Silkworm Genome Informatics Database

Gene

KWMTBOMO06049

Pre Gene Modal

BGIBMGA002858

Annotation

PREDICTED:_protein_CNPPD1_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr10(-):17042717-17045895 View in EpiBrowser

Location in the cell

Extracellular Reliability : 2.101

CDS

ATGTCGAATATATCAAAAAGACGACGGGAAGGGTCAAGGTCCAAGACCAAGGGCATGGGTGATCATAAAGAGTTTTTGAAGCGCATTACAAAGACCCTATACTACGGGCAGCTGCCTTCACTTCCGTGCCTCAGCCTGCCAGTCACTGAGATCTCATGTGAGACCTGGTCTTCTTCACAACGCGGTCGTTCACTGCGCCGACTGCACGCGGATTGGTCGGCGAGTATGGCCCGGGCAGCCTGTGTGTCCCCATGTGCGCTAGTGCTGGCGCTCCTTTACCTCGAGAGACTCAACAAGCACAACCCTAATTATGTAGCGGCGGCTGCACCCTCTGAACTCTTCCTTGTGTCTTTGATGGTAGGTAATAAATTCCTACAAGACGATGGTGAAGACGATGAGGTGATTTGCTCCGAGTGGGCTGCCTCTGGGGGTATGGAACTGAAGCAGCTCAAGAAACTGGAAATTGAATTCCTAAACGCCATAGATTGGAATATTTTTGTGAGCGATGAATCGTTCGAGGCAGGACTGGCGTGGCTGGAGCGGCAGGTTGCGCTGAAGCAGGCGCAGCTCCGCGGCTTCTTCACGTACGGGGACCTGGCGGCCTCCTGCGCCGACGTCGGCCTCTCGCGCCTGCTGCACGGCGCCACGCGCGCCTGCCTCGCGGCCTGCCTCGCGGCCTGCCTCGCCTACACCTCGGGGCTGGTGGCGCTGCTGGCCTCCGCGCTGGTGGTGTCGCACGCCTGGCTCCCCGCCCTCCAGCTCCTAGCCGCTCGAGCAGCCGCGCCACTGAACGACGACCTACGGACCAGCGACTGCCGACCCGACTTGTATACGAACAACGCCACACTGGAGCACCCTGTCGAGTTACTCGCGGAACACTTGACGGAAGCGAGCCTCGTGACCTGCTGCTCTAAATGGACGCAGTACAGAGAGACGGAGTCTCTAAAGAGAAACTGGCATGACCCTGTAACCTTGCAAGGATGGAAGTTTGAACTGTTCTGGTCAACGATTTCAGTTTTTAACTGGCCATACCAAAGTTCATTAGTCAACCCCGTGCAGAGATGGTTGGAAAAGATGAACGAATATGCAGATTTCATCAAACATCGATTCCTCTACCCCGAGTCGGAACCAGACGGGCGGCGAGGCGTCAGGCAGTGCCTCAACTTCAGTAGGCTCAGCTCGTGGGCAGCCAGCTCCTCGGATCGATAG

Protein

MSNISKRRREGSRSKTKGMGDHKEFLKRITKTLYYGQLPSLPCLSLPVTEISCETWSSSQRGRSLRRLHADWSASMARAACVSPCALVLALLYLERLNKHNPNYVAAAAPSELFLVSLMVGNKFLQDDGEDDEVICSEWAASGGMELKQLKKLEIEFLNAIDWNIFVSDESFEAGLAWLERQVALKQAQLRGFFTYGDLAASCADVGLSRLLHGATRACLAACLAACLAYTSGLVALLASALVVSHAWLPALQLLAARAAAPLNDDLRTSDCRPDLYTNNATLEHPVELLAEHLTEASLVTCCSKWTQYRETESLKRNWHDPVTLQGWKFELFWSTISVFNWPYQSSLVNPVQRWLEKMNEYADFIKHRFLYPESEPDGRRGVRQCLNFSRLSSWAASSSDR

Uniprot

H9J023 A0A2H1WTF3 A0A2A4IVB1 A0A194Q9W0 A0A0N0PC44 I4DRG2 + More
S4P4Y7

Pubmed

19121390 26354079 22651552 23622113

EMBL

BABH01018851 ODYU01010920 SOQ56333.1 NWSH01007037 PCG63122.1 KQ459472 + More
KPJ00211.1 KQ460784 KPJ12220.1 AK405103 BAM20502.1 GAIX01005784 JAA86776.1

Proteomes

UP000005204 UP000218220 UP000053268 UP000053240

PRIDE

H9J023

Pfam

PF08613 Cyclin

Interpro

IPR013922 Cyclin_PHO80-like

ProteinModelPortal

H9J023 A0A2H1WTF3 A0A2A4IVB1 A0A194Q9W0 A0A0N0PC44 I4DRG2 + More
S4P4Y7

KEGG

101746129 no KO assigned | (RefSeq) protein CNPPD1

GO

GO:0016021 GO:0019901 GO:0000079 GO:0008234 GO:0008026 GO:0016818 GO:0004003 GO:0003677 GO:0000723 GO:0005634 GO:0006260

Length:

402

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

32.2684400000001

Exp number, first 60 AAs:

0.56963

Total prob of N-in:

0.82524

inside

1 - 225

TMhelix

226 - 248

outside

249 - 402

Pi

12.106727

Theta

15.310344

Tajima's D

-1.013072

CLR

2.609888

CSRT

0.132893355332233

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics