Gene

KWMTBOMO06038  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA002837

Annotation

PREDICTED:_pre-mRNA-processing_factor_19_[Bombyx_mori]

Location

Bomo_Chr10(+):16893156-16900896      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.951

CDS

ATGTCTCTCTATTGTGCGATATCAAATGAAGTTCCCGAAGTACCAGTGGTATCACCTACGTCAGGAGCTGTGTTTGAAAGGAGAATCATTGAGAAGTACATAATAGAAAATGGCGTGGATCCTATTAACGGCAAGGAGTTGAGAGTTGAGGACCTTATTGAGATCAAAACACCACCTATAGTAAAGCCAAAACCTCCAAGTGCCACATCAATCCCTGCCACACTGAAAAGCATGCAAGATGAGTGGGACGCCCTGATGTTACATGCCTTCACACAGAGACAGCAGTTGCAGACTGCTAGACAAGAATTAAGTCATGCATTGTACCAACACGACGCAGCGTGTCGTGTGATAGCCCGACTCACAAAGGAGGTGACGGCGGCGCGAGAGGCCCTCGCCACACTGAAACCGCAGGCCGGCATTGCAGCACCCCAAGCACCACACCCCACGGAGGCGTCAGCAGGCAGTGCGGGAGCAACAGGCATGTCTGCGGACGTGGTGTCTCGTCTGCAGGAGCGCGCCACCGCACTCACGCAGGAACGGAAGCGCCGAGGCCGCACCCTGCCCGAGGGACTGCTGGCACCAGAGCAGATCAGAGCATTCCTCACTCTCGCATCGCATCCTGGTCTTCATTCAGCCAGTGTTCCTGGTATCCTATCTCTGGACATCAATCCATCCGATCACAGTAAACTTTTGACTGGAGGAAACGATCGTAACGCAACAGTCTTTAATAAGGATACTGAACAAGTTGTGGCCATTCTCAAAGGTCACACCAAGAAAGTCACCAGGGTTATATACCATCCGGATGAAGATACGGTCATCACAGCCTCACCAGATCATACCATACGGGTTTGGAATGTGCCAACATCTCAAACAACGGCAATACTACGTTCTCACGACGGTCCAGTGACCGGCCTGTCCCTGCATCCAACCGGAGACTATGTACTCTCAACCTCTTCAGACCAACACTGGGCGTTCTCAGACATTCGCACCGGACAACTTCTGACAAAAGTCAGTGACTTTTCTGGAGTGAGTCTCACAACTGCACAATTCCATCCGGACGGTCTCATTTTTGGTACTGGAACGGAAAACTCACAAGTGAAGATTTGGGATCTAAAGGAGCAAAGCAATGTAGCCAATTTCCCTGGTCACGTAGGACCAGTTACTTCCATTTCCTTCTCGGAGAATGGGTACTATTTAGCCACAGCTGCTGAAGACTCATGCGTTAAATTATGGGATTTGAGAAAACTAAAGAACTTTAAGACCATTCAGTTGGAAGAAAACTATGCTATCAAAGAGTTGTGTTTCGACCAAAGCGGTACATATTTAGCCATAGCCGGTACTGATGTGAGGGTCTACTTGTGCAGACAGTGGCAGGAATTGAAGGTGTTCAATGATCACACTGCTTCGGCCACCGGTGTCAGGTTCGGAAAGAACGCACAGTATCTCGCTTCCACCAGCATGGACCGGACGCTCAAACTTTACGGGATAGAATAA

Protein

MSLYCAISNEVPEVPVVSPTSGAVFERRIIEKYIIENGVDPINGKELRVEDLIEIKTPPIVKPKPPSATSIPATLKSMQDEWDALMLHAFTQRQQLQTARQELSHALYQHDAACRVIARLTKEVTAAREALATLKPQAGIAAPQAPHPTEASAGSAGATGMSADVVSRLQERATALTQERKRRGRTLPEGLLAPEQIRAFLTLASHPGLHSASVPGILSLDINPSDHSKLLTGGNDRNATVFNKDTEQVVAILKGHTKKVTRVIYHPDEDTVITASPDHTIRVWNVPTSQTTAILRSHDGPVTGLSLHPTGDYVLSTSSDQHWAFSDIRTGQLLTKVSDFSGVSLTTAQFHPDGLIFGTGTENSQVKIWDLKEQSNVANFPGHVGPVTSISFSENGYYLATAAEDSCVKLWDLRKLKNFKTIQLEENYAIKELCFDQSGTYLAIAGTDVRVYLCRQWQELKVFNDHTASATGVRFGKNAQYLASTSMDRTLKLYGIE

Uniprot

H9J002   A0A2H1VX99   A0A0N1PFG2   A0A194Q3T9   A0A212FNU6   A0A3S2LBV7   + More
A0A336MXK8   A0A0K8U5H6   Q16EG4   A0A0A1WXV7   A0A034WAP5   B0WVX1   A0A182GUX5   W8BCS9   A0A067RB72   A0A1B0CS76   A0A1Q3EWD9   A0A182YML7   A0A182MM62   A0A1Y1L9X7   A0A1L8DH12   A0A195B7M9   A0A158NV47   A0A2J7PD45   A0A182N915   F4WNN4   A0A0K8WAF2   A0A2C9GRR4   A0A182UPK1   A0A182UBA7   A0A182KQM9   A0A182XLJ8   Q7PTA2   A0A182J3V7   A0A151I916   A0A182R3I8   E2AHR8   A0A0K8VJX1   A0A3L8DBN2   A0A182WJR4   A0A0J7KEP0   A0A1W4W6C9   A0A182QZ23   A0A195FV67   A0A2M4BKV5   A0A1J1IAU6   U5EZB1   A0A2M4ARE4   A0A1I8JSP1   W5J573   A0A084WES2   E2BKD6   A0A1B0G1G6   A0A1A9UR97   A0A154PJ21   A0A1A9XDF1   A0A1A9WYV6   A0A182PP33   A0A1B6CAU8   A0A0A9X6C4   A0A2A3EPB8   A0A088AVT5   Q28YR7   B4GIY7   A0A0C9RDV5   A0A182K2E2   A0A1I8N321   R4WQ37   A0A310SJF0   A0A0L7RJD0   A0A1B0AFU0   N6U2X2   A0A3B0J7G6   A0A232FE20   B3MDG5   A0A1W4VQE0   A0A224XNM4   A0A0V0G7K8   A0A069DUR2   A0A0P4VU40   B4P4D8   B3NMT4   A0A0J9RFW0   E9J0C8   Q7KLW9   A0A1I8PTQ7   A0A139WBN5   B4KM96   B4NMY2   B4HNP7   B4LNJ0   T1HIP9   A0A1I8PTN0   B4J4P2   E9GHW8   J9JYK7   A0A0P6ALA2   A0A0P5PUT8   A0A0P5I595   A0A0P5H5H0  

Pubmed

19121390    26354079    22118469    17510324    25830018    25348373    + More
26483478    24495485    24845553    25244985    28004739    21347285    21719571    20966253    12364791    14747013    17210077    20798317    30249741    20920257    23761445    24438588    25401762    26823975    15632085    17994087    25315136    23691247    23537049    28648823    26334808    27129103    17550304    22936249    21282665    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    18362917    19820115    21292972   

EMBL

BABH01018862    BABH01018863    ODYU01005004    SOQ45455.1    KQ461186    KPJ07365.1    + More
KQ459472    KPJ00202.1    AGBW02004392    OWR55418.1    RSAL01000262    RVE43328.1    UFQS01001291    UFQS01003365    UFQT01001291    UFQT01003365    SSX10146.1    SSX34910.1    GDHF01030523    JAI21791.1    CH478747    CH477773    EAT32620.1    EAT36374.1    GBXI01010796    JAD03496.1    GAKP01008079    JAC50873.1    DS232134    EDS35803.1    JXUM01018692    KQ560519    KXJ82013.1    GAMC01010083    JAB96472.1    KK852620    KDR20058.1    AJWK01025716    AJWK01025717    GFDL01015421    JAV19624.1    AXCM01002191    GEZM01061490    JAV70434.1    GFDF01008373    JAV05711.1    KQ976565    KYM80521.1    ADTU01002875    NEVH01026394    PNF14254.1    GL888237    EGI64227.1    GDHF01004146    JAI48168.1    APCN01000178    AAAB01008807    EAA04221.5    KQ978316    KYM95305.1    GL439579    EFN66997.1    GDHF01013479    JAI38835.1    QOIP01000010    RLU17920.1    LBMM01008786    KMQ88641.1    AXCN02000540    KQ981215    KYN44535.1    GGFJ01004544    MBW53685.1    CVRI01000042    CRK95561.1    GANO01001112    JAB58759.1    GGFK01009847    MBW43168.1    ADMH02002070    ETN59627.1    ATLV01023246    KE525341    KFB48716.1    GL448783    EFN83860.1    CCAG010012985    KQ434936    KZC11881.1    GEDC01026893    JAS10405.1    GBHO01029226    GBRD01006849    GDHC01020462    JAG14378.1    JAG58972.1    JAP98166.1    KZ288198    PBC33653.1    CM000071    EAL25899.1    CH479183    EDW36405.1    GBYB01006525    JAG76292.1    AK417806    BAN21021.1    KQ759817    OAD62761.1    KQ414582    KOC70898.1    APGK01044532    KB741026    KB632309    ENN74961.1    ERL92066.1    OUUW01000001    SPP75852.1    NNAY01000383    OXU28770.1    CH902619    EDV36413.1    GFTR01006805    JAW09621.1    GECL01002195    JAP03929.1    GBGD01001209    JAC87680.1    GDKW01001049    JAI55546.1    CM000158    EDW91624.1    CH954179    EDV55088.1    CM002911    KMY94852.1    GL767444    EFZ13724.1    AF160906    AE013599    AAD46846.1    AAF57684.1    KQ971372    KYB25334.1    CH933808    EDW08760.1    CH964282    EDW85721.1    CH480816    EDW48466.1    CH940648    EDW62170.1    ACPB03007889    CH916367    EDW02747.1    GL732545    EFX80977.1    ABLF02036036    GDIP01027955    JAM75760.1    GDIQ01123889    GDIQ01053671    GDIQ01049170    LRGB01000024    JAL27837.1    KZS21804.1    GDIQ01223298    JAK28427.1    GDIQ01231040    GDIQ01121389    JAK20685.1   

Proteomes

UP000005204    UP000053240    UP000053268    UP000007151    UP000283053    UP000008820    + More
UP000002320    UP000069940    UP000249989    UP000027135    UP000092461    UP000076408    UP000075883    UP000078540    UP000005205    UP000235965    UP000075884    UP000007755    UP000075840    UP000075903    UP000075902    UP000075882    UP000076407    UP000007062    UP000075880    UP000078542    UP000075900    UP000000311    UP000279307    UP000075920    UP000036403    UP000192223    UP000075886    UP000078541    UP000183832    UP000069272    UP000000673    UP000030765    UP000008237    UP000092444    UP000078200    UP000076502    UP000092443    UP000091820    UP000075885    UP000242457    UP000005203    UP000001819    UP000008744    UP000075881    UP000095301    UP000053825    UP000092445    UP000019118    UP000030742    UP000268350    UP000215335    UP000007801    UP000192221    UP000002282    UP000008711    UP000000803    UP000095300    UP000007266    UP000009192    UP000007798    UP000001292    UP000008792    UP000015103    UP000001070    UP000000305    UP000007819    UP000076858   

PRIDE

H9J002   

Pfam

PF00400   WD40        + More
PF04564   U-box
PF08606   Prp19
PF01873   eIF-5_eIF-2B
PF00010   HLH

Interpro

IPR020472   G-protein_beta_WD-40_rep        + More
IPR038959   Prp19       
IPR019775   WD40_repeat_CS       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR001680   WD40_repeat       
IPR013083   Znf_RING/FYVE/PHD       
IPR036322   WD40_repeat_dom_sf       
IPR013915   Pre-mRNA_splic_Prp19       
IPR017986   WD40_repeat_dom       
IPR003613   Ubox_domain       
IPR016190   Transl_init_fac_IF2/IF5_Zn-bd       
IPR002735   Transl_init_fac_IF2/IF5       
IPR016189   Transl_init_fac_IF2/IF5_N       
IPR036638   HLH_DNA-bd_sf       
IPR011598   bHLH_dom       

SUPFAM

SSF50978   SSF50978        + More
SSF100966   SSF100966       
SSF75689   SSF75689       
SSF47459   SSF47459       

Gene 3D

2.130.10.10     3.30.40.10     4.10.280.10    

CDD

cd00083  HLH

ProteinModelPortal

H9J002   A0A2H1VX99   A0A0N1PFG2   A0A194Q3T9   A0A212FNU6   A0A3S2LBV7   + More
A0A336MXK8   A0A0K8U5H6   Q16EG4   A0A0A1WXV7   A0A034WAP5   B0WVX1   A0A182GUX5   W8BCS9   A0A067RB72   A0A1B0CS76   A0A1Q3EWD9   A0A182YML7   A0A182MM62   A0A1Y1L9X7   A0A1L8DH12   A0A195B7M9   A0A158NV47   A0A2J7PD45   A0A182N915   F4WNN4   A0A0K8WAF2   A0A2C9GRR4   A0A182UPK1   A0A182UBA7   A0A182KQM9   A0A182XLJ8   Q7PTA2   A0A182J3V7   A0A151I916   A0A182R3I8   E2AHR8   A0A0K8VJX1   A0A3L8DBN2   A0A182WJR4   A0A0J7KEP0   A0A1W4W6C9   A0A182QZ23   A0A195FV67   A0A2M4BKV5   A0A1J1IAU6   U5EZB1   A0A2M4ARE4   A0A1I8JSP1   W5J573   A0A084WES2   E2BKD6   A0A1B0G1G6   A0A1A9UR97   A0A154PJ21   A0A1A9XDF1   A0A1A9WYV6   A0A182PP33   A0A1B6CAU8   A0A0A9X6C4   A0A2A3EPB8   A0A088AVT5   Q28YR7   B4GIY7   A0A0C9RDV5   A0A182K2E2   A0A1I8N321   R4WQ37   A0A310SJF0   A0A0L7RJD0   A0A1B0AFU0   N6U2X2   A0A3B0J7G6   A0A232FE20   B3MDG5   A0A1W4VQE0   A0A224XNM4   A0A0V0G7K8   A0A069DUR2   A0A0P4VU40   B4P4D8   B3NMT4   A0A0J9RFW0   E9J0C8   Q7KLW9   A0A1I8PTQ7   A0A139WBN5   B4KM96   B4NMY2   B4HNP7   B4LNJ0   T1HIP9   A0A1I8PTN0   B4J4P2   E9GHW8   J9JYK7   A0A0P6ALA2   A0A0P5PUT8   A0A0P5I595   A0A0P5H5H0  

PDB

6QDV     E-value=0,     Score=1638

KEGG

101746688    K10599 pre-mRNA-processing factor 19 [EC:2.3.2.27] | (RefSeq) pre-mRNA-processing factor 19

PATHWAY

03040    Spliceosome - Bombyx mori (domestic silkworm)
04120    Ubiquitin mediated proteolysis - Bombyx mori (domestic silkworm)

GO

GO:0000974   GO:0000398   GO:0006281   GO:0061630   GO:0004842   GO:0071006   GO:0000349   GO:0071013   GO:0003743   GO:0000381   GO:0006325   GO:0016567   GO:0071011   GO:0005681   GO:0046983   GO:0005515   GO:0008026   GO:0016818   GO:0004003   GO:0003677   GO:0000723   GO:0005634   GO:0006260  

PANTHER

PTHR43995  

Length:

497

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00249

Exp number, first 60 AAs:

0.00061

Total prob of N-in:

0.00218

outside

1  -  497

 

 

Pi

18.939039

Theta

21.504794

Tajima's D

-1.194223

CLR

1.692377

CSRT

0.102694865256737

Interpretation

Uncertain