SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO06083
Annotation
PREDICTED:_zinc_finger_protein_ZPR1_[Papilio_xuthus]
Location in the cell
Nuclear   Reliability : 3.489
 

Sequence

CDS
ATGTGTTCCGCCAACCTTAAACCAATGTTCAGAGACCTTACAGCCGAGGACCCCGACCCAGAAGTCACGGAAATCGAGTCATTTTGCATAAATTGTCATTCAAATGGAATGACCAGGGTATTGCTCACCAGGATACCGCACTACAAGAATGTAGTGATAATGTCGTTTTCTTGCGAGGAGTGCGGCTATCAGAACAACGAGATTCAACCAGGAGGAGAATATGAGGAGCTCGGAGTCAGATGGAAGCTGCGTGTTGAATCCCAACAGGATCTGAACAGGCAAGTGGTCAAAAGTGACTACACCAGCGTCAGGATACCCGAGCTGGACTTTGAGATAGCAGCACAGAGTCAGAAAGGGGAGGTGACAACTGTCGAAGGAATTATATCGCGAGCTATAACCGGTCTGAATCAAGATCAAGAATCTAGACGGAGTCAGCACCCCGATGCGGCGGCTAAGATTGACGAGTTTGTGTCTAAGCTTCAAGCATTGAAGGATCTGTCTACTCCTTGGACACTACAGCTTGAGGATATAAGCGGGAATTGCTTCATCGAGAACCCCCAAATGCCGAAGAAGGATCCTCGCTGTGAACGGACCGATTTCAAACGGAGCAAAGCCCAGAACCACCAGCTGGGCATATTCATGCACGACGAGGTGCAAGACGACCTGACCCCGACCCCGCTGACACCCTTCTCGGAGAAGCTCCTGACTCCGGCGGACCCGGCCGAGTGCAGCCTGGAGCAGATGACCGCCGACGAGGTCCTGCAGTTCAGGACCAACTGCCCCGACTGCAACTCGCCCGCGAACACCAACATGAAGATCACCAAAATACCGCACTTCAAGGAAGTTGTCATCATGGCGACGACGTGCGACTACTGCGGACACCGGACCAACGAGGTAAAATCCGGTGGCGGTATAGAAGATATGGGTGTGAGATTTGAGGTCCGGGTGGCCACTAAAGACGACTTCTCCAGAGATATACTCAAGTCGGAGACGTGCAGCATGAGCATCCCGTCGTTGGAGCTGGAGGTGGGGGGCCACGCGCTGGGGGGCCGCTTCACGACCGCCGAGGGCCTACTGCGCGCCACCCGGGACCAGCTCCGGCACTGCCCTGCCCTCACCGGGGACAGCGCGCCGCAACCCGCCCTGCAGCGGTTCATTGAGCGGCTCACCGACGTGCTGGAGCTGAAGGAGCCGGTGACGGTGGTGCTGGACGACCCCGCCGGGAACTCGTACGTGCAGAGCCTGGCCGACGACCCCCTGACCCCCGACGACGGGCTTAAGGTCGAGCGGTACGTGCGCACGTTCGAACAGAACGAGGAGCTGGGGCTCAACGATATGAAGACCGAGAACTACGAGGGGTGCTGA
Protein
MCSANLKPMFRDLTAEDPDPEVTEIESFCINCHSNGMTRVLLTRIPHYKNVVIMSFSCEECGYQNNEIQPGGEYEELGVRWKLRVESQQDLNRQVVKSDYTSVRIPELDFEIAAQSQKGEVTTVEGIISRAITGLNQDQESRRSQHPDAAAKIDEFVSKLQALKDLSTPWTLQLEDISGNCFIENPQMPKKDPRCERTDFKRSKAQNHQLGIFMHDEVQDDLTPTPLTPFSEKLLTPADPAECSLEQMTADEVLQFRTNCPDCNSPANTNMKITKIPHFKEVVIMATTCDYCGHRTNEVKSGGGIEDMGVRFEVRVATKDDFSRDILKSETCSMSIPSLELEVGGHALGGRFTTAEGLLRATRDQLRHCPALTGDSAPQPALQRFIERLTDVLELKEPVTVVLDDPAGNSYVQSLADDPLTPDDGLKVERYVRTFEQNEELGLNDMKTENYEGC

Summary

EMBL
BABH01020944    GAIX01003248    JAA89312.1    KQ458725    KPJ05386.1    KZ150365    + More
PZC71175.1    KQ460140    KPJ17507.1    KQ971354    EFA05991.1    AGBW02012215    OWR45434.1    KQ414663    KOC65226.1    KQ434960    KZC12656.1    LBMM01009575    KMQ88016.1    GL437928    EFN69799.1    NNAY01001054    OXU25327.1    KQ978739    KYN28845.1    KQ978292    KYM95480.1    QOIP01000009    RLU18222.1    KQ982052    KYQ60689.1    KK107119    EZA58618.1    GL888070    EGI68147.1    ADTU01001909    ADTU01001910    DS235307    EEB14556.1    GECZ01003106    JAS66663.1    KZ288351    PBC27347.1    KQ976582    KYM79810.1    GBHO01021647    GBHO01005826    GDHC01010474    GDHC01004726    JAG21957.1    JAG37778.1    JAQ08155.1    JAQ13903.1    ATLV01025015    KE525367    KFB52057.1    GBRD01016488    GBRD01016484    GBRD01015585    JAG50241.1    JRES01001480    KNC22567.1    CH477253    EAT45966.1    AJVK01017152    AJVK01017153    AJVK01017154    KQ435885    KOX69537.1    KQ761246    OAD57930.1    GL448770    EFN83895.1    KB632083    ERL88614.1    APGK01036461    KB740940    ENN77687.1    AXCN02001207    JXUM01080394    KQ563183    KXJ74313.1    CCAG010006115    GGFJ01004687    MBW53828.1    GEZM01037152    GEZM01037151    GEZM01037150    GEZM01037149    GEZM01037148    GEZM01037147    GEZM01037146    GEZM01037145    JAV82133.1    GGFK01006836    MBW40157.1    GGFM01002745    MBW23496.1    GGFK01006932    MBW40253.1    KA644910    AFP59539.1    GGFL01005970    MBW70148.1    GGFJ01004690    MBW53831.1    GGFM01002724    MBW23475.1    GANO01002122    JAB57749.1    GFDF01007163    JAV06921.1    GGFM01002831    MBW23582.1    GFDF01007162    JAV06922.1    AAAB01008898    EAL40533.4    APCN01005809    AXCM01001830    AE014298    AY051889    AAF46456.1    AAK93313.1    GEDC01017023    GEDC01012889    GEDC01003778    JAS20275.1    JAS24409.1    JAS33520.1    JXJN01000820    CH954180    EDV46289.1    CM000162    EDX02172.1    GFDL01013493    JAV21552.1    DS232010    EDS31609.1    ADMH02000180    ETN67468.1    CM000366    EDX17478.1    KK852653    KDR19351.1    KQ981305    KYN42764.1    GDAI01002549    JAI15054.1    UFQS01000542    UFQT01000542    SSX04744.1    SSX25107.1    CVRI01000054    CRL00346.1    CH916371    EDV92458.1    CH902635    EDV33835.1    CP012528    ALC49477.1    UFQT01001948    SSX32210.1    CH379064    EAL31979.2    CH940660    EDW58040.1    GECL01001204    JAP04920.1    GFTR01006302    JAW10124.1    GBBI01000394    JAC18318.1    GAMC01000153    JAC06403.1    CH933810    EDW07393.1    GAKP01002186    JAC56766.1    AJWK01011468   
Pfam
PF03367   zf-ZPR1
Interpro
IPR040141   ZPR1        + More
IPR004457   Znf_ZPR1       
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       
IPR001680   WD40_repeat       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR036322   WD40_repeat_dom_sf       
IPR012934   Znf_AD       
SUPFAM
SSF57667   SSF57667        + More
SSF50978   SSF50978       
Gene 3D
PDB
2QKD     E-value=7.38304e-108,     Score=999

Ontologies

Topology

Length:
454
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00226
outside
1  -  454
 
 

Population Genetic Test Statistics

Pi
210.258822
Theta
186.441053
Tajima's D
0.501083
CLR
0.151466
CSRT
0.511524423778811
Interpretation
Uncertain
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