Gene

KWMTBOMO05978

Pre Gene Modal

BGIBMGA002893

Annotation

PREDICTED:_E3_ubiquitin-protein_ligase_MGRN1_[Bombyx_mori]

Location

Bomo_Chr10(-):15686470-15704027      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.909

CDS

ATGGGTGTACTAGCGAGTCGCCAGAATCCAGGACTAGAAGACGCTGATATTATATCCAACCATGCCTACAAGTACCCACCGAGATCCGGTAATTACTTCGGGAGCCACTTTATAATGGGAGGCGAAAGATTTGATACTCCACAACCAGAGGCTTACCTCTTTGGTGAAAATGCTGATTTGAACTTTCTAGGCAGTAGACCGACTCCGTTCCCTTACCCCCCGCCGCAGTCAAACGAGCCTACGAAAACGCTAAAAAGTCTAGTGAACATACGTAAGGAGTCGCTACGTTTCATTCGCTGCCCTGAGCCATTGAGTAAATTAGCAGACAACCAGATTGGTGATGGTGTTATGAAATCACCAGAATCAAATGGAAAGGGGACATACTATAATATAGAGTTTACTTTTGACTGTGACGCTAGATGCGCTATCACTGTCCATTATTTTTGCACTGAAGAGGTTACTCCTGCTGGTGTTGTATATTACCCGCGAGACCCGACAATGAGTTCGCAAACGTACCACTACAAGAAAGGTGCGAATCAACAGTTTTGTCAGATCTCTCACGTGTTTGATCCCTCGAAATATTCAGAAGAAGACCTACTGTACAACGCTGACAAGGAATTAATTCCGATTGCCATATATTGCGTGGTTGATGAAGGGCAAGACGAAATAAGGCAGTCCCACACAACCATTGCGGTAGTCGAGAAACATTCCGACGGAACGTACGTGTTGAAAGCTTTAAAACAAAAACTGTTTGTTGATGGCCTTTGCTACCTGTTGCAAGAAATATACGGAATCGAGAACAAAAATTTGGATTCTAAGCCGACTTCAGACTCTGAAACTGAAGAGGGCGGGTCGGAATGCGTGATCTGCATGTGCGACACGCGCGACACGCTGATCCTGCCGTGCCGACACCTGTGCCTGTGCAACTCGTGCGCGGACTCGCTGCGCTACCAGGCCAACAACTGCCCGATCTGCCGCGCTCCCTTCCGCGCCCTGCTGCAGATCCGAGCGCTGCAGCGGCGCACGTCGGAGGGGGCGCTGCCGGCGGGGACAGGGGGAGAATCTCTCCCCCCCGGCTACGAACCGGTGTCACTCATTGAAGCCCTGAACGGCCCCCATCCTGCCCGTTCCGCTGCCCCGACCCTCACCCGCACTGCTCCGGCTATAGCGTCACCGGACACCGACACGGCCTCGCAGGCTGCAGAAATCCTGAACCGCTGCAACATAGAGCGCAGCTCCTCCACCAGCCTGGGCAGTAGCGGCAGCCGCAAGGGCAAGTCGGGCTCCAAGGACGACGTCAAGACTTTACGCAGCACGCCGCACGCCCTCACTCCGGAGTTCCGCATGTCGGTGCTGCTGGCTCGCGAGGAGGAGGCCAAGCGCGCCGACGAGAAGACGGCGGCCAGCAGCCCGCTGCTCCACGACCACAAGCTCATGAACGGCGAGAACAAGTTCCCGTCGTCTCCCGATATGGAGTGCGGGGCGGAGGCGTCGTGCTCGGAGCAGACGGGGGCGGAGCCCGACGCCGACGCCGAGAGACTCTCCCCCCTGCTCACACACACTCTCAACAACATAAGAAAGCCGGTGGTGTCCCGAGCCTGCAGCGTGTCGAGTCTGGGCGCGGCTCCCGCGGACCCCGCCGGGGACTCCGCCCTCCGACTCTCCGCGCCCGCGCTCGCGCACATCGACGACATCGAGGAGCCGCACTTACGGTCTGACGGGGCGGAGTCTCCGGCGCCGGCCGAGGACTCGGACTATTTCACGCCGGAGGACACGACCACCACGATACTGACCCTACCCAAAGCCGCCAAGCATCTAGAACCGCTGAACAACGGCGAGTGTACGCCACAACGCTGGGCGCTGCCGCACCACGTAACATCTTTACCAGGCACACCACTAAGCCAGTCCAGCGTCCGATCGTCAGGCGAGTCATATAGCTCCACCTCATCCACTCGACAACTGTTGACGGCTCCTCCGCCGCGCGCTTGTTAA

Protein

MGVLASRQNPGLEDADIISNHAYKYPPRSGNYFGSHFIMGGERFDTPQPEAYLFGENADLNFLGSRPTPFPYPPPQSNEPTKTLKSLVNIRKESLRFIRCPEPLSKLADNQIGDGVMKSPESNGKGTYYNIEFTFDCDARCAITVHYFCTEEVTPAGVVYYPRDPTMSSQTYHYKKGANQQFCQISHVFDPSKYSEEDLLYNADKELIPIAIYCVVDEGQDEIRQSHTTIAVVEKHSDGTYVLKALKQKLFVDGLCYLLQEIYGIENKNLDSKPTSDSETEEGGSECVICMCDTRDTLILPCRHLCLCNSCADSLRYQANNCPICRAPFRALLQIRALQRRTSEGALPAGTGGESLPPGYEPVSLIEALNGPHPARSAAPTLTRTAPAIASPDTDTASQAAEILNRCNIERSSSTSLGSSGSRKGKSGSKDDVKTLRSTPHALTPEFRMSVLLAREEEAKRADEKTAASSPLLHDHKLMNGENKFPSSPDMECGAEASCSEQTGAEPDADAERLSPLLTHTLNNIRKPVVSRACSVSSLGAAPADPAGDSALRLSAPALAHIDDIEEPHLRSDGAESPAPAEDSDYFTPEDTTTTILTLPKAAKHLEPLNNGECTPQRWALPHHVTSLPGTPLSQSSVRSSGESYSSTSSTRQLLTAPPPRAC

Uniprot

H9J058   A0A2H1WLS1   A0A194Q3N3   A0A194QSL6   A0A2A4J2G1   A0A2A4J335   + More
A0A212FCD7   A0A2A4J1G7   A0A2J7Q8J2   A0A2J7Q8J6   A0A0M9A3X0   A0A2A3E1L6   A0A087ZQ52   A0A1B6LW03   K7IRM3   A0A151JTP6   A0A232EHC3   F4W3Y1   A0A0L7RHF0   A0A158NTD1   A0A026WFQ3   A0A1B6EL04   A0A1B6HDA0   E2BS52   A0A0C9QTU0   A0A151IX19   A0A2J7Q8K4   E2AHV4   D6X1Y1   A0A151X5E1   A0A3L8D8Y7   A0A195CJY1   A0A0K8TL32   A0A1Y1MEF6   E0VTF5   A0A195B3T5   A0A1B6C5Y4   A0A1B6E1R7   A0A0A9WSF0   A0A1B0CMR4   A0A0A9WJ14   A0A0A9WSF3   A0A1L8DSQ0   A0A0A9WK30   U4U9E6   N6TZJ8   A0A1S4G844   T1HR97   A0A2J7Q8K6   A0A1B6DF61   E9I9Q1  

Pubmed

19121390    26354079    22118469    20075255    28648823    21719571    + More
21347285    24508170    20798317    18362917    19820115    30249741    26369729    28004739    20566863    25401762    23537049    17510324    21282665   

EMBL

BABH01018977    BABH01018978    BABH01018979    BABH01018980    ODYU01009515    SOQ54009.1    + More
KQ459472    KPJ00148.1    KQ461175    KPJ07975.1    NWSH01003683    PCG65926.1    PCG65924.1    AGBW02009199    OWR51405.1    PCG65925.1    NEVH01016952    PNF24911.1    PNF24908.1    KQ435756    KOX75946.1    KZ288507    PBC25146.1    GEBQ01012114    JAT27863.1    KQ981885    KYN33857.1    NNAY01004555    OXU17712.1    GL887491    EGI70977.1    KQ414592    KOC70228.1    ADTU01025841    KK107263    EZA53854.1    GECZ01031207    GECZ01008746    JAS38562.1    JAS61023.1    GECU01035101    JAS72605.1    GL450151    EFN81444.1    GBYB01004102    JAG73869.1    KQ980837    KYN12350.1    PNF24909.1    GL439592    EFN66991.1    KQ971371    EFA10182.1    KQ982519    KYQ55478.1    QOIP01000011    RLU16985.1    KQ977642    KYN01036.1    GDAI01002554    JAI15049.1    GEZM01033628    JAV84209.1    DS235763    EEB16661.1    KQ976625    KYM78935.1    GEDC01028380    JAS08918.1    GEDC01005428    JAS31870.1    GBHO01035834    GBRD01013084    JAG07770.1    JAG52742.1    AJWK01019121    GBHO01035830    GBHO01035826    JAG07774.1    JAG07778.1    GBHO01035829    GBRD01013085    JAG07775.1    JAG52741.1    GFDF01004586    JAV09498.1    GBHO01035828    GBRD01013083    JAG07776.1    JAG52743.1    KB631924    ERL87236.1    APGK01055044    KB741259    ENN71682.1    ACPB03000492    PNF24912.1    GEDC01012960    JAS24338.1    GL761846    EFZ22720.1   

Proteomes

UP000005204    UP000053268    UP000053240    UP000218220    UP000007151    UP000235965    + More
UP000053105    UP000242457    UP000005203    UP000002358    UP000078541    UP000215335    UP000007755    UP000053825    UP000005205    UP000053097    UP000008237    UP000078492    UP000000311    UP000007266    UP000075809    UP000279307    UP000078542    UP000009046    UP000078540    UP000092461    UP000030742    UP000019118    UP000015103   

PRIDE

H9J058   

Interpro

IPR013083   Znf_RING/FYVE/PHD        + More
IPR001841   Znf_RING       

Gene 3D

3.30.40.10    

ProteinModelPortal

H9J058   A0A2H1WLS1   A0A194Q3N3   A0A194QSL6   A0A2A4J2G1   A0A2A4J335   + More
A0A212FCD7   A0A2A4J1G7   A0A2J7Q8J2   A0A2J7Q8J6   A0A0M9A3X0   A0A2A3E1L6   A0A087ZQ52   A0A1B6LW03   K7IRM3   A0A151JTP6   A0A232EHC3   F4W3Y1   A0A0L7RHF0   A0A158NTD1   A0A026WFQ3   A0A1B6EL04   A0A1B6HDA0   E2BS52   A0A0C9QTU0   A0A151IX19   A0A2J7Q8K4   E2AHV4   D6X1Y1   A0A151X5E1   A0A3L8D8Y7   A0A195CJY1   A0A0K8TL32   A0A1Y1MEF6   E0VTF5   A0A195B3T5   A0A1B6C5Y4   A0A1B6E1R7   A0A0A9WSF0   A0A1B0CMR4   A0A0A9WJ14   A0A0A9WSF3   A0A1L8DSQ0   A0A0A9WK30   U4U9E6   N6TZJ8   A0A1S4G844   T1HR97   A0A2J7Q8K6   A0A1B6DF61   E9I9Q1  

PDB

3T6P     E-value=0.00167954,     Score=100

KEGG

101739623    no KO assigned | (RefSeq) E3 ubiquitin-protein ligase MGRN1

GO

GO:0061630   GO:0005737   GO:0016567   GO:0016874   GO:0005515   GO:0008270   GO:0008026   GO:0004386   GO:0006508   GO:0005622   GO:0007264   GO:0016597  

Length:

663

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00041

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00024

outside

1  -  663

 

 

Pi

22.836695

Theta

20.877188

Tajima's D

0.276116

CLR

1.021062

CSRT

0.452427378631068

Interpretation

Uncertain