Gene

KWMTBOMO06002  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA002882

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_2-oxoglutarate_dehydrogenase?_mitochondrial-like_[Bombyx_mori]

Location

Bomo_Chr10(-):15993877-15997821      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 1.555 Nuclear   Reliability : 1.483

CDS

ATGTCTTTAACTCGTTTTTCGTGTGTTATAAGAGCCACGCAAAAGTTACAAGTTTATCAGTGGGCATGGTCGTGCAAACACAAAGCCGATTACTCATCGCGTGCGGAATCGTTTTTAACTGGTTCGAATGTTAATTATCTAGAAGCTCAGTACCTGGATTGGGCCAAAACTAAAGGATCAATTGATTCGTCTTGGGACAATTTCTACGACAGCCTATCTGGGCCAGCGTTGCAAATAGAAGACATTCAAGATGAATTTAGTCCAACAACTGTCAAGCCAAAATCGAAACAAGATACCTCTAAAGACAAAGAAGCAATTACTGAGAAAATCAAATTACACTTAGCTGTACAGAATCTCATAAGAAGTTATCAGGCCAGAGGTCACCTCCTCGCCAAGACTGATCCTTTGGGCCTATCTCTAGCCGCTAGTTATATCATGAAGTCCAAGAACGCCACATTGGAAACCAAAGGACTTGAGTGTCGCATTGTATCTCGTGAGATTGGTAGAGTATTGTGTTAG

Protein

MSLTRFSCVIRATQKLQVYQWAWSCKHKADYSSRAESFLTGSNVNYLEAQYLDWAKTKGSIDSSWDNFYDSLSGPALQIEDIQDEFSPTTVKPKSKQDTSKDKEAITEKIKLHLAVQNLIRSYQARGHLLAKTDPLGLSLAASYIMKSKNATLETKGLECRIVSREIGRVLC

Uniprot

H9J047   A0A212F1D6   A0A2A4JNT4   A0A2H1WNX1   A0A194Q3R0   A0A2A4J4I8   + More
A0A194QSN8   G8XYZ2   G8Y521   U3JW96   A0A212ER64   E2AHW4   F6YH08   E0VM86   E0W368   A0A0L7LPL5   A0A094KGD4   A0A088AHH8   A0A068XXW5   A0A3Q1GYY8   A0A3Q1I7U1   A0A3Q1H751   G0V9W9   A0A2A3EBQ8   A0A2H8TUK5   A0A060SXT5   A0A091ECL0   U6J6T4   A0A224XH74   J9K7C2   G3ARR8   A0A0X3QC74   A0A0X3PLL1   I2H4X9   C5DP90   A0A1Q2ZT34   C4YPM4   A0A1D8PJ26   V9IK01   B9WD61  

Pubmed

19121390    22118469    26354079    20798317    18464734    20566863    + More
26227816    23485966    22123960    24013640    21788494    19525356    19465905    15123810    17419877    24025428    19745113   

EMBL

BABH01018946    AGBW02010898    OWR47555.1    NWSH01000943    PCG73436.1    ODYU01009993    + More
SOQ54773.1    KQ459472    KPJ00172.1    NWSH01003119    PCG66911.1    KQ461175    KPJ08000.1    FO082046    CCE86901.1    FO082047    CCE85789.1    AGTO01010261    AGBW02013113    OWR43959.1    GL439602    EFN66954.1    AAPN01421023    AAPN01421024    DS235297    EEB14492.1    DS235882    EEB20073.1    JTDY01000397    KOB77372.1    KL347107    KFZ56491.1    LN902843    CDS37066.1    HE576753    CCC68736.1    KZ288310    PBC28616.1    GFXV01005053    MBW16858.1    HG937691    CDP33548.1    KN122106    KFO33056.1    LK028579    APAU02000010    CDS19016.1    EUB62865.1    GFTR01008494    JAW07932.1    ABLF02016166    GL996503    EGW31335.1    GEEE01004783    JAP58442.1    GEEE01010462    JAP52763.1    HE806320    CCH61431.1    CU928173    CAR25501.1    BDGX01000001    GAV46473.1    CM000310    EEQ44163.1    CP017625    AOW28136.1    JR048976    AEY60821.1    FM992690    CAX42610.1   

Proteomes

UP000005204    UP000007151    UP000218220    UP000053268    UP000053240    UP000005222    + More
UP000016665    UP000000311    UP000002279    UP000009046    UP000037510    UP000005203    UP000017246    UP000265040    UP000001640    UP000242457    UP000028990    UP000019149    UP000007819    UP000000709    UP000002866    UP000008536    UP000187013    UP000001429    UP000000559    UP000002605   

PRIDE

H9J047   

Pfam

PF16078   2-oxogl_dehyd_N        + More
PF16870   OxoGdeHyase_C
PF02779   Transket_pyr
PF00676   E1_dh

Interpro

IPR032106   2-oxogl_dehyd_N        + More
IPR011603   2oxoglutarate_DH_E1       
IPR005475   Transketolase-like_Pyr-bd       
IPR001017   DH_E1       
IPR031717   KGD_C       
IPR042179   KGD_C_sf       
IPR029061   THDP-binding       

SUPFAM

SSF52518   SSF52518       

Gene 3D

3.40.50.11610    

ProteinModelPortal

H9J047   A0A212F1D6   A0A2A4JNT4   A0A2H1WNX1   A0A194Q3R0   A0A2A4J4I8   + More
A0A194QSN8   G8XYZ2   G8Y521   U3JW96   A0A212ER64   E2AHW4   F6YH08   E0VM86   E0W368   A0A0L7LPL5   A0A094KGD4   A0A088AHH8   A0A068XXW5   A0A3Q1GYY8   A0A3Q1I7U1   A0A3Q1H751   G0V9W9   A0A2A3EBQ8   A0A2H8TUK5   A0A060SXT5   A0A091ECL0   U6J6T4   A0A224XH74   J9K7C2   G3ARR8   A0A0X3QC74   A0A0X3PLL1   I2H4X9   C5DP90   A0A1Q2ZT34   C4YPM4   A0A1D8PJ26   V9IK01   B9WD61  

PDB

2JGD     E-value=3.89117e-06,     Score=116

KEGG

101737329    K00164 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] | (RefSeq) 2-oxoglutarate dehydrogenas

PATHWAY

00020    Citrate cycle (TCA cycle) - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)
01200    Carbon metabolism - Bombyx mori (domestic silkworm)

GO

GO:0030976   GO:0006099   GO:0004591   GO:0005739   GO:0045252   GO:0042645   GO:0009353  

PANTHER

PTHR23152  

Length:

172

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00663

Exp number, first 60 AAs:

0.00017

Total prob of N-in:

0.09196

outside

1  -  172

 

 

Pi

25.936466

Theta

27.105128

Tajima's D

-0.40786

CLR

1.400765

CSRT

0.267236638168092

Interpretation

Uncertain