Gene

KWMTBOMO06001

Pre Gene Modal

BGIBMGA002883

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_2-oxoglutarate_dehydrogenase?_mitochondrial-like_[Bombyx_mori]

Location

Bomo_Chr10(-):15985251-15986781      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.333

CDS

ATGCACGGAGACGCAGCGTTCTCTGGCCAGGGCGTTGTGTACGAGACAATGCATCTTGGAAACCTTCCGGCTTTTACCACACACGGTTCAATACACATTGTCTGCAACAACCAGATCGGGTACACGACGGATCCTAGGTTCGCGAGGAGCTCGCCTTACTGCTCTGACGTGGCGAAGTGTGTGGATGCTCCCGTGTTCCACGTGAACGCTGATGACGCGGAGGCCGTGGCGCACGTCGCGAGGGTCGCCATCGAGTACCGCTGCAAGTTCAAGAAGGACGTCGTGCTGGATCTGGTCTGCTATAGGCGCTTCGGGCACAGCGAAGAAGACGAGCCCATGTTCACTCAACCTTTCATGTACAAGAAAATTAAGAGCATGCAAACTGTTGATAAAATCTATGGCGAGAAACTGAAGGCAGAAGGTATAGTGACGGATGCCGATGTCAAGGGTTGGGAGAAAGAGTACATGGACACGCTAAATCGGCACTTTGAGCTCGCCAAGAAGGTCACCAAACTAAGCATTATGGATTGGATCGATACTCCATGGACTGGTTTCTTTGAGGCCAGAGATCCTAAGAAAGTAAGGTTTCAATAA

Protein

MHGDAAFSGQGVVYETMHLGNLPAFTTHGSIHIVCNNQIGYTTDPRFARSSPYCSDVAKCVDAPVFHVNADDAEAVAHVARVAIEYRCKFKKDVVLDLVCYRRFGHSEEDEPMFTQPFMYKKIKSMQTVDKIYGEKLKAEGIVTDADVKGWEKEYMDTLNRHFELAKKVTKLSIMDWIDTPWTGFFEARDPKKVRFQ

Uniprot

A0A212F1D6   A0A194QSN8   A0A194Q3R0   A0A2A4J669   A0A2A4JMC2   A0A2A4JNT4   + More
A0A2H1WNX1   A0A0K8TMF4   A0A0T6BHJ8   A0A0A1X7U1   A0A1Y1LYV4   A0A1Y1LXZ0   V5SK40   A0A034WDZ4   A0A034WDE9   A0A0K8UFH9   A0A0A1WLY7   A0A0K8WD79   A0A034W9X1   A0A034WF05   A0A0K8VZ20   A0A034WCE3   A0A0A1XDZ0   W8C7N9   A0A0K8VW59   A0A0A1XMA9   W8BIT2   W8BZB1   W8BPJ7   A0A3R7MFH7   A0A1I8NP15   A0A1L8E1Z8   A0A1I8MZV3   A0A182GH27   A0A1L8E250   T1PDI6   Q8IGI6   A0A1B0B977   A0A1B0GI66   A0A1A9W7H8   A0A2H1VZY9   A0A1A9VJ75   A0A1A9XV32   A0A023EWR1   A0A1B0G1X4   Q175A3   Q175A4   T1GDU5   A0A0L0CD13   A0A1B0AEU1   B4IYB9   A0A0R1DYI5   A0A0B7B521   A0A0J9RWU4   A0A182G6V7   A0A0Q5UJL5   A0A0R1DY95   A0A1W4W5P2   A0A3B0JSY5   A0A0J9RWV3   A0A3B0JVW1   A0A0R3P923   A0A0J9RWU8   A0A0J9RWY6   A0A0Q9WW13   A0A0Q9WQS9   A0A0Q5U4S4   A0A0R3P8U0   Q29DU3   A0A3B0JSW0   A0A0R3P6Q4   A0A1W4VUH3   A0A0R3P6M5   A0A1W4VUI9   A0A0Q5U530   Q8IQQ0   A0A0J9RX36   A0A1W4W5N7   A0A0Q9WU89   Q9VVC5   A0A1W4W722   A0A0J9UMV3   A0A0Q9XCB5   A0A0Q9XQF1   A0A0R1E427   B4QND2   B4HK94   B4PK01   A0A0J9UMU8   A8JNU6   B3NDF1   B4LHN9   B4KW84   A0A0Q9XCC4   A0A336L6L3   A0A336L5D2   A0A226ESN0   A0A0Q9WW68   A0A0P8ZVE0   A0A0Q9WP13  

Pubmed

22118469    26354079    26369729    25830018    28004739    25348373    + More
24495485    25315136    26483478    24945155    17510324    26108605    17994087    17550304    22936249    18057021    15632085    23185243    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356   

EMBL

AGBW02010898    OWR47555.1    KQ461175    KPJ08000.1    KQ459472    KPJ00172.1    + More
NWSH01003119    PCG66912.1    NWSH01001058    PCG72868.1    NWSH01000943    PCG73436.1    ODYU01009993    SOQ54773.1    GDAI01002277    JAI15326.1    LJIG01000119    KRT86821.1    GBXI01007316    JAD06976.1    GEZM01046472    GEZM01046471    GEZM01046470    GEZM01046468    GEZM01046466    JAV77215.1    GEZM01046467    GEZM01046465    JAV77220.1    KF647632    AHB50494.1    GAKP01006592    JAC52360.1    GAKP01006590    JAC52362.1    GDHF01026991    JAI25323.1    GBXI01014747    JAC99544.1    GDHF01005182    GDHF01003198    JAI47132.1    JAI49116.1    GAKP01006591    JAC52361.1    GAKP01006589    JAC52363.1    GDHF01020327    GDHF01008192    GDHF01002123    JAI31987.1    JAI44122.1    JAI50191.1    GAKP01006593    JAC52359.1    GBXI01005110    JAD09182.1    GAMC01007906    JAB98649.1    GDHF01009554    JAI42760.1    GBXI01002589    JAD11703.1    GAMC01007908    JAB98647.1    GAMC01007909    JAB98646.1    GAMC01007907    JAB98648.1    QCYY01001012    ROT81148.1    GFDF01001346    JAV12738.1    JXUM01011039    JXUM01011040    JXUM01011041    JXUM01011042    GFDF01001330    JAV12754.1    KA646852    AFP61481.1    BT001767    AAN71522.1    JXJN01010297    AJWK01011399    AJWK01011400    AJWK01011401    AJWK01011402    AJWK01011403    ODYU01005456    SOQ46333.1    GAPW01000081    JAC13517.1    CCAG010004394    CH477404    EAT41628.1    EAT41627.1    CAQQ02114576    CAQQ02114577    CAQQ02114578    JRES01000577    KNC30102.1    CH916366    EDV96569.1    CM000159    KRK02041.1    KRK02042.1    HACG01040525    HACG01040526    CEK87390.1    CEK87391.1    CM002912    KMZ00159.1    JXUM01045696    KQ561447    KXJ78560.1    CH954178    KQS44071.1    KQS44073.1    KQS44074.1    KRK02043.1    KRK02044.1    KRK02045.1    OUUW01000009    SPP85205.1    KMZ00158.1    KMZ00169.1    SPP85203.1    CH379070    KRT08819.1    KMZ00160.1    KMZ00164.1    KMZ00167.1    KMZ00162.1    CH940647    KRF84469.1    KRF84471.1    KQS44070.1    KQS44072.1    KRT08821.1    EAL30321.2    KRT08820.1    SPP85204.1    KRT08817.1    KRT08818.1    KQS44069.1    AE014296    BT012466    AAN11721.1    AAO41241.2    AAS93737.1    KMZ00163.1    KRF84468.1    KRF84470.1    BT003743    AAF49388.2    AAF49389.2    AAN11722.1    AAO41240.1    AAO41404.1    KMZ00165.1    KMZ00166.1    CH933809    KRG06207.1    KRG06211.1    KRK02039.1    CM000363    EDX10802.1    KMZ00156.1    CH480815    EDW41835.1    EDW94770.1    KRK02040.1    KMZ00157.1    KMZ00161.1    AAN11723.3    ABW08558.1    EDV52013.1    KQS44068.1    EDW69592.1    EDW18491.1    KRG06209.1    KRG06210.1    KRG06208.1    UFQS01002041    UFQT01002041    SSX13049.1    SSX32489.1    SSX13048.1    SSX32488.1    LNIX01000002    OXA60228.1    CH963847    KRF97620.1    CH902618    KPU78554.1    KRF97621.1   

Proteomes

UP000007151    UP000053240    UP000053268    UP000218220    UP000283509    UP000095300    + More
UP000095301    UP000069940    UP000092460    UP000092461    UP000091820    UP000078200    UP000092443    UP000092444    UP000008820    UP000015102    UP000037069    UP000092445    UP000001070    UP000002282    UP000249989    UP000008711    UP000192221    UP000268350    UP000001819    UP000008792    UP000000803    UP000009192    UP000000304    UP000001292    UP000198287    UP000007798    UP000007801   

PRIDE

Q8IGI6    Q8IQQ0    Q9VVC5    A8JNU6   

Pfam

PF16078   2-oxogl_dehyd_N        + More
PF16870   OxoGdeHyase_C
PF02779   Transket_pyr
PF00676   E1_dh

Interpro

IPR005475   Transketolase-like_Pyr-bd        + More
IPR001017   DH_E1       
IPR031717   KGD_C       
IPR032106   2-oxogl_dehyd_N       
IPR011603   2oxoglutarate_DH_E1       
IPR042179   KGD_C_sf       
IPR029061   THDP-binding       

SUPFAM

SSF52518   SSF52518       

Gene 3D

3.40.50.11610    

ProteinModelPortal

A0A212F1D6   A0A194QSN8   A0A194Q3R0   A0A2A4J669   A0A2A4JMC2   A0A2A4JNT4   + More
A0A2H1WNX1   A0A0K8TMF4   A0A0T6BHJ8   A0A0A1X7U1   A0A1Y1LYV4   A0A1Y1LXZ0   V5SK40   A0A034WDZ4   A0A034WDE9   A0A0K8UFH9   A0A0A1WLY7   A0A0K8WD79   A0A034W9X1   A0A034WF05   A0A0K8VZ20   A0A034WCE3   A0A0A1XDZ0   W8C7N9   A0A0K8VW59   A0A0A1XMA9   W8BIT2   W8BZB1   W8BPJ7   A0A3R7MFH7   A0A1I8NP15   A0A1L8E1Z8   A0A1I8MZV3   A0A182GH27   A0A1L8E250   T1PDI6   Q8IGI6   A0A1B0B977   A0A1B0GI66   A0A1A9W7H8   A0A2H1VZY9   A0A1A9VJ75   A0A1A9XV32   A0A023EWR1   A0A1B0G1X4   Q175A3   Q175A4   T1GDU5   A0A0L0CD13   A0A1B0AEU1   B4IYB9   A0A0R1DYI5   A0A0B7B521   A0A0J9RWU4   A0A182G6V7   A0A0Q5UJL5   A0A0R1DY95   A0A1W4W5P2   A0A3B0JSY5   A0A0J9RWV3   A0A3B0JVW1   A0A0R3P923   A0A0J9RWU8   A0A0J9RWY6   A0A0Q9WW13   A0A0Q9WQS9   A0A0Q5U4S4   A0A0R3P8U0   Q29DU3   A0A3B0JSW0   A0A0R3P6Q4   A0A1W4VUH3   A0A0R3P6M5   A0A1W4VUI9   A0A0Q5U530   Q8IQQ0   A0A0J9RX36   A0A1W4W5N7   A0A0Q9WU89   Q9VVC5   A0A1W4W722   A0A0J9UMV3   A0A0Q9XCB5   A0A0Q9XQF1   A0A0R1E427   B4QND2   B4HK94   B4PK01   A0A0J9UMU8   A8JNU6   B3NDF1   B4LHN9   B4KW84   A0A0Q9XCC4   A0A336L6L3   A0A336L5D2   A0A226ESN0   A0A0Q9WW68   A0A0P8ZVE0   A0A0Q9WP13  

PDB

2XT6     E-value=1.86156e-46,     Score=465

KEGG

101737329    K00164 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] | (RefSeq) 2-oxoglutarate dehydrogenas

GO

GO:0030976   GO:0006099   GO:0004591   GO:0009353   GO:0008152   GO:0016624   GO:0008053   GO:0016021   GO:0005525   GO:0005509   GO:0005622   GO:0007264   GO:0008026   GO:0016597  

PANTHER

PTHR23152  

Length:

197

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0633800000000001

Exp number, first 60 AAs:

0.06304

Total prob of N-in:

0.06418

outside

1  -  197

 

 

Pi

14.832011

Theta

15.845288

Tajima's D

-0.192665

CLR

3.948146

CSRT

0.321633918304085

Interpretation

Uncertain