Gene

KWMTBOMO05983

Pre Gene Modal

BGIBMGA002890

Annotation

gag-pol_polyprotein?_partial_[Lasius_niger]

Location

Bomo_Chr10(-):15747467-15755137      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 1.12 PlasmaMembrane   Reliability : 1.106

CDS

ATGTTTACGTCAGAAAATAATGACGACTATGACTGCTCTTTACTAACATACAAAGAAGCTGTGACTGGCACCGACAGACGAAATTGGGAGAAGGCGATACAATCTGAAATGGAATCATTACAGAAAAATAATACCTGGGTATTAGTAGACAAGTCAGAAGCCAAAGGACACAAAATACTGTCGAACAAATGGGTATTTCGGATTAAAGATGACGGTACGTACAAGGCTAGATTAGTCGTACGTGGATGCGAGCAGAAAGGAAACCTGGATTTCGAAGACATTTATAGCCCAGTAGTAAGTCAATCTGCATTAAAAACTTTATTAGCAATTGCCGCATCTAAATCTTACTACTTCATGACATTTGACATCAAGACAGCTTTCTTATACGGAGAGTTATCAGATGAAGTTTATATGAAATTGCCTGTTGGCTATGAGACTAACTGCAATACTACTGAAGTAGTTTGCCGATTAAAAAAATCTTTGTACGGATTAAAACAAGCTCCATTTACATGGAACAAAACTTTTACCCAAGCGATGTTTGATTTGGGATTCAAGACAATCAAAACAGATCGATGCGTTTTCATAAACGAAGATAAATCAATAATAATCGGACTATTCGTTGATGATGGACTTGTCATAGGAAAAGATAAGAAAAAGATCGAAGCTATTTTGAAGAAACTTGAAACCAAATTTCAAATGAAAAAGAATGAAAATCCAAGTACTTATCTGGGTATGGAAATAAAAAACTCAAAAGAAGGAATAGTTCTTACTCAGAGATCCTACATAATTGACGTACTGGAAAAATACAACATGAAAAATGCCAAACCTTGTGACACGCCCGCAAGTAGCGATTCAAAGTCGATACAGGAAACTGCCCAGGAGAAGGAATATCCCTATAGGGAAGCAGTGGGAAGTTTACTGTACCTGTCTACCAGAACCAGACCAGATATCGCACAAGCGGTCAATCTAGTTAGCAGGAAGGTCGAAAACCCTACTAGAGAAGACGTTACCAAAGTCAAGAAAATATTCAAATATTTAGTGGGAACCAAACATAAAGGCATTTTGTTCAAACGAAACAAACCGATAGAGAGCATCGATGCTTACAGCGACTCGGATTATGCTGGAGACCCATTGACGCGAAGAAGCACTTCTGGTTCCGTGCTAATGATAGCCGATGGACCAATATCATGGGCATCCAAGAGGCAGCCTATAGTAGCGCTATCGTCGACTGAAGCCGAGTACATAGCCGCAGCAGACTGTTGCAAAGAGGCATTGTATCTCAAATCTCTATTACAGGAAACAACCGGTTTGGACATAAAAATAAATCTACATGTTGATAACCAAAGTTCGATTCAACTTGTGAAGTCTGGATCCTTCAACAAAAGCCGCACAGTCTGCGAGTATCGTTGCCGTGAGATGAGTGGTCGCGAGCTGATCGCAGCGTATAAGATATGGCTCTTATTTGGAGCCCTAGCGGAAGTCGTGACGGGCACGGGTTTTGGGAGATGCCCGGCCTACCCGTCTCTACCGAATTTTGACGCACAGAGGATGACCGGCATTTGGTACGAAGTGGAGCGTTCGTTCTACTTGGTGGAGATAGCCGCGAGTTGCACCCGACTTAATGTCACCCTTAACGACAGGGGTTACTTCCAGATCACCGTCGATTCTGTCAACAGATGGACAGGAAGCCAGTCAACTTCATACGGCATCGGCATTCCGTCGTACAATGGGTCGTCAGTGTTTCGATATAAACTAAACAACCGCATGCCTTATTTGATTGGGAGGCTGCTCCCGGGCGCGGGGCAGTACAACATACTCTTCACGGATTACGATCAGTTCGCGCTCGTCTGGTCCTGTAGTAGCGTCAGTCTTGCGCATTCAGATCGAATTTGGGTGTTAGGCCGAAAACAAGAGATCGAAGCGGACGTCCGAGTTCAGATCTACGCCATCATGCAAGAACTGAGACTGGACCCAGACAGGCTGTTCATATCCAAAAACACTAACTGCACCGACTCATTGGAGGCTGAATAA

Protein

MFTSENNDDYDCSLLTYKEAVTGTDRRNWEKAIQSEMESLQKNNTWVLVDKSEAKGHKILSNKWVFRIKDDGTYKARLVVRGCEQKGNLDFEDIYSPVVSQSALKTLLAIAASKSYYFMTFDIKTAFLYGELSDEVYMKLPVGYETNCNTTEVVCRLKKSLYGLKQAPFTWNKTFTQAMFDLGFKTIKTDRCVFINEDKSIIIGLFVDDGLVIGKDKKKIEAILKKLETKFQMKKNENPSTYLGMEIKNSKEGIVLTQRSYIIDVLEKYNMKNAKPCDTPASSDSKSIQETAQEKEYPYREAVGSLLYLSTRTRPDIAQAVNLVSRKVENPTREDVTKVKKIFKYLVGTKHKGILFKRNKPIESIDAYSDSDYAGDPLTRRSTSGSVLMIADGPISWASKRQPIVALSSTEAEYIAAADCCKEALYLKSLLQETTGLDIKINLHVDNQSSIQLVKSGSFNKSRTVCEYRCREMSGRELIAAYKIWLLFGALAEVVTGTGFGRCPAYPSLPNFDAQRMTGIWYEVERSFYLVEIAASCTRLNVTLNDRGYFQITVDSVNRWTGSQSTSYGIGIPSYNGSSVFRYKLNNRMPYLIGRLLPGAGQYNILFTDYDQFALVWSCSSVSLAHSDRIWVLGRKQEIEADVRVQIYAIMQELRLDPDRLFISKNTNCTDSLEAE

Similarity

Belongs to the terpene synthase family.

Uniprot

A0A0K8TKJ8   A0A139WJX6   A0A2N9GRB2   A0A2N9GCE7   A0A151QND1   A0A2N9I7V5   + More
A0A1J3DEI6   A0A2N9HZR4   A0A2N9HJ76   A0A2N9GBS9   A0A2N9I6N4   A0A2N9EIR6   A0A2N9FRN5   A0A2N9ELY1   A0A2N9FQJ1   A0A2N9FZ01   A0A2N9FV67   A0A2N9H6B2   A0A2N9I8Q5   A0A2N9HZ75   H9JF18   A0A2N9ETC8   A0A2N9EK90   A0A2N9GGS7   A0A2N9GA80   A0A2N9GBF3   A0A2N9IR42   A0A2N9ID98   A0A2N9EE21   A0A2N9FW82   A0A2N9IGN4   A0A2N9HKJ4   A0A2N9FGL6   A0A2N9J5P5   A0A2N9I0Q5   A0A0J7KRG1  

Pubmed

26369729    18362917    19820115    22057054    19121390   

EMBL

GDAI01002967    JAI14636.1    KQ971338    KYB28117.1    OIVN01002268    SPD02135.1    + More
OIVN01001729    SPC97049.1    KQ485682    KYP31774.1    OIVN01004910    SPD19931.1    GEVI01015824    JAU16496.1    OIVN01004420    SPD17230.1    OIVN01003897    SPD14257.1    OIVN01001707    SPC96839.1    OIVN01004879    SPD19723.1    OIVN01000116    SPC74628.1    OIVN01001091    SPC89740.1    OIVN01000183    SPC75833.1    OIVN01001052    SPC89229.1    OIVN01001309    SPC92453.1    OIVN01001196    SPC91020.1    OIVN01002904    SPD07378.1    OIVN01005024    SPD20514.1    OIVN01004379    SPD17029.1    BABH01033959    BABH01033960    OIVN01000557    SPC82046.1    OIVN01000147    SPC75222.1    OIVN01001890    SPC98658.1    OIVN01001666    SPC96375.1    OIVN01001669    SPC96464.1    OIVN01006160    SPD26619.1    OIVN01005312    SPD21871.1    OIVN01000036    SPC73022.1    OIVN01001520    SPC94877.1    OIVN01005657    SPD23465.1    OIVN01003569    SPD12194.1    OIVN01000823    SPC86071.1    OIVN01006372    SPD31671.1    OIVN01004867    SPD19656.1    LBMM01003976    KMQ92933.1   

Proteomes

UP000007266    UP000075243    UP000005204    UP000036403   

PRIDE

H9JF18   

Pfam

PF07727   RVT_2        + More
PF00098   zf-CCHC
PF00665   rve
PF13976   gag_pre-integrs
PF01397   Terpene_synth
PF03936   Terpene_synth_C

Interpro

IPR013103   RVT_2        + More
IPR039537   Retrotran_Ty1/copia-like       
IPR036397   RNaseH_sf       
IPR001584   Integrase_cat-core       
IPR036875   Znf_CCHC_sf       
IPR012337   RNaseH-like_sf       
IPR001878   Znf_CCHC       
IPR025724   GAG-pre-integrase_dom       
IPR008949   Isoprenoid_synthase_dom_sf       
IPR005630   Terpene_synthase_metal-bd       
IPR008930   Terpenoid_cyclase/PrenylTrfase       
IPR034741   Terpene_cyclase-like_1_C       
IPR036965   Terpene_synth_N_sf       
IPR001906   Terpene_synth_N       

SUPFAM

SSF57756   SSF57756        + More
SSF53098   SSF53098       
SSF48576   SSF48576       
SSF48239   SSF48239       

Gene 3D

3.30.420.10     1.10.600.10     1.50.10.130    

ProteinModelPortal

A0A0K8TKJ8   A0A139WJX6   A0A2N9GRB2   A0A2N9GCE7   A0A151QND1   A0A2N9I7V5   + More
A0A1J3DEI6   A0A2N9HZR4   A0A2N9HJ76   A0A2N9GBS9   A0A2N9I6N4   A0A2N9EIR6   A0A2N9FRN5   A0A2N9ELY1   A0A2N9FQJ1   A0A2N9FZ01   A0A2N9FV67   A0A2N9H6B2   A0A2N9I8Q5   A0A2N9HZ75   H9JF18   A0A2N9ETC8   A0A2N9EK90   A0A2N9GGS7   A0A2N9GA80   A0A2N9GBF3   A0A2N9IR42   A0A2N9ID98   A0A2N9EE21   A0A2N9FW82   A0A2N9IGN4   A0A2N9HKJ4   A0A2N9FGL6   A0A2N9J5P5   A0A2N9I0Q5   A0A0J7KRG1  

PDB

2HZR     E-value=3.05069e-11,     Score=167

KEGG

101739203    K03098 apolipoprotein D and lipocalin family protein | (RefSeq) apolipoprotein D-like

GO

GO:0000943   GO:0003676   GO:0004491   GO:0015074   GO:0008270   GO:0000287   GO:0010333   GO:0031409   GO:0016579   GO:0006412   GO:0005622   GO:0006508   GO:0007264   GO:0008026   GO:0016597  

PANTHER

PTHR11439  

Length:

676

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.50238

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01399

outside

1  -  676

 

 

Pi

22.272452

Theta

24.41466

Tajima's D

-0.857142

CLR

1.619475

CSRT

0.165291735413229

Interpretation

Uncertain