Gene

KWMTBOMO06090

Pre Gene Modal

BGIBMGA001722

Annotation

PREDICTED:_oocyte_zinc_finger_protein_XlCOF6-like_[Bombyx_mori]

Location

Bomo_Chr11(+):214055-221217      View in EpiBrowser

Full name

Zinc finger protein       + More
Zinc finger protein 235      

Alternative Name

Zinc finger protein 270
Zinc finger protein 93 homolog
Zinc finger protein HZF6

Transcription factor

zf-C2H2

Location in the cell

Nuclear   Reliability : 4.122

CDS

ATGGAAGTCACACCAGTGGTAACTGTGAAATGCGAGCCGGTGGATGTACTCGAGCAAGGCGATATGGACCAGCTGCAGAACCAAAGCGAGCCGGCTCCAGGACACAATGCCGTCAACTATCCACAATACTCCCAACAAATAATAAACAATATGGCATATTATTTTACGGCTAATTCATTGAACACTGAAATTAAATTGGAAACTGACGTGAAACATGAGCCCGAAGAGTCCGAAGATGCTGATGAATCTAAGAAAAAGATCAAAAAGGAAGATAGAGTGAAATGTCCGTTATGCCCTAAGACGTTCAAAAATCAGGCCAACATGAAAAGTCACGTGACGCATTTGCACACCGAGAACGCCGTGGAGTGTCCGCAGTGCAATAGGAACTTTAAATCCTATGCTCACTTGAAATCGCACGTCGATAGCGTCCACGTGGCCGAGGGCGAAGCGAAAGCCTGCGACTTGTGCGGTAAAGAATTCGCCAATAAAAAGAAACTGAGCAACCATAAGTTCTATGCTCACTCCAAGCCCGAAGAAAGGGTGACTTGCCCAATTTGCAATAAATCATTTGCTAAAAAGTACAAACTAAGAGTGCACAACCGTAATGTACACAATCCCGGCGAAGCAGCGAAATGCCCTCAATGCGATAAAGAATATAAAAGCAAGATGCTGCTCCGAAGGCACATGCTGTGGAGCCATCCCGAAGAGGGAAAAACATATGTGTGCGAGGACTGCGGGAAGGAGTTTCCTACTTTCCCCGTGTACAAGAAGCATACCTGGAACGTACACGGCGCCAGTCGCGAGATGACCTGCGAAATATGCCATAGGACGTTGGCATCGAAGAAATCGTGGCTCCGTCATATGCGATGCGTGCACAAGGACGGCAGACCTGCCGCTAAGCAGATGAAGGTCGGTACCTTACCGTGCATGATATGCGACAGAAAGTTCACAACGAACACAGCGCTTTATTGGCACTTGGAGCAAACGCATTCTGAAGTACAACAAAACTCGAAAACCTGCCCCATTTGTTCTAAAAAGTTCACGGAATACTATGTGATGAGGAGGCATCTGGAAATGGTGCATCCCATCGAAACTGCGACCTGTGAGATCTGCAATAAGACCTTTAAATCTGCCGCCAACCTGGAGAGCCACATGCGAGTGACCCACGCCCCGCCAGAAGCGGCCAAGCAGTGCGACATGTGCCAGAAGATATTTAAATGCTCAATGCACTTGCGCATTCACATGAACACCGTCCATCCAAAGGACGGTAAAGCAACTTGTGACATATGCAACCGGGAGTTTGCGTCGAAACGATATCTAGCCTCGCACAAGCAAATACACGTTAAAGTCAGACAGTTTCACTGTGTGATCTGCGGCAAGTCCTTTAAAAGGCAGGTGGATCTGAGCAAGCACACGAGGAAAGTTCACAATAAGAAAAAACCTAAAACTGAAGAGGTGCCAGTATCTAAGTGTCTGAAGTGCGGTACATGTTTTACTAATGATCAGGAGTTGCATGAGCATATAGTGTCATGTGAGAATACCGGGGTCAATCTGTCCATAGTGAAGATCGAAGTTGAGGAGTTGGATGAAGGGCAAGAGGTTTGCATGTGA

Protein

MEVTPVVTVKCEPVDVLEQGDMDQLQNQSEPAPGHNAVNYPQYSQQIINNMAYYFTANSLNTEIKLETDVKHEPEESEDADESKKKIKKEDRVKCPLCPKTFKNQANMKSHVTHLHTENAVECPQCNRNFKSYAHLKSHVDSVHVAEGEAKACDLCGKEFANKKKLSNHKFYAHSKPEERVTCPICNKSFAKKYKLRVHNRNVHNPGEAAKCPQCDKEYKSKMLLRRHMLWSHPEEGKTYVCEDCGKEFPTFPVYKKHTWNVHGASREMTCEICHRTLASKKSWLRHMRCVHKDGRPAAKQMKVGTLPCMICDRKFTTNTALYWHLEQTHSEVQQNSKTCPICSKKFTEYYVMRRHLEMVHPIETATCEICNKTFKSAANLESHMRVTHAPPEAAKQCDMCQKIFKCSMHLRIHMNTVHPKDGKATCDICNREFASKRYLASHKQIHVKVRQFHCVICGKSFKRQVDLSKHTRKVHNKKKPKTEEVPVSKCLKCGTCFTNDQELHEHIVSCENTGVNLSIVKIEVEELDEGQEVCM

Similarity

Belongs to the krueppel C2H2-type zinc-finger protein family.

Keywords

Alternative splicing   Complete proteome   DNA-binding   Metal-binding   Nucleus   Polymorphism   Reference proteome   Repeat   Transcription   Transcription regulation   Zinc   Zinc-finger  

Feature

chain  Zinc finger protein 235
splice variant  In isoform 2.
sequence variant  In dbSNP:rs2125579.

Uniprot

H9IWT9   A0A0L7LSR3   A0A2P6KF50   A0A0X3PR15   A0A0V0JAD1   A0A0X3PMR7   + More
A0A0F8BL91   A0A0X3P1H2   A0A067QID4   A0A0L8FH43   A0A0X3PSM7   A0A2P6K429   A0A0L8H4I9   A0A0X3QBJ4   A0A067QR38   A0A0X3NJ35   A0A3B3S8G7   A0A0L8FSF7   I3KNN5   A0A0L8H2K0   A0A2P6K9A5   A0A0X3NPP4   A0A3P9PIU0   A0A2P6K5T1   I3JNG4   A0A3Q1CKR1   A0A2P6KLC9   G4VM26   A0A3Q0KI60   A0A0G2KG29   A0A0L8G3Z8   A0A0L8I8E2   A0A2J7PGQ9   A0A087YLI0   A0A087X6A4   A0A286XAC5   A0A2P6KCE2   A0A0L8FRA9   A0A3B3UEI5   A0A2J7RCX9   F1QRR7   A0A087TS14   A0A2J7R936   A0A3N0Y7V1   A0A0L8HSI0   A0A0L8FGQ7   A0A0K2USV6   A0A1B6JUW6   A0A067R2B5   A0A0L8HB16   A0A096M5Z7   A0A2P6K8I0   A0A0L8GTP5   G1U8L6   A0A3Q1ITL5   H0WF00   A0A0L8I427   A0A2Y9RY92   A0A3Q3FED3   A0A0L8H343   A0A1U7TGP0   A0A2J7RGR5   A0A2P6KGD7   A0A2P6KHA0   A0A0L8FRQ3   A0A2P6K6Q8   A0A0L8H9L3   A0A340XH73   A0A096LXA5   G3T713   A0A0L8H1D6   A0A0L8G051   F1R2I1   A0A0X3Q172   A0A3Q1J526   G3RSY1   A0A0L8GHW7   A0A3Q2Z8V3   K9J3J3   G3S6S8   A0A341DB76   A0A2U4B5Q6   A0A2K6TV79   H0WE89   A0A341DBV2   A0A341DB70   A0A383YZC7   Q14590   A0A2J7Q6J0   H2RCI3   A0A0G2L9A5   A0A2K5SH10   H9ZFE9   A0A2R9AI52   A0A2K5F2M5   A0A2Y9P7D4   A0A0D9S1I7   A0A0L8GA96   Q14590-2   F6Q7F4  

EC Number

2.1.1.-

Pubmed

19121390    26227816    25835551    24845553    29240929    25186727    + More
22253936    23594743    21993624    22398555    14702039    15057824    15489334    9570955    7865130    16136131    25319552    22722832    17431167   

EMBL

BABH01020959    JTDY01000161    KOB78513.1    MWRG01013681    PRD24960.1    GEEE01008842    + More
JAP54383.1    GEEE01000500    JAP62725.1    GEEE01010297    JAP52928.1    KQ042692    KKF11497.1    GEEE01019568    JAP43657.1    KK869201    KDR08556.1    KQ432511    KOF62726.1    GEEE01010198    JAP53027.1    MWRG01031252    PRD21084.1    KQ419395    KOF83685.1    GEEE01006549    JAP56676.1    KK853465    KDR07425.1    GEEE01023527    JAP39698.1    KQ426934    KOF67603.1    AERX01019990    KQ419593    KOF82995.1    MWRG01019587    PRD22908.1    GEEE01023728    GEEE01013283    JAP39497.1    MWRG01025029    PRD21660.1    AERX01040632    AERX01040633    AERX01040634    MWRG01009396    PRD27104.1    HE601629    CCD80531.1    AL929029    BX255935    CABZ01059001    CABZ01059002    KQ423998    KOF71747.1    KQ416263    KOF97756.1    NEVH01025170    PNF15520.1    AYCK01001272    AYCK01001273    AYCK01010618    AAKN02048224    MWRG01016134    PRD23995.1    KQ427344    KOF67177.1    NEVH01005369    PNF38682.1    CR812792    KK116493    KFM67903.1    NEVH01006721    PNF37349.1    RJVU01051426    ROL41878.1    KQ417381    KOF92152.1    KQ432116    KOF62888.1    HACA01023611    CDW40972.1    GECU01004727    JAT02980.1    KK852805    KDR16118.1    KQ418762    KOF85980.1    MWRG01020661    PRD22641.1    KQ420442    KOF80262.1    CR293532    KQ416628    KOF96104.1    KOF83711.1    NEVH01003759    PNF40013.1    MWRG01012613    PRD25416.1    MWRG01011971    PRD25684.1    KQ427095    KOF67396.1    MWRG01023322    PRD22014.1    KOF85988.1    KOF83002.1    KQ424979    KOF70194.1    CT027586    GEEE01006015    JAP57210.1    CABD030113843    CABD030113844    KQ421769    KOF76459.1    GABZ01000959    JAA52566.1    BX914214    BX928743    AK300317    AC092477    AC138473    BC117215    AF027513    AF027514    X78929    AC084239    NEVH01017468    PNF24205.1    AACZ04019614    NBAG03000106    PNI88952.1    BX663505    BX901892    JU477861    AFH34665.1    AJFE02059581    AJFE02059582    AJFE02059583    AQIB01135996    AQIB01135997    KQ422909    KOF73956.1    JSUE03021839    JSUE03021840    JSUE03021841    JSUE03021842   

Proteomes

UP000005204    UP000037510    UP000027135    UP000053454    UP000261540    UP000005207    + More
UP000242638    UP000257160    UP000008854    UP000000437    UP000235965    UP000028760    UP000005447    UP000261500    UP000054359    UP000001811    UP000265040    UP000248480    UP000261660    UP000189704    UP000265300    UP000007646    UP000001519    UP000264820    UP000252040    UP000245320    UP000233220    UP000261681    UP000005640    UP000002277    UP000233040    UP000240080    UP000233020    UP000248483    UP000029965    UP000006718   

PRIDE

H9IWT9    Q14590   

Pfam

PF00096   zf-C2H2        + More
PF16622   zf-C2H2_11
PF01352   KRAB

Interpro

IPR036236   Znf_C2H2_sf        + More
IPR013087   Znf_C2H2_type       
IPR003656   Znf_BED       
IPR026590   Ssirtuin_cat_dom       
IPR041697   Znf-C2H2_11       
IPR001214   SET_dom       
IPR017114   YY-1-like       
IPR003604   Matrin/U1-like-C_Znf_C2H2       
IPR017125   Znf_PRDM5-like       
IPR011017   TRASH_dom       
IPR036514   SGNH_hydro_sf       
IPR001909   KRAB       
IPR036051   KRAB_dom_sf       
IPR000305   GIY-YIG_endonuc       

SUPFAM

SSF57667   SSF57667        + More
SSF109640   SSF109640       

Gene 3D

3.40.50.1110    

CDD

cd07765  KRAB_A-box

ProteinModelPortal

H9IWT9   A0A0L7LSR3   A0A2P6KF50   A0A0X3PR15   A0A0V0JAD1   A0A0X3PMR7   + More
A0A0F8BL91   A0A0X3P1H2   A0A067QID4   A0A0L8FH43   A0A0X3PSM7   A0A2P6K429   A0A0L8H4I9   A0A0X3QBJ4   A0A067QR38   A0A0X3NJ35   A0A3B3S8G7   A0A0L8FSF7   I3KNN5   A0A0L8H2K0   A0A2P6K9A5   A0A0X3NPP4   A0A3P9PIU0   A0A2P6K5T1   I3JNG4   A0A3Q1CKR1   A0A2P6KLC9   G4VM26   A0A3Q0KI60   A0A0G2KG29   A0A0L8G3Z8   A0A0L8I8E2   A0A2J7PGQ9   A0A087YLI0   A0A087X6A4   A0A286XAC5   A0A2P6KCE2   A0A0L8FRA9   A0A3B3UEI5   A0A2J7RCX9   F1QRR7   A0A087TS14   A0A2J7R936   A0A3N0Y7V1   A0A0L8HSI0   A0A0L8FGQ7   A0A0K2USV6   A0A1B6JUW6   A0A067R2B5   A0A0L8HB16   A0A096M5Z7   A0A2P6K8I0   A0A0L8GTP5   G1U8L6   A0A3Q1ITL5   H0WF00   A0A0L8I427   A0A2Y9RY92   A0A3Q3FED3   A0A0L8H343   A0A1U7TGP0   A0A2J7RGR5   A0A2P6KGD7   A0A2P6KHA0   A0A0L8FRQ3   A0A2P6K6Q8   A0A0L8H9L3   A0A340XH73   A0A096LXA5   G3T713   A0A0L8H1D6   A0A0L8G051   F1R2I1   A0A0X3Q172   A0A3Q1J526   G3RSY1   A0A0L8GHW7   A0A3Q2Z8V3   K9J3J3   G3S6S8   A0A341DB76   A0A2U4B5Q6   A0A2K6TV79   H0WE89   A0A341DBV2   A0A341DB70   A0A383YZC7   Q14590   A0A2J7Q6J0   H2RCI3   A0A0G2L9A5   A0A2K5SH10   H9ZFE9   A0A2R9AI52   A0A2K5F2M5   A0A2Y9P7D4   A0A0D9S1I7   A0A0L8GA96   Q14590-2   F6Q7F4  

PDB

5V3M     E-value=1.2259e-16,     Score=213

KEGG

101740172    no KO assigned | (RefSeq) oocyte zinc finger protein XlCOF6-like

GO

GO:0003676   GO:0003677   GO:0008270   GO:0008168   GO:0000976   GO:0005634   GO:0046872   GO:0006355   GO:0000981   GO:0003700   GO:0003924   GO:0016020   GO:0000723   GO:0006260  

Subcellular location

Nucleus  

Length:

536

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00016

Exp number, first 60 AAs:

0.00014

Total prob of N-in:

0.00202

outside

1  -  536

 

 

Pi

239.47456

Theta

187.570295

Tajima's D

0.986487

CLR

1.942816

CSRT

0.654067296635168

Interpretation

Uncertain