Gene

KWMTBOMO06011  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA002823

Annotation

PREDICTED:_rab5_GDP/GTP_exchange_factor_[Bombyx_mori]

Location

Bomo_Chr10(+):16068682-16082629      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.726

CDS

ATGCCTTCACTACGGATCGACCAAAACGACTTGAAGTGCAAGAATGGATGTGATTATTTTGGCAACCCACAATGGCAGGGGTACTGCTCGAAATGTCACAGGGAACAGATGCAGAGGCAAAGAAAAGCAGAGAAAGCCTCATCGTTTACATCGACTCTTCCTAGATCGGACCAGAGGAAGTCCGAACGCGGCCTCAAGTTGTCCTCGCACGCGTCCTTCTCGAAGTTCGAAGAGAAGCGCCTGCGACAAAGCGAAACGCTCAAGAAGACTAATCTACTGAAGTTTAACGTGTTCAAGAAGAATATTACAGATGACCATGAAATCTCAACGGAAAGACGTCAGCCAGAGTTTAAGATTCCGACCGCAGTGTTCGAAGGTATGAAGGCAGACTTCCGGGTCCGCTTTCCCTCGTTTCCCCCCCAGATAGACCGGGACGCTAGGGGCTTCGTTCACACCTTCATCCTGGATGTCATAAAATGGGCTGCTATAATGAATGTGGACGAGCTCTCGGAGAGGGTGCAGAAGCAGTACCAGCGCTTCATGAAGCACATGGAAACGTCGCAGCACTACGCATCTGTAGACTCGGACGCCAGAGAGCTGCTCATAGATTTCGTCGAGAAACACGCCATGACCTACTTACATGAGTTGCCGTCTATAGTGTTTTCGCCGAGTGGAACCGATGACGAACGCCAGGACCGCGCCATGTCGGAGCGGATACAGCAACTGAGCTGGGTGGGGGAAAAGCACCTCGAATGTAAACTGGACAGGAACAATGCTGAATGCCGACGGTTGCTCTACAAGGCTATAAGCGAGCTGCTGGGTATGGACGCGGCGCGCTGGTCGGGCGCCAAGCTGGCCCGCGTGCGGCGCTGCGCCCGCCACGTGCTGCGGCTGGCCGCGCCCGCGCCCGCCTCCGCCGACGACCTGCTGCCCGCGCTCATACTCGCCGTCCTGAAAGCCAACCCGCCACGTTTGATAAGCAACATTAATTACGTGACCCGCTTCTGCAACGCCCAGAGGCTGATGACCGGCGAGGGTGGCTACTACTTTACTAACTTGTGCTGTGCGGTGTCGTTCATCCAGAATATGACGGCGGAGTCTCTGAGCATGGACAAGAAGGAGTTCGACTGCTACATGGCGATGCCGGCCTCCATAGGCGGGAGTGCCTGGGCGGCCGCGCTGTCGCTGTGCGGCGCCACACGCGAGGCCGAGGAACAGAGCGCTCTAGCAGCGAAACTTCTAGAACAGACCAAAGAGATACAGAGGGAGGCCGAGAACATGGCGAACAACGCGGCTACATTTGAGGAACAAATCGCGAAGAAAGTTCAAGACGTTTTAGCAAAGACCCCACTGGAGATCAAACCACGGCGAGAACTGCCGCGTCTCAGACGCGAGGGCGTCGGGTCCGCGCCGCCGCCCACCACCGAGCCCGGCCCGGCGCGGACCTCAGAACCGCCAGCGCTGCTCAACGAGCCGAGCGTAGTCATCGACGAAACCGAAAAACTAAACATCTTAGGCTTCGAAGTGGTCGAGGAGCGGTCGCCGTCCAAGTCGCCGCAGCTGGACCGCCTCTCCGACCTCAAACAGAGCAGTTCAACGGAACTACTGACCCCATCCCCGATGGTCCTCACTCCGTTCGACTGCAGGTCCCTAGACGAGGTGCTGACCCCGGACGAGTTCCCGGACAACATCCCCGGACTGAGCGACGTCAATTATGACATAGACCTGTCAGATTTCAGCGCGGATACCAGTCTGGCGGAGGACCCCCCCGCCCCCGACCGCCGAAGGACCTTCGATCCATTCGCGCCTCAGACCTCAAAAGACTCGTACAAGTTGCTGGAGTCCTTTGATGAATTTAGCATCGTGGATAACGCGCGCGAGTCGGACCCCTACGAGGTCGTGCACAGGCCGGACCCGTTTGGTTCTGTTTTGGACAACGATGAGGGTAGAGCGTCCATTCTGGACGACAGCGGTTCCCCCACGGCCGCCTGCCTGCTGCCCTCACCGATACAGCCTCAAAACAGCGCGAAGCCAACTTAG

Protein

MPSLRIDQNDLKCKNGCDYFGNPQWQGYCSKCHREQMQRQRKAEKASSFTSTLPRSDQRKSERGLKLSSHASFSKFEEKRLRQSETLKKTNLLKFNVFKKNITDDHEISTERRQPEFKIPTAVFEGMKADFRVRFPSFPPQIDRDARGFVHTFILDVIKWAAIMNVDELSERVQKQYQRFMKHMETSQHYASVDSDARELLIDFVEKHAMTYLHELPSIVFSPSGTDDERQDRAMSERIQQLSWVGEKHLECKLDRNNAECRRLLYKAISELLGMDAARWSGAKLARVRRCARHVLRLAAPAPASADDLLPALILAVLKANPPRLISNINYVTRFCNAQRLMTGEGGYYFTNLCCAVSFIQNMTAESLSMDKKEFDCYMAMPASIGGSAWAAALSLCGATREAEEQSALAAKLLEQTKEIQREAENMANNAATFEEQIAKKVQDVLAKTPLEIKPRRELPRLRREGVGSAPPPTTEPGPARTSEPPALLNEPSVVIDETEKLNILGFEVVEERSPSKSPQLDRLSDLKQSSSTELLTPSPMVLTPFDCRSLDEVLTPDEFPDNIPGLSDVNYDIDLSDFSADTSLAEDPPAPDRRRTFDPFAPQTSKDSYKLLESFDEFSIVDNARESDPYEVVHRPDPFGSVLDNDEGRASILDDSGSPTAACLLPSPIQPQNSAKPT

Uniprot

H9IZY8   A0A2A4JI99   A0A194Q4A5   A0A0N1I6I1   A0A212ENU2   A0A0L7KCU0   + More
A0A2J7PF72   A0A067RCD9   A0A1B6CM49   A0A1B6D297   V5GX42   A0A1Y1N3Y8   A0A0T6AU62   B0WNL8   A0A1Q3F7B1   N6UF97   A0A1Q3F7W5   A0A1Q3F5L0   A0A1Q3F757   U5EY36   B4L0N2   A0A1B6HC12   A0A0K8VH28   A0A0M5J0K7   A0A034W2E6   B4LG79   B4J2E7   A0A0A1XFM6   B4MXZ5   A0A1A9W4K5   A0A2J7PF74   Q9W0H9   A0A336K2I2   W8BK82   A0A336MKV9  

Pubmed

19121390    26354079    22118469    26227816    24845553    28004739    + More
23537049    17994087    25348373    25830018    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    24495485   

EMBL

BABH01018930    BABH01018931    NWSH01001468    PCG71153.1    KQ459472    KPJ00179.1    + More
KQ461186    KPJ07388.1    AGBW02013618    OWR43127.1    JTDY01010155    KOB60674.1    NEVH01026085    PNF14986.1    KK852556    KDR21427.1    GEDC01022772    JAS14526.1    GEDC01017613    JAS19685.1    GALX01002129    JAB66337.1    GEZM01013431    GEZM01013426    GEZM01013425    JAV92559.1    LJIG01022843    KRT78427.1    DS232013    EDS31854.1    GFDL01011652    JAV23393.1    APGK01024356    KB740544    KB632130    ENN80415.1    ERL88966.1    GFDL01011442    JAV23603.1    GFDL01012287    JAV22758.1    GFDL01011686    JAV23359.1    GANO01000556    JAB59315.1    CH933809    EDW18109.1    GECU01035498    JAS72208.1    GDHF01014474    JAI37840.1    CP012525    ALC42948.1    GAKP01010088    JAC48864.1    CH940647    EDW69387.1    CH916366    EDV96006.1    GBXI01004078    JAD10214.1    CH963876    EDW76984.2    PNF14981.1    AE014296    AY058763    AAF47467.1    AAL13992.1    UFQS01000091    UFQT01000091    SSW99184.1    SSX19566.1    GAMC01009122    JAB97433.1    UFQS01000704    UFQT01000704    SSX06314.1    SSX26668.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000007151    UP000037510    + More
UP000235965    UP000027135    UP000002320    UP000019118    UP000030742    UP000009192    UP000092553    UP000008792    UP000001070    UP000007798    UP000091820    UP000000803   

PRIDE

H9IZY8    Q9W0H9   

Pfam

PF01754   zf-A20        + More
PF02204   VPS9
PF18151   DUF5601

Interpro

IPR037191   VPS9_dom_sf        + More
IPR041545   DUF5601       
IPR003123   VPS9       
IPR002653   Znf_A20       

SUPFAM

SSF109993   SSF109993       

Gene 3D

1.20.1050.80    

ProteinModelPortal

H9IZY8   A0A2A4JI99   A0A194Q4A5   A0A0N1I6I1   A0A212ENU2   A0A0L7KCU0   + More
A0A2J7PF72   A0A067RCD9   A0A1B6CM49   A0A1B6D297   V5GX42   A0A1Y1N3Y8   A0A0T6AU62   B0WNL8   A0A1Q3F7B1   N6UF97   A0A1Q3F7W5   A0A1Q3F5L0   A0A1Q3F757   U5EY36   B4L0N2   A0A1B6HC12   A0A0K8VH28   A0A0M5J0K7   A0A034W2E6   B4LG79   B4J2E7   A0A0A1XFM6   B4MXZ5   A0A1A9W4K5   A0A2J7PF74   Q9W0H9   A0A336K2I2   W8BK82   A0A336MKV9  

PDB

4Q9U     E-value=1.84511e-37,     Score=393

KEGG

101736427    K20131 Rab5 GDP/GTP exchange factor | (RefSeq) rab5 GDP/GTP exchange factor

GO

GO:0003677   GO:0008270   GO:0031398   GO:0032483   GO:0051036   GO:0045177   GO:0040015   GO:0017112   GO:0007474   GO:0030139   GO:0035214   GO:0004190   GO:0006508   GO:0005525   GO:0005509   GO:0005622   GO:0007264   GO:0008026   GO:0016597  

Length:

679

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.08877

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00241

outside

1  -  679

 

 

Pi

29.008098

Theta

27.433235

Tajima's D

0.054321

CLR

12.763411

CSRT

0.386480675966202

Interpretation

Uncertain