Gene

KWMTBOMO06039  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA002862

Annotation

ring_finger_protein_5_[Bombyx_mori]

Location

Bomo_Chr10(-):16908161-16912165      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 2.678

CDS

ATGGCGGAGACTAGTCAAGCGCGAGCGAGCCCCTCGGCGCCTGGGGGCGACGCTGGTGGCGAAGAAGACAAACATGACGAAAGAATGCTAGAATGCAACATCTGTCTGGACACAGCCCGTGATGCAGTCGTCAGTATGTGCGGCCACCTCTTCTGCTGGCCATGTTTACATCAATGGTTGGAAACCAGACCCAGTCGGCAAGTCTGTCCTGTTTGCAAGGCTGCCATCAGCAGAGAGAAAGTGATCCCGCTCTATGGAAGAGGAAACACAAAGCAGGAAGACCCAAGAAACAAGGTGCCCCCCCGGCCGGCAGGACAGCGCACGGAGCCGGAGAGTACGAGCGGCTTCCCAGGTTTCGGCTTCGGCGAGGGATTCCACATGTCGTTCGGGATAGGAGCCTTCCCGTTTGGAATTTTCACCTCGACATTTAATTTTGGTGATCCAAGGCCTAGCGCCGCGCCGCGCGGTACGGCCCAGTTCGAAGAAGAGCAGTTCCTATCGAAGATATTCCTGTGGGTCGCTATCCTGTTCGTGCTGTGGCTGGTGTTCGCCTGA

Protein

MAETSQARASPSAPGGDAGGEEDKHDERMLECNICLDTARDAVVSMCGHLFCWPCLHQWLETRPSRQVCPVCKAAISREKVIPLYGRGNTKQEDPRNKVPPRPAGQRTEPESTSGFPGFGFGEGFHMSFGIGAFPFGIFTSTFNFGDPRPSAAPRGTAQFEEEQFLSKIFLWVAILFVLWLVFA

Uniprot

Q1HQ75   A0A2H1VYZ3   A0A3S2P708   A0A0N1IBG5   A0A194Q3T6   A0A212FNZ8   + More
A0A1E1WCP8   A0A2J7PD34   D6X296   A0A067R8U7   A0A026VSV0   A0A1Y1KU12   E2BGW7   A0A1Y1KVF0   A0A195ECG0   F4WNR4   A0A195B8N1   A0A195FW07   A0A158NVS4   A0A151IP46   A0A1B0GKM2   A0A0L7RJJ5   A0A336KLE7   A0A0C9PYA9   A0A1L8DSK8   A0A2A3EQ72   V9IMU0   A0A088AVT4   A0A1W4X226   A0A0M8ZS27   A0A0K8TPV9   N6U5V1   A0A232EWX1   K7IPP1   A0A0L0CK90   A0A1A9WXX7   A0A1A9XAY3   A0A1B0BK11   Q2PQM4   A0A1A9Z1U4   A0A0A1WUH7   A0A1A9UY06   A0A0K8UVW1   A0A034W6C2   A0A310SWV3   A0A3L8DCP2   T1JIX0   T1PE85   E0VLP8   A0A1I8MDX0   B4HC03   B4H8A7   A0A0T6B001   A0A3B0KMW9   B4H8A8   W8C5P2   A0A1L8EFU9   A0A1L8EFE8   A0A1L8EFR2   A0A0M3QZ00   Q9VXP1   B3NXJ8   A0A1I8P5I5   B4PX71   A0A1W4V3I6   B4JJP8   B4L4E2   B4M2R2   A0A1B6LL54   B4IKD4   E9HR77   A0A2P8Z166   B4R5I7   A0A151XBW7   A0A1B6C5T3   A0A0P4W3Z2   A0A069DPY8   A0A087UTJ1   A0A210Q834   A0A164NV65   A0A0P5A3P5   A0A0P5EJU5   A0A1J1IM63   A0A0N8A3Y6   A0A0P5BGS1   A0A0P5UXQ0   A0A0P5LWX8   A0A0P5BV51   A0A0P4ZS04   A0A0P5UYU1   R4WD90   A0A0V0G2Y7   A0A0P5A9V9   A0A0P6IET9   A0A0P6EXD0   A0A0P5U0E4   A0A023F9X7   A0A2S2NAB5   A0A2S2QIB9   A0A0P6C8S5  

Pubmed

19121390    26354079    22118469    18362917    19820115    24845553    + More
24508170    28004739    20798317    21719571    21347285    26369729    23537049    28648823    20075255    26108605    16907828    20353571    25830018    25348373    30249741    20566863    25315136    17994087    24495485    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    18057021    17550304    21292972    29403074    27129103    26334808    28812685    23691247    25474469   

EMBL

BABH01018860    DQ443177    ABF51266.1    ODYU01005004    SOQ45454.1    RSAL01000262    + More
RVE43329.1    KQ461186    KPJ07364.1    KQ459472    KPJ00203.1    AGBW02004392    OWR55420.1    GDQN01006347    JAT84707.1    NEVH01026394    PNF14246.1    KQ971371    EFA10232.1    KK852620    KDR20071.1    KK108145    EZA46853.1    GEZM01076734    JAV63690.1    GL448228    EFN85099.1    GEZM01076737    GEZM01076736    GEZM01076735    JAV63685.1    KQ979074    KYN22796.1    GL888237    EGI64257.1    KQ976565    KYM80549.1    KQ981215    KYN44502.1    ADTU01002902    KQ976892    KYN07236.1    AJWK01030698    AJWK01030699    KQ414582    KOC70896.1    UFQS01000200    UFQS01000597    UFQT01000200    UFQT01000597    SSX01226.1    SSX05227.1    SSX21606.1    GBYB01006523    GBYB01006524    GBYB01006528    JAG76290.1    JAG76291.1    JAG76295.1    GFDF01004717    JAV09367.1    KZ288198    PBC33654.1    JR053399    AEY61919.1    KQ435922    KOX68483.1    GDAI01001437    JAI16166.1    APGK01038500    KB740960    KB631698    ENN76990.1    ERL85468.1    NNAY01001812    OXU22852.1    JRES01000292    KNC32681.1    JXJN01015764    DQ307199    EZ422228    ABC25099.1    ADD18504.1    GBXI01012026    JAD02266.1    GDHF01021819    GDHF01001187    JAI30495.1    JAI51127.1    GAKP01009102    GAKP01009101    GAKP01009100    JAC49852.1    KQ759817    OAD62763.1    QOIP01000010    RLU17912.1    JH431968    KA646263    AFP60892.1    DS235278    EEB14304.1    CH479274    EDW40028.1    CH479222    EDW34922.1    EDW40027.1    LJIG01022506    KRT80215.1    OUUW01000011    SPP86481.1    EDW34923.1    GAMC01008951    JAB97604.1    GFDG01001346    JAV17453.1    GFDG01001347    JAV17452.1    GFDG01001344    JAV17455.1    CP012528    ALC48563.1    AE014298    AY060297    AAF48517.1    AAL25336.1    CH954180    EDV46957.1    KQS30296.1    KQS30297.1    CM000162    EDX01834.1    KRK06355.1    KRK06356.1    KRK06357.1    CH916370    EDV99800.1    CH933810    EDW07420.2    KRF94041.1    KRF94042.1    KRF94043.1    KRF94044.1    CH940651    EDW65966.2    KRF82508.1    KRF82509.1    GEBQ01015549    JAT24428.1    CH480852    EDW51526.1    GL732732    EFX65759.1    PYGN01000245    PSN50257.1    CM000366    EDX18032.1    KQ982316    KYQ57853.1    GEDC01028693    GEDC01024730    GEDC01021784    GEDC01007086    JAS08605.1    JAS12568.1    JAS15514.1    JAS30212.1    GDKW01000490    JAI56105.1    GBGD01003192    JAC85697.1    KK121536    KFM80680.1    NEDP02004652    OWF44891.1    LRGB01002801    KZS06268.1    GDIP01204396    GDIQ01123754    JAJ19006.1    JAL27972.1    GDIP01145458    JAJ77944.1    CVRI01000054    CRL00166.1    GDIP01184849    JAJ38553.1    GDIP01184850    JAJ38552.1    GDIP01106856    JAL96858.1    GDIQ01172985    JAK78740.1    GDIP01180190    JAJ43212.1    GDIP01210447    JAJ12955.1    GDIP01106857    JAL96857.1    AK417329    BAN20544.1    GECL01003610    JAP02514.1    GDIP01206450    JAJ16952.1    GDIQ01007145    JAN87592.1    GDIQ01057226    JAN37511.1    GDIP01123905    JAL79809.1    GBBI01000908    JAC17804.1    GGMR01001524    MBY14143.1    GGMS01008240    MBY77443.1    GDIP01011436    JAM92279.1   

Proteomes

UP000005204    UP000283053    UP000053240    UP000053268    UP000007151    UP000235965    + More
UP000007266    UP000027135    UP000053097    UP000008237    UP000078492    UP000007755    UP000078540    UP000078541    UP000005205    UP000078542    UP000092461    UP000053825    UP000242457    UP000005203    UP000192223    UP000053105    UP000019118    UP000030742    UP000215335    UP000002358    UP000037069    UP000091820    UP000092443    UP000092460    UP000092445    UP000078200    UP000279307    UP000009046    UP000095301    UP000008744    UP000268350    UP000092553    UP000000803    UP000008711    UP000095300    UP000002282    UP000192221    UP000001070    UP000009192    UP000008792    UP000001292    UP000000305    UP000245037    UP000000304    UP000075809    UP000054359    UP000242188    UP000076858    UP000183832   

PRIDE

Q1HQ75    Q9VXP1   

Pfam

PF00097   zf-C3HC4

Interpro

IPR001841   Znf_RING        + More
IPR017907   Znf_RING_CS       
IPR013083   Znf_RING/FYVE/PHD       
IPR018957   Znf_C3HC4_RING-type       

Gene 3D

3.30.40.10    

ProteinModelPortal

Q1HQ75   A0A2H1VYZ3   A0A3S2P708   A0A0N1IBG5   A0A194Q3T6   A0A212FNZ8   + More
A0A1E1WCP8   A0A2J7PD34   D6X296   A0A067R8U7   A0A026VSV0   A0A1Y1KU12   E2BGW7   A0A1Y1KVF0   A0A195ECG0   F4WNR4   A0A195B8N1   A0A195FW07   A0A158NVS4   A0A151IP46   A0A1B0GKM2   A0A0L7RJJ5   A0A336KLE7   A0A0C9PYA9   A0A1L8DSK8   A0A2A3EQ72   V9IMU0   A0A088AVT4   A0A1W4X226   A0A0M8ZS27   A0A0K8TPV9   N6U5V1   A0A232EWX1   K7IPP1   A0A0L0CK90   A0A1A9WXX7   A0A1A9XAY3   A0A1B0BK11   Q2PQM4   A0A1A9Z1U4   A0A0A1WUH7   A0A1A9UY06   A0A0K8UVW1   A0A034W6C2   A0A310SWV3   A0A3L8DCP2   T1JIX0   T1PE85   E0VLP8   A0A1I8MDX0   B4HC03   B4H8A7   A0A0T6B001   A0A3B0KMW9   B4H8A8   W8C5P2   A0A1L8EFU9   A0A1L8EFE8   A0A1L8EFR2   A0A0M3QZ00   Q9VXP1   B3NXJ8   A0A1I8P5I5   B4PX71   A0A1W4V3I6   B4JJP8   B4L4E2   B4M2R2   A0A1B6LL54   B4IKD4   E9HR77   A0A2P8Z166   B4R5I7   A0A151XBW7   A0A1B6C5T3   A0A0P4W3Z2   A0A069DPY8   A0A087UTJ1   A0A210Q834   A0A164NV65   A0A0P5A3P5   A0A0P5EJU5   A0A1J1IM63   A0A0N8A3Y6   A0A0P5BGS1   A0A0P5UXQ0   A0A0P5LWX8   A0A0P5BV51   A0A0P4ZS04   A0A0P5UYU1   R4WD90   A0A0V0G2Y7   A0A0P5A9V9   A0A0P6IET9   A0A0P6EXD0   A0A0P5U0E4   A0A023F9X7   A0A2S2NAB5   A0A2S2QIB9   A0A0P6C8S5  

PDB

1JM7     E-value=9.30283e-06,     Score=113

KEGG

100101162    K10666 E3 ubiquitin-protein ligase RNF5 [EC:2.3.2.27] | (RefSeq) ring finger protein 5

PATHWAY

04141    Protein processing in endoplasmic reticulum - Bombyx mori (domestic silkworm)

GO

GO:0016021   GO:0016874   GO:0044390   GO:0006511   GO:0061630   GO:0036513   GO:0071712   GO:0046872   GO:0004842   GO:0008270   GO:0016567   GO:0005515   GO:0008026   GO:0016818   GO:0004003   GO:0003677   GO:0000723   GO:0005634   GO:0006260  

Length:

184

Number of predicted TMHs:

2

Exp number of AAs in TMHs:

37.11653

Exp number, first 60 AAs:

0.09586

Total prob of N-in:

0.33774

outside

1  -  123

TMhelix

124  -  146

inside

147  -  165

TMhelix

166  -  183

outside

184  -  184

 

 

Pi

20.357858

Theta

20.393025

Tajima's D

-0.337051

CLR

10.878941

CSRT

0.284335783210839

Interpretation

Uncertain