Gene

KWMTBOMO05979  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA002811

Annotation

ribosomal_protein_L10_[Bombyx_mori]

Location

Bomo_Chr10(+):15708838-15710742      View in EpiBrowser

Full name

60S ribosomal protein L10      

Alternative Name

QM protein homolog
dQM

Location in the cell

Cytoplasmic   Reliability : 3.118

CDS

ATGGGGCGCCGGCCAGCGAGATGCTACCGGTACTGCAAAAATAAACCGTATCCGAAATCGAGGTTCTGTCGGGGTGTACCTGATCCCAAGATCCGTATCTTCGATTTGGGTAAGAAGAGAGCGACCGTTGACGACTTTCCACTGTGCGTGCACTTGGTGTCCGACGAATATGAACAGCTGAGCTCAGAGGCTTTGGAGGCAGGACGTATCTGCTGCAATAAGTACCTCGTAAAGAACTGCGGAAAGGATCAGTTCCATATCCGCATGAGACTTCACCCTTTCCACGTTATCCGCATCAATAAAATGTTATCATGCGCTGGAGCTGATAGGCTCCAGACTGGGATGCGTGGTGCGTTTGGCAAGCCTCAGGGTACTGTAGCACGTGTTCGCATTGGACAGCCCATCATGTCCGTGCGCTCTAGTGACAGGTGGAAGGCACAGGTCATCGAGGCTCTGCGCCGTGCCAAGTTCAAGTTCCCCGGACGTCAAAAGATCTACGTATCAAAGAAGTGGGGTTTCACAAAGTATGAACGTGATGAGTTTGAGAAGCTGCGTGAAGAGGGCCGCCTCGCTAATGACGGCTGCATTGTGCAGTACCGCCCGGAACATGGACCTCTCGACGCTTGGAGGAAGGTTCAGGCTGAGATCCTCAATGTATAA

Protein

MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPLDAWRKVQAEILNV

Subunit

Component of the large ribosomal subunit. Mature ribosomes consist of a small (40S) and a large (60S) subunit. The 40S subunit contains about 33 different proteins and 1 molecule of RNA (18S). The 60S subunit contains about 49 different proteins and 3 molecules of RNA (28S, 5.8S and 5S) (By similarity).

Similarity

Belongs to the universal ribosomal protein uL16 family.

Keywords

Ribonucleoprotein   Ribosomal protein   3D-structure   Complete proteome   Reference proteome  

Feature

chain  60S ribosomal protein L10

Uniprot

Q5UAT0   O96647   Q95P53   A0A343EU21   A0A3G1T1I2   G0ZEI5   + More
A0A2H1VRE1   A0A2A4J2L9   Q95PD4   D1LYN6   A9LSA7   A0A0A6ZBT6   E7DZ67   A0A3B0EWR3   A0A194QWM7   E2ICL3   I4DLV3   I4DIH6   G9I0X4   S4NRG4   Q6F451   V5I9Z7   D6X1Y2   Q4GXK7   A0A0P4VX82   R4FPP5   A0A212FCE0   A0A1B6CE57   A0A224XXI3   A0A0V0G3X8   A0A023FB17   A0A171B8I2   A0A067RJI8   J3JZ76   A0A1B6GUA0   M9TNB1   A0A1D1ZHF4   A0A2Z4G631   R4V333   J9K3S4   C4WRI6   A0A0A9XIQ7   A0A2H8TNP4   A0A1W4XCR6   A0A0K8T4R0   A0A1B6KHY4   Q29CT9   B4GE62   B3NEI2   A0A2P8YJS1   B4IKS9   B4QLV8   Q6XIN5   A0A146KUP6   A0A1A9YSZ4   A0A1A9VFU6   A0A1B0B2K1   A0A1A9ZZ39   A0A1A9WYL7   D3TLP4   Q4GXK4   A0A0L0BXQ3   A0A0K8TQF6   B4MCB4   A0A0A9XQZ2   A0A1W4V4Q2   A0A069DQW9   A0A3B0K6S9   A8CAF4   M9PIM0   O61231   B3MX05   B4NA02   A0A0C9QKM0   A0A1D2MZM7   A0A1Y1LHF9   R4WCY6   A0A034VMK7   A0A0C9RWH7   B4JHQ7   E0VGQ3   D1FPH9   B4KAU3   A0A1I8NLX1   A0A1L8EHA7   T1PCE2   A0A0A1X8A0   A0A1S4EAU6   A0A3Q0IWT8   K7IRM1   E9I9Q0   A0A2A3E048   V9IM55   A0A087ZQ36   A0A336M8R2   A0A226D368   A0A2J7Q8K2   Q1HRT6   A0A195B363   A0A158NTD0  

Pubmed

19121390    25528750    26354079    22651552    23622113    18362917    + More
19820115    27129103    22118469    25474469    24845553    22516182    23537049    23950915    29889877    25401762    15632085    17994087    29403074    22936249    14525923    17550304    26823975    20353571    26108605    26369729    26334808    17760985    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    9524813    12537569    23636399    27289101    28004739    23691247    25348373    20566863    20441151    25315136    25830018    20075255    21282665    17204158    17519023    17510324    21347285   

EMBL

BABH01018976    AY769278    AAV34820.1    AF099012    AF395838    AAK73358.1    + More
MF067294    ASM61892.1    MG992401    AXY94839.1    JF265063    AEL28894.1    ODYU01003953    SOQ43346.1    NWSH01003683    PCG65928.1    AF368032    AAK52067.1    GU084310    ACY95343.1    EU258622    ABX54738.1    JX134107    AGF69542.1    HQ424770    ADT80714.1    RBVL01000105    RKO12025.1    KQ461175    KPJ07976.1    HM467199    ADK54937.1    AK402271    BAM18893.1    AK401094    KQ459472    BAM17716.1    KPJ00149.1    JN542722    AEW31302.1    GAIX01012876    JAA79684.1    AB180439    BAD26683.1    GALX01002065    JAB66401.1    KQ971371    EFA10183.1    AM049016    CAJ17252.1    GDKW01001312    JAI55283.1    ACPB03000492    GAHY01000774    JAA76736.1    AGBW02009199    OWR51404.1    GEDC01025551    JAS11747.1    GFTR01003705    JAW12721.1    GECL01003732    JAP02392.1    GBBI01000589    JAC18123.1    GEMB01000145    JAS02968.1    KK852473    KDR23143.1    APGK01038535    BT128557    KB740960    KB631679    AEE63514.1    ENN77011.1    ERL85349.1    GECZ01003749    JAS66020.1    KC473164    AGJ51964.1    GDJX01001648    JAT66288.1    MG983772    AWV96607.1    KC632379    AGM32193.1    ABLF02024124    AK339790    BAH70506.1    GBHO01024078    JAG19526.1    GFXV01003982    MBW15787.1    GBRD01005323    JAG60498.1    GEBQ01028910    JAT11067.1    CH475408    EAL29298.2    CH479182    EDW33897.1    CH954178    EDV52817.1    PYGN01000545    PSN44497.1    CH480856    EDW52680.1    CM000363    CM002912    EDX11546.1    KMZ01280.1    AY231795    CM000159    AAR09818.1    EDW95586.1    GDHC01018415    JAQ00214.1    JXJN01007683    CCAG010001331    EZ422346    ADD18622.1    AM049019    CAJ17255.1    JRES01001178    KNC24771.1    GDAI01001207    JAI16396.1    CH940657    EDW63196.1    GBHO01024079    JAG19525.1    GBGD01002842    JAC86047.1    OUUW01000014    SPP88382.1    AJVK01007414    EU045346    ABV44743.1    AE014296    AGB94926.1    U49721    AY070910    BT003580    CH902627    EDV33985.1    CH964232    EDW81757.1    GBYB01015333    JAG85100.1    LJIJ01000352    ODM98472.1    GEZM01055233    JAV73079.1    AK417044    BAN20259.1    GAKP01015907    JAC43045.1    GBYB01013355    JAG83122.1    CH916369    EDV93896.1    DS235150    EEB12559.1    EZ419729    ACY69902.1    CH933806    EDW13616.1    GFDG01000679    JAV18120.1    KA645608    AFP60237.1    GBXI01007156    JAD07136.1    GL761846    EFZ22717.1    KZ288507    PBC25145.1    JR052951    AEY61827.1    UFQT01000693    SSX26605.1    LNIX01000040    OXA39177.1    NEVH01016952    PNF24914.1    DQ440008    EF173366    CH477244    ABF18041.1    ABM68579.1    EAT46292.1    KQ976625    KYM78933.1    ADTU01025840   

Proteomes

UP000005204    UP000218220    UP000276569    UP000053240    UP000053268    UP000007266    + More
UP000015103    UP000007151    UP000027135    UP000019118    UP000030742    UP000007819    UP000192223    UP000001819    UP000008744    UP000008711    UP000245037    UP000001292    UP000000304    UP000002282    UP000092443    UP000078200    UP000092460    UP000092445    UP000091820    UP000092444    UP000037069    UP000008792    UP000192221    UP000268350    UP000092462    UP000000803    UP000007801    UP000007798    UP000094527    UP000001070    UP000009046    UP000009192    UP000095300    UP000095301    UP000079169    UP000002358    UP000242457    UP000005203    UP000198287    UP000235965    UP000008820    UP000078540    UP000005205   

PRIDE

Q5UAT0    O96647    Q95P53    M9PIM0    O61231   

Pfam

PF00252   Ribosomal_L16

Interpro

IPR018255   Ribosomal_L10e_CS        + More
IPR036920   Ribosomal_L10e/L16_sf       
IPR016180   Ribosomal_L10e/L16       
IPR001197   Ribosomal_L10e       

SUPFAM

SSF54686   SSF54686       

Gene 3D

3.90.1170.10    

CDD

cd01433  Ribosomal_L16_L10e

ProteinModelPortal

Q5UAT0   O96647   Q95P53   A0A343EU21   A0A3G1T1I2   G0ZEI5   + More
A0A2H1VRE1   A0A2A4J2L9   Q95PD4   D1LYN6   A9LSA7   A0A0A6ZBT6   E7DZ67   A0A3B0EWR3   A0A194QWM7   E2ICL3   I4DLV3   I4DIH6   G9I0X4   S4NRG4   Q6F451   V5I9Z7   D6X1Y2   Q4GXK7   A0A0P4VX82   R4FPP5   A0A212FCE0   A0A1B6CE57   A0A224XXI3   A0A0V0G3X8   A0A023FB17   A0A171B8I2   A0A067RJI8   J3JZ76   A0A1B6GUA0   M9TNB1   A0A1D1ZHF4   A0A2Z4G631   R4V333   J9K3S4   C4WRI6   A0A0A9XIQ7   A0A2H8TNP4   A0A1W4XCR6   A0A0K8T4R0   A0A1B6KHY4   Q29CT9   B4GE62   B3NEI2   A0A2P8YJS1   B4IKS9   B4QLV8   Q6XIN5   A0A146KUP6   A0A1A9YSZ4   A0A1A9VFU6   A0A1B0B2K1   A0A1A9ZZ39   A0A1A9WYL7   D3TLP4   Q4GXK4   A0A0L0BXQ3   A0A0K8TQF6   B4MCB4   A0A0A9XQZ2   A0A1W4V4Q2   A0A069DQW9   A0A3B0K6S9   A8CAF4   M9PIM0   O61231   B3MX05   B4NA02   A0A0C9QKM0   A0A1D2MZM7   A0A1Y1LHF9   R4WCY6   A0A034VMK7   A0A0C9RWH7   B4JHQ7   E0VGQ3   D1FPH9   B4KAU3   A0A1I8NLX1   A0A1L8EHA7   T1PCE2   A0A0A1X8A0   A0A1S4EAU6   A0A3Q0IWT8   K7IRM1   E9I9Q0   A0A2A3E048   V9IM55   A0A087ZQ36   A0A336M8R2   A0A226D368   A0A2J7Q8K2   Q1HRT6   A0A195B363   A0A158NTD0  

PDB

4V6W     E-value=1.38087e-108,     Score=1001

KEGG

692602    K02866 large subunit ribosomal protein L10e | (RefSeq) RpL10, Qm; ribosomal protein L10

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0003735   GO:0006412   GO:0005840   GO:0000027   GO:0022625   GO:0043025   GO:0002181   GO:0022626   GO:0005737   GO:0005622   GO:0008270   GO:0006508   GO:0007264   GO:0008026   GO:0016597  

PANTHER

PTHR11726  

Length:

219

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00248

Exp number, first 60 AAs:

0

Total prob of N-in:

0.34158

outside

1  -  219

 

 

Pi

17.841406

Theta

14.715148

Tajima's D

0.521419

CLR

0.73078

CSRT

0.534473276336183

Interpretation

Uncertain