Gene

KWMTBOMO06026  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA002829

Annotation

39S_ribosomal_protein_L21?_mitochondrial_[Operophtera_brumata]

Location

Bomo_Chr10(+):16742742-16743448      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.191

CDS

ATGGCACTTCTGCGATCGGGACTGCAAAGGGTCGCTAATATATTTGGTGGAACACAAGGTGGTATTTTATCGAGATTCGTAACAAGTTTAGTCCCATCTGAAAACAAATCTGTAGCAGAAACATCGAAGGAGGTCATCGCTACATGTAATAAATTGATCGAACAAAATGCTTCAAGAAATTTTGCAATTGTCCACATACTTGGTAAACAGTGGCGCGTGACTGATGGTGATCTCCTTGTCGTCGAAGGCTACTGGCCACCAAACATCGGTGATCAAATAACATTGGATAAAGTACTTGTTGCTGCCACTAAAGACTTCTCGCTTATTGGCCGCCCATTGGTCCAACCTGGATTAGTAACGGTTACCGCTACAATAATTTCTAAGGGATTATCCCACACTAGAACCCATTTCAAAAAGAAGAGAAGGAAGCAATTTATGAGAATAAATTTTCAAAGAGCACAACAAACAATATTAAGAATAAACTCAGTGGAAATAGGAAACAAAATCAATGAGGGAAGAAATGATGTTTGA

Protein

MALLRSGLQRVANIFGGTQGGILSRFVTSLVPSENKSVAETSKEVIATCNKLIEQNASRNFAIVHILGKQWRVTDGDLLVVEGYWPPNIGDQITLDKVLVAATKDFSLIGRPLVQPGLVTVTATIISKGLSHTRTHFKKKRRKQFMRINFQRAQQTILRINSVEIGNKINEGRNDV

Uniprot

H9IZZ4   A0A0L7L370   A0A2H1WP56   A0A3S2LT68   A0A194Q4B3   A0A0N1PFI8   + More
A0A212FNV9   A0A0J9RXV4   A0A182MAX4   B4IG05   A0A1S4F453   Q17G93   A0A182RSR4   Q9VVX4   B4PGY5   B4ITM4   B3NDY3   A0A3B0J9F0   B4LDL1   A0A1W4UPF8   A0A0L0BKP2   B3M7N1   A0A182YCE7   V5IB44   B4KYW4   A0A084VIJ1   A0A0M4F0Y3   A0A182QXW1   A0A182IRL9   B4H952   Q29DI1   W8C026   B4N4Q1   A0A182NPS8   A0A182UEE1   A0A2M4D0Z9   A0A182PLX8   A0A1I8MYR3   A0A182JVA5   A0A182V7I2   A0A182KTG7   A0A182X7U6   Q5TMZ0   A0A182HHW6   A0A182FT90   A0A1L8EDV7   B0X8C8   A0A2M4CZH1   B0XJY5   A0A2M4AU60   A0A2M3ZJ80   A0A1Q3FB87   B4J3D6   A0A336L989   A0A1L8EBA8   A0A1Q3FCK3   A0A1A9V5Z3   A0A2M4C0S2   A0A2M4BZT5   A0A182WCX8   A0A336LT74   A0A1L8DS34   T1GHT3   A0A182G454   A0A1A9ZEA4   A0A1I8Q689   A0A1L8DSB0   A0A2H8TH00   C4WSI9   D2A293   A0A1B0FEQ9   A0A0V0GCP6   A0A0P4VHY0   U5EPG7   E9IWS2   T1I3K3   A0A067RS94   J3JXK1   A0A1J1ILC0   A0A026WTX2   K7J4J0   A0A2P8XH46   A0A1Y1MJX5   A0A0A9Y5S9   A0A232ENE7   R4WDG4   A0A146LUE0   A0A1B6D731   A0A195C370   E2BNE8   A0A162QW62  

Pubmed

19121390    26227816    26354079    22118469    22936249    17994087    + More
17510324    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    18057021    26108605    25244985    24438588    15632085    24495485    25315136    20966253    12364791    14747013    17210077    26483478    18362917    19820115    27129103    21282665    24845553    22516182    23537049    24508170    30249741    20075255    29403074    28004739    25401762    28648823    23691247    26823975    20798317   

EMBL

BABH01018874    JTDY01003232    KOB69912.1    ODYU01010033    SOQ54850.1    RSAL01000262    + More
RVE43313.1    KQ459472    KPJ00189.1    KQ461186    KPJ07378.1    AGBW02004392    OWR55403.1    CM002912    KMZ00504.1    AXCM01006936    CH480834    EDW46592.1    CH477264    EAT45613.1    AE014296    BT128761    AAF49183.2    AEK82612.1    AGB94732.1    AHN58137.1    CM000159    EDW95355.1    CH891721    EDW99737.1    CH954178    EDV52337.1    OUUW01000002    SPP76562.1    CH940647    EDW69972.1    KRF84659.1    JRES01001711    KNC20622.1    CH902618    EDV40959.1    GALX01000080    JAB68386.1    CH933809    EDW18856.1    ATLV01013363    KE524854    KFB37785.1    CP012525    ALC44470.1    AXCN02001669    CH479227    EDW35276.1    CH379070    EAL30433.1    GAMC01001563    JAC04993.1    CH964095    EDW79125.1    GGFL01006590    MBW70768.1    AAAB01008986    EAL38786.1    EDO63331.1    EDO63332.1    APCN01002448    GFDG01001911    JAV16888.1    DS232483    EDS42464.1    GGFL01006554    MBW70732.1    DS233649    EDS30930.1    GGFK01010999    MBW44320.1    GGFM01007747    MBW28498.1    GFDL01010201    JAV24844.1    CH916366    EDV97235.1    UFQS01002042    UFQT01002042    SSX13055.1    SSX32495.1    GFDG01002778    JAV16021.1    GFDL01009827    JAV25218.1    GGFJ01009447    MBW58588.1    GGFJ01009448    MBW58589.1    UFQS01000184    UFQT01000184    SSX00852.1    SSX21232.1    GFDF01004835    JAV09249.1    CAQQ02163523    JXUM01143102    KQ569533    KXJ68599.1    GFDF01004820    JAV09264.1    GFXV01001570    MBW13375.1    ABLF02009934    ABLF02011999    AK340208    BAH70859.1    KQ971338    EFA02054.1    CCAG010005922    GECL01000282    JAP05842.1    GDKW01003257    JAI53338.1    GANO01003723    JAB56148.1    GL766597    EFZ15009.1    ACPB03025911    KK852498    KDR22679.1    BT127970    KB632179    AEE62932.1    ERL89604.1    CVRI01000054    CRL00356.1    KK107119    QOIP01000009    EZA58554.1    RLU18640.1    AAZX01009232    PYGN01002149    PSN31327.1    GEZM01034880    GEZM01034874    GEZM01034873    JAV83577.1    GBHO01016618    GBRD01004238    JAG26986.1    JAG61583.1    NNAY01003159    OXU19893.1    AK417668    BAN20883.1    GDHC01007288    JAQ11341.1    GEDC01015806    JAS21492.1    KQ978350    KYM94646.1    GL449414    EFN82727.1    LRGB01000248    KZS20004.1   

Proteomes

UP000005204    UP000037510    UP000283053    UP000053268    UP000053240    UP000007151    + More
UP000075883    UP000001292    UP000008820    UP000075900    UP000000803    UP000002282    UP000008711    UP000268350    UP000008792    UP000192221    UP000037069    UP000007801    UP000076408    UP000009192    UP000030765    UP000092553    UP000075886    UP000075880    UP000008744    UP000001819    UP000007798    UP000075884    UP000075902    UP000075885    UP000095301    UP000075881    UP000075903    UP000075882    UP000076407    UP000007062    UP000075840    UP000069272    UP000002320    UP000001070    UP000078200    UP000075920    UP000015102    UP000069940    UP000249989    UP000092445    UP000095300    UP000007819    UP000007266    UP000092444    UP000015103    UP000027135    UP000030742    UP000183832    UP000053097    UP000279307    UP000002358    UP000245037    UP000215335    UP000078542    UP000008237    UP000076858   

PRIDE

H9IZZ4    Q9VVX4   

Pfam

PF00829   Ribosomal_L21p        + More
PF00400   WD40

Interpro

IPR036164   L21-like_sf        + More
IPR028909   L21p-like       
IPR001787   Ribosomal_L21       
IPR036322   WD40_repeat_dom_sf       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR001680   WD40_repeat       
IPR017986   WD40_repeat_dom       

SUPFAM

SSF141091   SSF141091        + More
SSF50978   SSF50978       

Gene 3D

2.130.10.10    

ProteinModelPortal

H9IZZ4   A0A0L7L370   A0A2H1WP56   A0A3S2LT68   A0A194Q4B3   A0A0N1PFI8   + More
A0A212FNV9   A0A0J9RXV4   A0A182MAX4   B4IG05   A0A1S4F453   Q17G93   A0A182RSR4   Q9VVX4   B4PGY5   B4ITM4   B3NDY3   A0A3B0J9F0   B4LDL1   A0A1W4UPF8   A0A0L0BKP2   B3M7N1   A0A182YCE7   V5IB44   B4KYW4   A0A084VIJ1   A0A0M4F0Y3   A0A182QXW1   A0A182IRL9   B4H952   Q29DI1   W8C026   B4N4Q1   A0A182NPS8   A0A182UEE1   A0A2M4D0Z9   A0A182PLX8   A0A1I8MYR3   A0A182JVA5   A0A182V7I2   A0A182KTG7   A0A182X7U6   Q5TMZ0   A0A182HHW6   A0A182FT90   A0A1L8EDV7   B0X8C8   A0A2M4CZH1   B0XJY5   A0A2M4AU60   A0A2M3ZJ80   A0A1Q3FB87   B4J3D6   A0A336L989   A0A1L8EBA8   A0A1Q3FCK3   A0A1A9V5Z3   A0A2M4C0S2   A0A2M4BZT5   A0A182WCX8   A0A336LT74   A0A1L8DS34   T1GHT3   A0A182G454   A0A1A9ZEA4   A0A1I8Q689   A0A1L8DSB0   A0A2H8TH00   C4WSI9   D2A293   A0A1B0FEQ9   A0A0V0GCP6   A0A0P4VHY0   U5EPG7   E9IWS2   T1I3K3   A0A067RS94   J3JXK1   A0A1J1ILC0   A0A026WTX2   K7J4J0   A0A2P8XH46   A0A1Y1MJX5   A0A0A9Y5S9   A0A232ENE7   R4WDG4   A0A146LUE0   A0A1B6D731   A0A195C370   E2BNE8   A0A162QW62  

PDB

6GB2     E-value=1.51848e-16,     Score=206

KEGG

101736166    K02888 large subunit ribosomal protein L21 | (RefSeq) 39S ribosomal protein L21, mitochondrial

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0005840   GO:0006412   GO:0003735   GO:0003723   GO:0032543   GO:0005762   GO:0006508   GO:0008237   GO:0007186   GO:0016021   GO:0016567   GO:0007264   GO:0008026   GO:0016597  

PANTHER

PTHR21349  

Length:

176

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.75875

Exp number, first 60 AAs:

0.03729

Total prob of N-in:

0.06250

outside

1  -  176

 

 

Pi

18.540132

Theta

18.517143

Tajima's D

0.047529

CLR

0

CSRT

0.390730463476826

Interpretation

Uncertain