Silkworm Genome Informatics Database

Gene

KWMTBOMO06064

Pre Gene Modal

BGIBMGA002855

Annotation

PREDICTED:_rhomboid-related_protein_2-like_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr10(-):17280526-17295364 View in EpiBrowser

Location in the cell

PlasmaMembrane Reliability : 3.608

CDS

ATGAAACTTGAAAATGGCAACAAATCCCGCGAACTGTGCGACAGACTGACGAGGGACTCACCTGCTACTGGATGGAAGGTGCTACCAGAAACAAGACTTGCAGCGCAAGCCTGGGTGGAGAATGAAATCCCTGGAGAAAGCAGACAACTGCTAGTTTCCTCGGAAAAACCCCTTCAAATTCACGGTGTAGTCAATCTCAGTGCTCAAAGCTATACCGAGAAAAATCCAAAGAAGAGAAAAAAGAAGCAGAAGAAGACAAATTTACAGAAGCGATTAGAGAGACTCGCGGTCTTATTGAAGCCTCCTTACTTTATAGTTACCATTATCTTTATTATGGTATGCATCCACTTGTTGGTCTCAGAGGAAGTTCGAGACATGCTGGAGTGGACTCCAGAGAAGTGGCGGACAGAACCTTGGCGTCTCCTAACGTACGGCTGTATCCACGCCAATCACCTACATCTAGCACTAAATGCACTTGTAGCTTTAGCTGTAGGTTGGCGCTTAGAAAGAGAACAAAGGTGGTGGCGCCTCGTGCTGTTGTGGTGCGGAGGAGTGATCGCCGGAGCCCTAGGCGCTGGAGTCCTGCAACCCCATGTACCGGTGGTCGGGTCTTCGGCCGCAGTGTACGCACTTCTAACGGCTCATTTACCAAACGTTTGCTTGAGATTTGGCCACATTCCACTGTGGTGGTTCCGTCCATTGTCCGTGGTAGTGCTAAGCGCGTCTGAAGGTTACTGTGCGCTGCTCCCGTCGGTGCCGCCCCCCCAGAGCGCCGCCGCAGCTGCCCGCGCGCCCCCCTCCACTCACATCGCTTGGTCGGCGCACGTCTTGGGAGCTGCTGCAGGAATACCTCTTGCGTTCATCGTTTTCACTGGTGAAAACGAAGGCAAACGCTATATCGTCATAGCTAGAATTGTATCAGCGTTGGTGCTACTTTTAGGAGTGATAATGTCCGCTATACATTTCGCACATGTGACTGAAGAGGACAAGTGA

Protein

MKLENGNKSRELCDRLTRDSPATGWKVLPETRLAAQAWVENEIPGESRQLLVSSEKPLQIHGVVNLSAQSYTEKNPKKRKKKQKKTNLQKRLERLAVLLKPPYFIVTIIFIMVCIHLLVSEEVRDMLEWTPEKWRTEPWRLLTYGCIHANHLHLALNALVALAVGWRLEREQRWWRLVLLWCGGVIAGALGAGVLQPHVPVVGSSAAVYALLTAHLPNVCLRFGHIPLWWFRPLSVVVLSASEGYCALLPSVPPPQSAAAAARAPPSTHIAWSAHVLGAAAGIPLAFIVFTGENEGKRYIVIARIVSALVLLLGVIMSAIHFAHVTEEDK

Uniprot

H9J020 A0A2W1BMT8 A0A194Q3W3 A0A212FEH1 A0A0L7L706 A0A2H1V845 + More
A0A2Z5U791 A0A0C9RLI3 E9J1X3 K7J8A7 A0A195BJV4 A0A195EYR5 A0A158NJ49 A0A151X3K1 A0A195DJT5 F4W779 E2AGP4 A0A026WBJ6 A0A195C325 E2BJZ1 A0A154PCV8

Pubmed

19121390 28756777 26354079 22118469 26227816 21282665 + More
20075255 21347285 21719571 20798317 24508170 30249741

EMBL

BABH01018819 KZ150039 PZC74587.1 KQ459472 KPJ00227.1 AGBW02008947 + More
OWR52113.1 JTDY01002588 KOB71150.1 ODYU01001174 SOQ37023.1 AP017499 BBB06785.1 GBYB01009155 JAG78922.1 GL767674 EFZ13217.1 KQ976453 KYM85453.1 KQ981920 KYN33024.1 ADTU01017459 ADTU01017460 ADTU01017461 KQ982559 KYQ54983.1 KQ980804 KYN12754.1 GL887813 EGI69963.1 GL439375 EFN67392.1 KK107293 QOIP01000005 EZA53430.1 RLU22237.1 KQ978317 KYM95264.1 GL448708 EFN84000.1 KQ434874 KZC09736.1

Proteomes

UP000005204 UP000053268 UP000007151 UP000037510 UP000002358 UP000078540 + More
UP000078541 UP000005205 UP000075809 UP000078492 UP000007755 UP000000311 UP000053097 UP000279307 UP000078542 UP000008237 UP000076502

PRIDE

H9J020

Pfam

PF01694 Rhomboid

Interpro

IPR035952 Rhomboid-like_sf + More
IPR022764 Peptidase_S54_rhomboid_dom

Gene 3D

1.20.1540.10

ProteinModelPortal

H9J020 A0A2W1BMT8 A0A194Q3W3 A0A212FEH1 A0A0L7L706 A0A2H1V845 + More
A0A2Z5U791 A0A0C9RLI3 E9J1X3 K7J8A7 A0A195BJV4 A0A195EYR5 A0A158NJ49 A0A151X3K1 A0A195DJT5 F4W779 E2AGP4 A0A026WBJ6 A0A195C325 E2BJZ1 A0A154PCV8

KEGG

101745314 no KO assigned | (RefSeq) protein rhomboid-like

GO

GO:0004252 GO:0016021 GO:0008234 GO:0008026 GO:0016818 GO:0004003 GO:0003677 GO:0000723 GO:0005634 GO:0006260

Length:

330

Number of predicted TMHs:

7

Exp number of AAs in TMHs:

134.78872

Exp number, first 60 AAs:

0.00016

Total prob of N-in:

0.96985

inside

1 - 96

TMhelix

97 - 119

outside

120 - 143

TMhelix

144 - 166

inside

167 - 172

TMhelix

173 - 195

outside

196 - 198

TMhelix

199 - 221

inside

222 - 227

TMhelix

228 - 250

outside

251 - 269

TMhelix

270 - 292

inside

293 - 298

TMhelix

299 - 321

outside

322 - 330

Pi

23.533575

Theta

20.812962

Tajima's D

0.466985

CLR

1.563079

CSRT

0.507524623768812

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics