Silkworm Genome Informatics Database

Gene

KWMTBOMO06044

Pre Gene Modal

BGIBMGA002859

Annotation

PREDICTED:_U11/U12_small_nuclear_ribonucleoprotein_48_kDa_protein-like_[Bombyx_mori]

Location

Bomo_Chr10(-):17003357-17008395 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.195

CDS

ATGGAACAAAGACTAAAAACCTTATCAGAATTAGACGTACGGATACAGAAATTTGAAAATGGATTGAGTTCGATACTTCAAACTTTGCAATGGGATAAACAAAAACTTTTCGAGTTTCAGAAAAAAAACTTAATGACCTGTAAATATGACAGTAACCATCGAATACCATCAGAAAAATTGGAAATCCATGAGAATAAGTGCAGGCTGAAGAGCCTTGGATATGATCAAGATCAAATATTTCTGCCAGAACCTTTGGATCCTGACAGTAAGACTGTTGTCAAATTGAATAGAGAGAAAATTACAGACATAATAAACAAAGCTGCCAATTCTGAAAGACTATTTAAAAGAGGTCAGGGACCTGAAGACTCGGAGCCACTGACTGTAGAGCGTTTACAGAGCACGTACACTTGTGATGAGAGGAGAGCTATACATGATGCTGTGGTTGGAGCGGCGCCCACATGTCACGACCTATCCGATCTGGCTTTGCCAAGCACGAGTGGTGAGGGAGAAAAGTCGAAGGAGAGCAAGTCTCGAGTGGAGATACTGGCCGAGCTGAGGGACATGAAGCGCCGCCGGACCAAGTACCGCGTCGCCGCCAAGACGCAAAATTTCTCAGCCGTTCTACGGGATGTCATTAAAACTCAGATGGAACTGTACATCGAAGCACGAAACGGAGTTACGAGAAATAAAAATAATGATAAAACAACAGAAAATGGTACAAACGCACAGCGAGCGTTGCACGGAGCAAACAGTGCGCACACAGAGTGCGGGACTCACTACAGAGATAGGGGCGACACCCGGGCTGGCCTCAACAGACACAACACTACCGCATTTAGACACGGCAGACCGGTGACACGTGCAGACCGACCAGACATGCCAAATGATAGGGAAGCAACTAGAGACGTATACAAAAAGCATACACGTGAGCGCCATGAATACAGAGATACGCCTCGGAGAAGAGATGACTCGAGGAACGGAACACGACAATATTATAATAAAGAATCAAGCCATCGCAGGAGCAGGTCAAGGGATAGAAGCAAAAGTGAGAGATACAGCAGAAACAATGATCACACGAGGAGAAGCGAAAGGAGAGATGGTAAAGAGAGACACAAGAAGCACGACTCCGACTATCAGTACAAGCGAGAAACCGTAAAACGCAAGCGACTCTAA

Protein

MEQRLKTLSELDVRIQKFENGLSSILQTLQWDKQKLFEFQKKNLMTCKYDSNHRIPSEKLEIHENKCRLKSLGYDQDQIFLPEPLDPDSKTVVKLNREKITDIINKAANSERLFKRGQGPEDSEPLTVERLQSTYTCDERRAIHDAVVGAAPTCHDLSDLALPSTSGEGEKSKESKSRVEILAELRDMKRRRTKYRVAAKTQNFSAVLRDVIKTQMELYIEARNGVTRNKNNDKTTENGTNAQRALHGANSAHTECGTHYRDRGDTRAGLNRHNTTAFRHGRPVTRADRPDMPNDREATRDVYKKHTRERHEYRDTPRRRDDSRNGTRQYYNKESSHRRSRSRDRSKSERYSRNNDHTRRSERRDGKERHKKHDSDYQYKRETVKRKRL

Uniprot

A0A3L8E4J7 A0A154PF14 A0A2P8YQB3 A0A2K5M552 M3XJF9

Pubmed

30249741 29403074 9215903

EMBL

QOIP01000001 RLU27546.1 KQ434890 KZC10449.1 PYGN01000436 PSN46413.1 + More
AFYH01208930 AFYH01208931 AFYH01208932 AFYH01208933 AFYH01208934

Proteomes

UP000279307 UP000076502 UP000245037 UP000233060 UP000008672

Pfam

PF05253 zf-U11-48K

Interpro

IPR036236   Znf_C2H2_sf        + More
IPR022776   TRM13/UPF0224_CHHC_Znf_dom
IPR032845   Snrnp48

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

A0A3L8E4J7 A0A154PF14 A0A2P8YQB3 A0A2K5M552 M3XJF9

PDB

2VY5 E-value=0.0829726, Score=83

KEGG

101736079 K13156 U11/U12 small nuclear ribonucleoprotein 48 kDa protein | (RefSeq) U11/U12 small nuclear ribon

GO

GO:0005654 GO:0005689 GO:0005829

PANTHER

PTHR21402:SF10

Length:

389

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02587

outside

1 - 389

Pi

26.500685

Theta

7.709531

Tajima's D

0.199367

CLR

1.465687

CSRT

0.441977901104945

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics