Gene

KWMTBOMO06029  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA002869

Annotation

MyD88_[Antheraea_pernyi]

Location

Bomo_Chr10(-):16767883-16771981      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.397

CDS

ATGCAGTTGAAAATGGCCAGCGACTCTGATATAAACAATCTGCCGTTATTAATGATTCCATATAAAACAAGACAAATGTTATCGTGCCTGTTGAATACTAAAAAAATTATACCTAGCGATGGACCTGATAAGCTGCCAAGAGACTGGCGCGGCTTAGCGTCGCTAGTTGGAATATCATCACAGGAAGCTGGTTCCATCCACCAGTGTAGCAATAAGACTGATAAAGTACTAGAGATATGGCAGAGAAACGGGTCTCCGACTGTTGGCCAACTTCTAGAATTTCTGCAGCGTTTGGACAGATTTGATGTACATGATGATGTGATAGATGATCTGAGGAAACATATAAGCAGAGGAGAATTAACTGTAAATCAGCCAGCATTTGAAGGAGGACAAGTTGCAATTAAACACAATGATATAATCTCTAACGAAGATGTGTATGTTCCTATAACGATTGATGATGATGAAGGCTATGAGCAGCATTATGATGCGTTTGTTCTGTATGCTGATGAGGACAGGGAATTTGTCGAGGAAATGATTAATAGACTCGGAGGAATGTTTCAGATATGCACTAAAGAGAAGTTATTGCCTAGCCACTCTACAGAATATGCTCCTGTGGCTCAGCTGATCTCGCAGCGGTGCCAGTATATCATATTAGTCTACTCACCGGCCTTTCTGAGAAGTCCGGCCAATACTTTCTATCGGGATTATGCACAGGCTATTAGTATCGAATCAAGGAATCGCGTCTTCGAACACAAGTTGATACCTATAGTGTACCAACATTGTGAGTTACCAGTTCACCTCAAGTACTACACCAACTTAAAGTACACGACATCAGCCACTTTCAACTTCTGGGACAAACTCAAACAGTCACTGAGACAACACAGAATTGTTCCCAGGCTAGACGGTGCCACGTCCAGTCGCTCCGCATTAAACATAGTCGAGTTGACCAACTCAAACAACTTGGCCAACTCACACAACTTGGCCACCGAGTTCAGATCGGAGAGCCACTTCTTTCGAACCCCCGACCACAGCATCGTCCCAAACGGTCACGACTCGAACTCGGCCAGGAGCGAAGATACCTTGTCCTGGAGTGGCGACTACAGCCAGGCCAGCGACGGCGTCGAAAGGATGAAGAATCTGGGCAGAAGATTTATGAAAGTTCTCAAAAGGAAAAAAACCTAA

Protein

MQLKMASDSDINNLPLLMIPYKTRQMLSCLLNTKKIIPSDGPDKLPRDWRGLASLVGISSQEAGSIHQCSNKTDKVLEIWQRNGSPTVGQLLEFLQRLDRFDVHDDVIDDLRKHISRGELTVNQPAFEGGQVAIKHNDIISNEDVYVPITIDDDEGYEQHYDAFVLYADEDREFVEEMINRLGGMFQICTKEKLLPSHSTEYAPVAQLISQRCQYIILVYSPAFLRSPANTFYRDYAQAISIESRNRVFEHKLIPIVYQHCELPVHLKYYTNLKYTTSATFNFWDKLKQSLRQHRIVPRLDGATSSRSALNIVELTNSNNLANSHNLATEFRSESHFFRTPDHSIVPNGHDSNSARSEDTLSWSGDYSQASDGVERMKNLGRRFMKVLKRKKT

Similarity

Belongs to the histone H3 family.

Uniprot

H9J034   W5VGA1   A0A3G2LU62   A0A0N1I6H3   A0A194Q3S9   A0A212FNS6   + More
A0A1B6DXX9   A0A0K8TL98   E2AUC0   K7INK1   A0A0K8TGE4   A0A0A9XHW8   A0A1L8DAQ0   A0A088AIZ6   A0A232F3H4   A0A0J7L1T8   A0A2A3EJC7   A0A1W4W2K7   E9J1L9   A0A226E8E0   Q0IEX0   E0VZM0   A0A310S796   A0A182RII9   E2BNP8   A0A182X8I0   A0A151K0M1   A0A0L7RJK4   A0A182T8C6   A0A195DYX2   A0A023ES99   A0A182LWB1   A0A195CNF4   A0A182IZK0   A0A182WMG8   A0A182YBZ3   A0A182UEJ8   V5G294   A0A182KNI7   A0A151WS84   Q7Q9F4   A0A154PK88   A0A182HNT2   A0A182QGG1   A0A182VE85   A0A195ATD6   A0A1D2N2Y0   A0A158P3V3   F4WKX0   A0A182N9M8   A0A1Y1L8A3   A0A1B6ETT7   A0A023EZI7   A0A3L8DRV1   A0A2J7PGN0   A0A2J7PGM3   A0A2M3ZIM9   A0A1J1IXB1   A0A182PFZ4   U4UGA7   A0A0M8ZPW1   N6U2B1   A0A2M4AMD7   A0A2M4BNA1   A0A2M4AMH2   A0A069DSQ5   A0A084VUF3   A0A1Q3F786   A0A1Q3F6C9   A0A0V0GE88   A0A2M4BMW2   A0A2M4BMV9   W5J367   A0A0P5V1C6   A0A182FCT7   A0A0P5VAB1   A0A0P6A3R2   A0A1B6LXK5   A0A0P5V8K6   A0A0P5YGX5   A0A224XDY6   D6WEI3   A0A0P5XLL6   A0A0P5DWH4   A0A0P6CPB6   E9FWB5   A0A1A9UXI7   K9MBG9   T1J4H3   T1PCJ9   A0A1I8MKL8   B0XG49   B0WNK2   A0A1A9Z7N6   A0A1B0FPG1   J7FX75  

Pubmed

19121390    26354079    22118469    26369729    20798317    20075255    + More
25401762    26823975    28648823    21282665    17510324    20566863    24945155    25244985    20966253    12364791    14747013    17210077    27289101    21347285    21719571    28004739    25474469    30249741    23537049    26334808    24438588    20920257    23761445    18362917    19820115    21292972    23238389    25315136    23071706   

EMBL

BABH01018873    KF670143    AHH80650.1    MG837005    AYN77137.1    KQ461186    + More
KPJ07375.1    KQ459472    KPJ00192.1    AGBW02004392    OWR55406.1    GEDC01006783    JAS30515.1    GDAI01002509    JAI15094.1    GL442815    EFN62977.1    GBRD01001272    JAG64549.1    GBHO01025196    GDHC01020522    JAG18408.1    JAP98106.1    GFDF01010637    JAV03447.1    NNAY01001103    OXU25132.1    LBMM01001256    KMQ96636.1    KZ288226    PBC31903.1    GL767674    EFZ13196.1    LNIX01000006    OXA52936.1    CH477464    EAT40501.1    DS235853    EEB18826.1    KQ766110    OAD53744.1    GL449438    EFN82696.1    KQ981292    KYN43129.1    KQ414582    KOC70906.1    KQ980044    KYN18068.1    GAPW01001468    JAC12130.1    AXCM01008065    KQ977513    KYN02200.1    GALX01004336    JAB64130.1    KQ982783    KYQ50704.1    AAAB01008900    EAA09478.4    KQ434936    KZC11874.1    APCN01002763    AXCN02001012    KQ976746    KYM75322.1    LJIJ01000266    ODM99636.1    ADTU01008564    GL888206    EGI65212.1    GEZM01063669    JAV69028.1    GECZ01028397    JAS41372.1    GBBI01004054    JAC14658.1    QOIP01000005    RLU23134.1    NEVH01025175    PNF15480.1    PNF15479.1    GGFM01007549    MBW28300.1    CVRI01000059    CRL03806.1    KB632342    ERL93009.1    KQ435922    KOX68497.1    APGK01042550    APGK01042551    APGK01042552    KB741006    ENN75680.1    GGFK01008632    MBW41953.1    GGFJ01005280    MBW54421.1    GGFK01008674    MBW41995.1    GBGD01001761    JAC87128.1    ATLV01016739    ATLV01016740    KE525103    KFB41597.1    GFDL01011619    JAV23426.1    GFDL01012017    JAV23028.1    GECL01000477    JAP05647.1    GGFJ01005279    MBW54420.1    GGFJ01005278    MBW54419.1    ADMH02002213    ETN57768.1    GDIP01106090    JAL97624.1    GDIP01103184    JAM00531.1    GDIP01047707    LRGB01001361    JAM56008.1    KZS12554.1    GEBQ01028345    GEBQ01011566    JAT11632.1    JAT28411.1    GDIP01103237    JAM00478.1    GDIP01071753    JAM31962.1    GFTR01005761    JAW10665.1    KQ971318    EFA01304.1    GDIP01070305    JAM33410.1    GDIP01150591    JAJ72811.1    GDIQ01090110    JAN04627.1    GL732526    EFX88460.1    JX501341    AFU61120.1    JH431845    KA645870    AFP60499.1    DS232989    EDS27224.1    DS232012    EDS31829.1    CCAG010008035    JX073566    AFP49300.1   

Proteomes

UP000005204    UP000053240    UP000053268    UP000007151    UP000000311    UP000002358    + More
UP000005203    UP000215335    UP000036403    UP000242457    UP000192223    UP000198287    UP000008820    UP000009046    UP000075900    UP000008237    UP000076407    UP000078541    UP000053825    UP000075901    UP000078492    UP000075883    UP000078542    UP000075880    UP000075920    UP000076408    UP000075902    UP000075882    UP000075809    UP000007062    UP000076502    UP000075840    UP000075886    UP000075903    UP000078540    UP000094527    UP000005205    UP000007755    UP000075884    UP000279307    UP000235965    UP000183832    UP000075885    UP000030742    UP000053105    UP000019118    UP000030765    UP000000673    UP000069272    UP000076858    UP000007266    UP000000305    UP000078200    UP000095301    UP000002320    UP000092445    UP000092444   

PRIDE

H9J034   

Pfam

PF00531   Death        + More
PF01582   TIR
PF13676   TIR_2
PF00125   Histone

Interpro

IPR011029   DEATH-like_dom_sf        + More
IPR017281   Myelin_different_resp_MyD88       
IPR000157   TIR_dom       
IPR035897   Toll_tir_struct_dom_sf       
IPR000488   Death_domain       
IPR000164   Histone_H3/CENP-A       
IPR009072   Histone-fold       
IPR007125   Histone_H2A/H2B/H3       
IPR034249   MyD88_Death       

SUPFAM

SSF47986   SSF47986        + More
SSF52200   SSF52200       
SSF47113   SSF47113       

Gene 3D

3.40.50.10140     1.10.20.10    

CDD

cd08312  Death_MyD88

ProteinModelPortal

H9J034   W5VGA1   A0A3G2LU62   A0A0N1I6H3   A0A194Q3S9   A0A212FNS6   + More
A0A1B6DXX9   A0A0K8TL98   E2AUC0   K7INK1   A0A0K8TGE4   A0A0A9XHW8   A0A1L8DAQ0   A0A088AIZ6   A0A232F3H4   A0A0J7L1T8   A0A2A3EJC7   A0A1W4W2K7   E9J1L9   A0A226E8E0   Q0IEX0   E0VZM0   A0A310S796   A0A182RII9   E2BNP8   A0A182X8I0   A0A151K0M1   A0A0L7RJK4   A0A182T8C6   A0A195DYX2   A0A023ES99   A0A182LWB1   A0A195CNF4   A0A182IZK0   A0A182WMG8   A0A182YBZ3   A0A182UEJ8   V5G294   A0A182KNI7   A0A151WS84   Q7Q9F4   A0A154PK88   A0A182HNT2   A0A182QGG1   A0A182VE85   A0A195ATD6   A0A1D2N2Y0   A0A158P3V3   F4WKX0   A0A182N9M8   A0A1Y1L8A3   A0A1B6ETT7   A0A023EZI7   A0A3L8DRV1   A0A2J7PGN0   A0A2J7PGM3   A0A2M3ZIM9   A0A1J1IXB1   A0A182PFZ4   U4UGA7   A0A0M8ZPW1   N6U2B1   A0A2M4AMD7   A0A2M4BNA1   A0A2M4AMH2   A0A069DSQ5   A0A084VUF3   A0A1Q3F786   A0A1Q3F6C9   A0A0V0GE88   A0A2M4BMW2   A0A2M4BMV9   W5J367   A0A0P5V1C6   A0A182FCT7   A0A0P5VAB1   A0A0P6A3R2   A0A1B6LXK5   A0A0P5V8K6   A0A0P5YGX5   A0A224XDY6   D6WEI3   A0A0P5XLL6   A0A0P5DWH4   A0A0P6CPB6   E9FWB5   A0A1A9UXI7   K9MBG9   T1J4H3   T1PCJ9   A0A1I8MKL8   B0XG49   B0WNK2   A0A1A9Z7N6   A0A1B0FPG1   J7FX75  

PDB

2JS7     E-value=1.48044e-10,     Score=159

KEGG

101735950    K04729 myeloid differentiation primary response protein MyD88 | (RefSeq) myeloid differentiation pri

PATHWAY

04624    Toll and Imd signaling pathway - Bombyx mori (domestic silkworm)

GO

GO:0002755   GO:0070976   GO:0043123   GO:0003677   GO:0000786   GO:0005634   GO:0046982   GO:0007165   GO:0045087   GO:0008063   GO:0035325   GO:0050830   GO:0005886   GO:0016021   GO:0005515   GO:0006139   GO:0008026   GO:0016818   GO:0004003   GO:0000723   GO:0006260  

PANTHER

PTHR15079  

Subcellular location

Chromosome  
Nucleus  

Length:

393

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00680999999999999

Exp number, first 60 AAs:

0.00036

Total prob of N-in:

0.03473

outside

1  -  393

 

 

Pi

18.35523

Theta

18.143149

Tajima's D

0.098896

CLR

1.39879

CSRT

0.39938003099845

Interpretation

Uncertain