_sf
IPR008166   Glyco_transf_92

SUPFAM

SSF54928 SSF54928

Gene 3D

3.30.70.330

ProteinModelPortal

H9IWS2 A0A0N1IAX8 A0A212EVB9 A0A0N0PDZ4 A0A2H1W1C2 A0A2A4K6K3 + More
A0A2W1BCG6 A0A3S2LS05 A0A2H1VUE1 A0A0L7LBE1

KEGG

101740439 no KO assigned | (RefSeq) RNA-binding protein 48

GO

GO:0003676 GO:0000166 GO:0005634 GO:0008270 GO:0003924 GO:0016020 GO:0003677 GO:0000723 GO:0006260

PANTHER

PTHR20957

Length:

300

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01056

Exp number, first 60 AAs:

0.00968

Total prob of N-in:

0.03097

outside

1 - 300

Pi

239.138195

Theta

188.98792

Tajima's D

0.892958

CLR

0.096294

CSRT

0.636018199090046

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics