Gene

KWMTBOMO05984

Pre Gene Modal

BGIBMGA002889

Annotation

PREDICTED:_probable_cytosolic_Fe-S_cluster_assembly_factor_GL21135_[Amyelois_transitella]

Location

Bomo_Chr10(-):15763189-15767627      View in EpiBrowser

Full name

Probable cytosolic Fe-S cluster assembly factor GA29080       + More
Probable cytosolic Fe-S cluster assembly factor GL21135      
Probable cytosolic Fe-S cluster assembly factor GJ13047      
Probable cytosolic Fe-S cluster assembly factor GI11683      
Probable cytosolic Fe-S cluster assembly factor GK14772      
Probable cytosolic Fe-S cluster assembly factor GH10760      
Probable cytosolic Fe-S cluster assembly factor CPIJ010948      
Probable cytosolic Fe-S cluster assembly factor AAEL012261      
Probable cytosolic Fe-S cluster assembly factor AGAP009023      
Probable cytosolic Fe-S cluster assembly factor GF22738      
Probable cytosolic Fe-S cluster assembly factor GE22682      
Probable cytosolic Fe-S cluster assembly factor GD17698      
Probable cytosolic Fe-S cluster assembly factor CG17683      

Location in the cell

Cytoplasmic   Reliability : 2.835

CDS

ATGGCATCTCGATTTAGTGGTGCATTACAACTTACGGATCTTGACGATTTCATAACTCCTTCACAGGAATGCGTAAAACCAATCAAAATCGACAAATCTAAAACAAAGACAGGTGCCAAAATAAAGATTGGCGAAGGTGGGTACTTTGATGTGTCAAGCGGAACAGAGCAGAAGTTGAAGAAAGTTGAAATCACCTTAGCAGACTGTCTTGCGTGCAGTGGATGCATCACATCTGCTGAGAGTGTGCTCATTACTAAACAAAGTCAAGAAGAGCTACTTAAGGTATTTTCAGACCGTAAATACACAGACAGTAAAGGAGTGGTGAAGGATGTTAGTTTAATAGTAATATCTCTGTCGCCGCAACCCATACTGTCACTAGCAGCTAGGTACAAGCTACCGCCTGAACATGCCACAAATAAATTAGCAGGGTACTTTAAAAGTCTTGGAGCAGATCTAGTTCTTGACATGACGATAGCAGAAGACTTATCTCTGTTAGAAGCACAGCAAGAATTTGTACAAAGGTATCAGGATCAACAGGCTGATCCCAATGGAAAATATCTTCCGATGTTAGCCAGTTCGTGCCCTGGCTGGGTGTGCTATGCTGAAAAAACGCACGGTAACTTTATACTACCCTACATATCCACCACAAAATCCCCACAACAAATAATGGGTTCTCTGGTAAAGCAATACCTGTCCCGTACTAAGGAGCTTACTCCCGGAGAGGTGTACCACGTGACCGTCATGCCGTGCTACGATAAGAAACTAGAAGCATCTCGGGAGGAATTTTACAATGATTTGCTTAGCTGTCATGATGTAGACTGTGTCATAACTGCGATCGAGCTAGAACAAATGTTGGACAACAGCAACATGTCACTAAACGATGCGGAGAGCTCTTCGTTGGACAGTCCGTGGGGTGAAGGGGCAGTCCGCCGACACCGGGGCTCCGGCTCTGGTGGCGGCGCCGACCATGTCTTCCTCTACGGAGCCGAACAACTCTTTGGAGAGACCGATGCTCAACTCGTGTATAGGAATCTGAGGAATCCAGACTTCAAAGAGGTGACTTTAGAGAGAGACGGCAAAGAGGTGCTTCGTTTCGCGATCGCCAACGGCTTCAGAAACATTCAGAATCTTGTCCAGAAACTAAAGAGGGGGAAGTCTCCCTACCACTACGTCGAAGTCATGGCTTGTCCTTCAGGTTGCCTCAACGGCGGCGCCCAGGTGCGGGTCGGGGGGGGCCAGGCGCGGGCCGCGGGGGGCGAGGCGGGGCGCGAGCTCGTGCTGCGACTAGAGACGCTGTACTCGCAGCTACCGCTGGCCACGCCCGTCGAGAACAAGTTCCTGAGGAAACTGTACACGGACTGGCTCGACGGGAAAGATTCGGATAAAGCCAAGGCCGTCCTGCACACCACGTACCGCGCCGTCGAAAAGTCCGATATCGCCCTTAATATTAAGTGGTAG

Protein

MASRFSGALQLTDLDDFITPSQECVKPIKIDKSKTKTGAKIKIGEGGYFDVSSGTEQKLKKVEITLADCLACSGCITSAESVLITKQSQEELLKVFSDRKYTDSKGVVKDVSLIVISLSPQPILSLAARYKLPPEHATNKLAGYFKSLGADLVLDMTIAEDLSLLEAQQEFVQRYQDQQADPNGKYLPMLASSCPGWVCYAEKTHGNFILPYISTTKSPQQIMGSLVKQYLSRTKELTPGEVYHVTVMPCYDKKLEASREEFYNDLLSCHDVDCVITAIELEQMLDNSNMSLNDAESSSLDSPWGEGAVRRHRGSGSGGGADHVFLYGAEQLFGETDAQLVYRNLRNPDFKEVTLERDGKEVLRFAIANGFRNIQNLVQKLKRGKSPYHYVEVMACPSGCLNGGAQVRVGGGQARAAGGEAGRELVLRLETLYSQLPLATPVENKFLRKLYTDWLDGKDSDKAKAVLHTTYRAVEKSDIALNIKW

Description

Component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for maturation of extramitochondrial Fe/S proteins (By similarity).

Similarity

Belongs to the NARF family.

Keywords

4Fe-4S   Complete proteome   Iron   Iron-sulfur   Metal-binding   Reference proteome   Alternative splicing  

Feature

chain  Probable cytosolic Fe-S cluster assembly factor GA29080
splice variant  In isoform E.

Uniprot

H9J054   A0A2H1WWT0   A0A2A4J3F6   A0A3S2LJ41   A0A194Q481   A0A212FCC7   + More
A0A2J7QBJ2   K7ITM6   A0A232EUT2   W8C5V4   A0A034WDX6   A0A067QRX0   A0A1Y1M5W2   A0A0K8V5V1   A0A0A1WSJ7   A0A336LLA2   A0A0C9RRV6   A0A0L0CM14   A0A1J1IZQ1   N6TDL0   B5DK31   B4GXC8   A0A0L7RH92   F4WWP7   B4LQR5   B4KFU7   A0A1I8N669   E0VTF3   U5EZ89   A0A1I8PHB4   B4MUM8   A0A1A9WES9   B4JBE6   A0A195D3I9   A0A158NJ16   E1ZWU7   A0A151JMZ4   A0A195BL64   A0A195FIN1   A0A1Q3G5J1   A0A1L8DXG4   A0A026W553   A0A158NJ17   A0A182GHK6   B0WU52   W5JPM0   A0A1A9VFI8   A0A1W4XQ27   A0A1B6JNZ4   Q16ML2   A0A0K8TSI8   A0A151X734   A0A1B6GK03   A0A0M4ET66   A0A2M4AQG2   A0A1A9Y0B6   A0A1B0B0G6   C3Z6S6   A0A182F424   E2CA59   A0A1A9ZIQ5   E9IIV5   A0A182YFR4   D3TN76   A0A1S3H7I2   A0A1B6CJK3   A0A182PED5   A0A182X8A3   Q7PWB8   A0A182TEE3   A0A182IEA1   A0A182V219   A0A182QPN3   A0A182RLD2   A0A182JJ84   A0A1S3H7K7   A0A182JV56   A0A182T3X9   A0A182VU29   A0A182NBD9   A0A1W4WAC4   A0A084VKL3   A0A310SHD8   U4U972   A0A182MD44   A0A151N276   A0A1W4VYK1   R7TEU0   A0A2I0LTJ2   B3N018   A0A226PQB6   U3JKT3   B4ISL0   A0A0Q3XBF6   A0A3B0KIE8   E1C8S8   A0A091EH62   A0A0J9R680   B4NSS7   Q8SYS7  

Pubmed

19121390    26354079    22118469    20075255    28648823    24495485    + More
25348373    24845553    28004739    25830018    26108605    23537049    15632085    17994087    21719571    25315136    20566863    21347285    20798317    24508170    26483478    20920257    23761445    17510324    26369729    18563158    21282665    25244985    20353571    12364791    24438588    22293439    23254933    23371554    24621616    15592404    22936249    10731132    12537572    12537569   

EMBL

BABH01018967    ODYU01011649    SOQ57529.1    NWSH01003683    PCG65933.1    RSAL01000002    + More
RVE54968.1    KQ459472    KPJ00154.1    AGBW02009199    OWR51399.1    NEVH01016298    PNF25948.1    NNAY01002087    OXU22119.1    GAMC01008861    JAB97694.1    GAKP01005211    JAC53741.1    KK853027    KDR12296.1    GEZM01040243    JAV80921.1    GDHF01018083    JAI34231.1    GBXI01012671    JAD01621.1    UFQT01000003    SSX17127.1    GBYB01011275    JAG81042.1    JRES01000198    KNC33345.1    CVRI01000063    CRL04646.1    APGK01041744    KB740997    ENN75833.1    CH379061    CH479195    KQ414592    KOC70235.1    GL888412    EGI61369.1    CH940649    CH933807    DS235763    EEB16659.1    GANO01001226    JAB58645.1    CH963857    CH916368    KQ976885    KYN07468.1    ADTU01017351    GL434905    EFN74344.1    KQ978889    KYN27655.1    KQ976453    KYM85509.1    KQ981523    KYN40127.1    GFDL01000009    JAV35036.1    GFDF01002951    JAV11133.1    KK107474    EZA50159.1    JXUM01064010    KQ562278    KXJ76251.1    DS232100    ADMH02000473    ETN66337.1    GECU01006725    JAT00982.1    CH477858    GDAI01000264    JAI17339.1    KQ982454    KYQ56186.1    GECZ01006987    JAS62782.1    CP012523    ALC40395.1    GGFK01009714    MBW43035.1    JXJN01006757    GG666590    EEN51522.1    GL453920    EFN75214.1    GL763562    EFZ19450.1    EZ422878    ADD19154.1    GEDC01023659    JAS13639.1    AAAB01008984    APCN01006141    AXCN02000625    ATLV01014228    KE524948    KFB38507.1    KQ761155    OAD58184.1    KB632100    ERL88858.1    AXCM01000227    AKHW03004153    KYO30827.1    AMQN01013562    KB310300    ELT92002.1    AKCR02000102    PKK20755.1    CH902638    AWGT02000031    OXB81894.1    AGTO01020838    CH891577    LMAW01000001    KQL61395.1    OUUW01000010    SPP85536.1    AADN05000376    KN121905    KFO34761.1    CM002911    KMY91501.1    CH982438    AE013599    AY071338   

Proteomes

UP000005204    UP000218220    UP000283053    UP000053268    UP000007151    UP000235965    + More
UP000002358    UP000215335    UP000027135    UP000037069    UP000183832    UP000019118    UP000001819    UP000008744    UP000053825    UP000007755    UP000008792    UP000009192    UP000095301    UP000009046    UP000095300    UP000007798    UP000091820    UP000001070    UP000078542    UP000005205    UP000000311    UP000078492    UP000078540    UP000078541    UP000053097    UP000069940    UP000249989    UP000002320    UP000000673    UP000078200    UP000192223    UP000008820    UP000075809    UP000092553    UP000092443    UP000092460    UP000001554    UP000069272    UP000008237    UP000092445    UP000076408    UP000085678    UP000075885    UP000076407    UP000007062    UP000075902    UP000075840    UP000075903    UP000075886    UP000075900    UP000075880    UP000075881    UP000075901    UP000075920    UP000075884    UP000192221    UP000030765    UP000030742    UP000075883    UP000050525    UP000014760    UP000053872    UP000007801    UP000198419    UP000016665    UP000002282    UP000051836    UP000268350    UP000000539    UP000028990    UP000000304    UP000000803   

PRIDE

H9J054    B0WU52    B4NSS7    Q8SYS7   

Pfam

PF02256   Fe_hyd_SSU        + More
PF02906   Fe_hyd_lg_C
PF00610   DEP
PF00615   RGS
PF00631   G-gamma
PF18148   RGS_DHEX

Interpro

IPR003149   Fe_hydrogenase_ssu        + More
IPR004108   Fe_hydrogenase_lsu_C       
IPR009016   Fe_hydrogenase       
IPR036390   WH_DNA-bd_sf       
IPR036284   GGL_sf       
IPR036305   RGS_sf       
IPR036388   WH-like_DNA-bd_sf       
IPR016137   RGS       
IPR015898   G-protein_gamma-like_dom       
IPR000591   DEP_dom       
IPR040759   RGS_DHEX       

SUPFAM

SSF53920   SSF53920        + More
SSF46785   SSF46785       
SSF48670   SSF48670       
SSF48097   SSF48097       

Gene 3D

1.10.10.10     4.10.260.10    

CDD

cd00068  GGL

ProteinModelPortal

H9J054   A0A2H1WWT0   A0A2A4J3F6   A0A3S2LJ41   A0A194Q481   A0A212FCC7   + More
A0A2J7QBJ2   K7ITM6   A0A232EUT2   W8C5V4   A0A034WDX6   A0A067QRX0   A0A1Y1M5W2   A0A0K8V5V1   A0A0A1WSJ7   A0A336LLA2   A0A0C9RRV6   A0A0L0CM14   A0A1J1IZQ1   N6TDL0   B5DK31   B4GXC8   A0A0L7RH92   F4WWP7   B4LQR5   B4KFU7   A0A1I8N669   E0VTF3   U5EZ89   A0A1I8PHB4   B4MUM8   A0A1A9WES9   B4JBE6   A0A195D3I9   A0A158NJ16   E1ZWU7   A0A151JMZ4   A0A195BL64   A0A195FIN1   A0A1Q3G5J1   A0A1L8DXG4   A0A026W553   A0A158NJ17   A0A182GHK6   B0WU52   W5JPM0   A0A1A9VFI8   A0A1W4XQ27   A0A1B6JNZ4   Q16ML2   A0A0K8TSI8   A0A151X734   A0A1B6GK03   A0A0M4ET66   A0A2M4AQG2   A0A1A9Y0B6   A0A1B0B0G6   C3Z6S6   A0A182F424   E2CA59   A0A1A9ZIQ5   E9IIV5   A0A182YFR4   D3TN76   A0A1S3H7I2   A0A1B6CJK3   A0A182PED5   A0A182X8A3   Q7PWB8   A0A182TEE3   A0A182IEA1   A0A182V219   A0A182QPN3   A0A182RLD2   A0A182JJ84   A0A1S3H7K7   A0A182JV56   A0A182T3X9   A0A182VU29   A0A182NBD9   A0A1W4WAC4   A0A084VKL3   A0A310SHD8   U4U972   A0A182MD44   A0A151N276   A0A1W4VYK1   R7TEU0   A0A2I0LTJ2   B3N018   A0A226PQB6   U3JKT3   B4ISL0   A0A0Q3XBF6   A0A3B0KIE8   E1C8S8   A0A091EH62   A0A0J9R680   B4NSS7   Q8SYS7  

PDB

5LA3     E-value=3.69502e-32,     Score=346

KEGG

101738913    no KO assigned | (RefSeq) probable cytosolic Fe-S cluster assembly factor GL21135

GO

GO:0046872   GO:0051539   GO:0016226   GO:0097361   GO:0035556   GO:0007186   GO:0002244   GO:0010468   GO:0001666   GO:0032364  

Length:

485

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01099

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00198

outside

1  -  485

 

 

Pi

21.716092

Theta

22.7644

Tajima's D

-0.392346

CLR

0.925003

CSRT

0.267436628168592

Interpretation

Uncertain