Gene

KWMTBOMO05975  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA002894

Annotation

GTP-binding_protein_1_[Papilio_xuthus]

Location

Bomo_Chr10(-):15669338-15673767      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.497

CDS

ATGTTCCTGAACCTATTGAAGACGAGGATGCCCTCGCACGAAGACAAGCCAGCCGAATTCCAGATAGACGACACATACTCCGTGCCGGGCGTGGGTACGGTGGTGTCGGGCACGGCGCTGGCGGGCGTGGTGCGCGCGGGCGACACGCTGGCGCTGGGCCCGGACGCGCTGGGCCGCTTCCACCCCGTCGCCGTCAAGTCCATCCACCGCAAGCGCATGCCGGTGCACGAGGTGCGCGGCGGACAGACGGCCAGCTTCGCGCTTAAGAAGGTGAAGCGTTCTCAAATCCGCAAGGGCATGGTGATGGTCTCTCCGTCGCTGAACCCTCAGGCGTGCTGGCAGTTCGAGGGGGAGATCCTCGTGCTGCACCACCCGACCACCATCTCCTCGCGTTACCAAGCCATGGTGCACTGCGGCAGTATCAGACAGACAGCATCCATATTGTCGATGTCCAGGGACTGCCTTCGGACCGGGGACAAAGCTTTAGTCAAGTTCCGCTTCATCAAACATCCGGAGTATCTCAAGAGGGGACAGAGAATGGTGTTCCGTGAGGGTCGTACAAAAGCCGTGGGCAACGTGCTACGTCCGGAGCCGATGTCGCTGAAGCCCGCCCGGCACGACCGCCGGAACCCGCAGCACAACAACCACGCAGCCGATGAGAGTGATTCGCAGCACGTGCAAGAGAGCGACGTGACTGCAATGGACTCTCCGTTCGAGATCCAAGCGGACAAGCGCGTCCAAGGCGGAGGGGCGGGAGGGGGGCGTCGTGGTCGGAAGAGACACGACAAGCCGCCCGAACCCACACAACCGACCGTCGCTGCGGCTAATTAA

Protein

MFLNLLKTRMPSHEDKPAEFQIDDTYSVPGVGTVVSGTALAGVVRAGDTLALGPDALGRFHPVAVKSIHRKRMPVHEVRGGQTASFALKKVKRSQIRKGMVMVSPSLNPQACWQFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSMSRDCLRTGDKALVKFRFIKHPEYLKRGQRMVFREGRTKAVGNVLRPEPMSLKPARHDRRNPQHNNHAADESDSQHVQESDVTAMDSPFEIQADKRVQGGGAGGGRRGRKRHDKPPEPTQPTVAAAN

Uniprot

H9J059   A0A0N1PFW1   A0A2A4J8J3   A0A194QR39   A0A194Q3N7   A0A0L7RGX9   + More
A0A154P339   E2B9X0   K7IRM0   A0A3L8DA37   A0A0N0BHA2   A0A026WDU7   A0A1B6G1C6   A0A310SQ58   V9ICL1   A0A087ZQ35   A0A2A3E0S5   E2AT39   A0A0C9S099   E9I9K4   A0A151JPI4   F4W9Y8   A0A232EF70   A0A067QRF3   A0A151I5T8   A0A1B6MMP3   A0A151JU39   A0A336M7T6   A0A151X1D2   A0A158NTC6   A0A212FCG4   A0A151IPM6   A0A1Y1JU13   W8BM14   U4UNH6   N6TV08   A0A1Y1JR16   V5GHZ3   A0A146M6Y5   A0A1L8DS58   A0A1L8DS44   A0A1B6CKT1   A0A0A1WT86   D6X1X8   E0VCV1   A0A2P8YJR4   A0A0K8TRU4   A0A034WU37   A0A161MIK5   A0A1B0C274   A0A1A9YD13   A0A0K8U795   T1PGX4   A0A1I8N4I0   A0A1W4XCJ5   A0A0A1XH05   D3TL06   A0A1I8Q935   A0A1B0GBU0   A0A1A9Z7L5   A0A1A9VJ01   A0A1A9WQP9   A0A1B0CFP0   A0A0A9XRM5   A0A0V0G492   A0A0P4VW78   A0A224XL22   A0A023F5K2   A0A069DZE2   A0A1J1HK92   T1HQL4   A0A2S2Q4X2   J9JW71   A0A2S2NKW1   D5AEL6   Q0E931   Q8MS03   A0A2H8TN13   A0A2S2Q811   A0A0P5VZ77   B4P4Q4   B3NLQ6   A0A0J9U551   A0A2L2Y266   B4HND4   Q9U9K4   A0A1W4UKY1   A0A0M5IZG6   B3MBE5   A0A2R5LMY7   A0A0T6AWV7   A0A087UI88   A0A0N7ZTI2   H3A486   E9H1C7   A0A293LJ83   A0A0N8CV63  

Pubmed

19121390    26354079    20798317    20075255    30249741    24508170    + More
21282665    21719571    28648823    24845553    21347285    22118469    28004739    24495485    23537049    26823975    25830018    18362917    19820115    20566863    29403074    26369729    25348373    25315136    20353571    25401762    27129103    25474469    26334808    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17994087    17550304    18057021    22936249    26561354    9215903    21292972   

EMBL

BABH01018980    KQ459221    KPJ02837.1    NWSH01002488    PCG68189.1    KQ461175    + More
KPJ07973.1    KQ459472    KPJ00147.1    KQ414592    KOC70232.1    KQ434809    KZC06242.1    GL446605    EFN87557.1    QOIP01000011    RLU16983.1    KQ435756    KOX75942.1    KK107263    EZA53856.1    GECZ01013535    JAS56234.1    KQ761155    OAD58181.1    JR038760    AEY58397.1    KZ288507    PBC25144.1    GL442489    EFN63393.1    GBYB01013935    GBYB01013936    JAG83702.1    JAG83703.1    GL761846    EFZ22690.1    KQ978719    KYN29044.1    GL888034    EGI68989.1    NNAY01005096    OXU17005.1    KK853027    KDR12295.1    KQ976412    KYM90523.1    GEBQ01002796    JAT37181.1    KQ981885    KYN33844.1    UFQT01000669    SSX26336.1    KQ982585    KYQ54178.1    ADTU01025819    ADTU01025820    AGBW02009199    OWR51407.1    KQ976832    KYN07987.1    GEZM01103017    GEZM01103015    JAV51618.1    GAMC01015857    GAMC01015856    JAB90699.1    KB632291    ERL91570.1    APGK01017301    APGK01017302    APGK01017303    APGK01017304    APGK01017305    KB740006    ENN81908.1    GEZM01103018    GEZM01103016    JAV51612.1    GALX01004802    JAB63664.1    GDHC01017151    GDHC01004113    JAQ01478.1    JAQ14516.1    GFDF01004792    JAV09292.1    GFDF01004791    JAV09293.1    GEDC01023231    JAS14067.1    GBXI01012644    JAD01648.1    KQ971371    EFA10181.1    DS235065    EEB11207.1    PYGN01000545    PSN44488.1    GDAI01000521    JAI17082.1    GAKP01001095    JAC57857.1    GEMB01001657    JAS01506.1    JXJN01024376    GDHF01029787    JAI22527.1    KA647138    AFP61767.1    GBXI01004061    GBXI01001561    JAD10231.1    JAD12731.1    EZ422096    ADD18301.1    CCAG010005890    AJWK01010210    AJWK01010211    GBHO01021318    GBHO01021317    GBRD01017283    GDHC01019695    GDHC01007877    JAG22286.1    JAG22287.1    JAG48544.1    JAP98933.1    JAQ10752.1    GECL01003286    JAP02838.1    GDKW01001650    JAI54945.1    GFTR01007583    JAW08843.1    GBBI01002267    JAC16445.1    GBGD01000795    JAC88094.1    CVRI01000008    CRK88471.1    ACPB03000491    GGMS01003600    MBY72803.1    ABLF02028980    GGMR01005158    MBY17777.1    BT124753    ADF28794.1    AE013599    BT133046    AAF57733.1    AAM68183.1    AEX93132.1    AY119172    AAM51032.1    GFXV01003762    MBW15567.1    GGMS01004680    MBY73883.1    GDIP01093141    JAM10574.1    CM000158    EDW91677.1    KRK00020.1    CH954179    EDV55031.1    KQS62072.1    CM002911    KMY94784.1    KMY94785.1    IAAA01004132    IAAA01004133    IAAA01004134    IAAA01004135    LAA02266.1    CH480816    EDW48416.1    AF165153    AAD51291.1    CP012524    ALC40574.1    CH902619    EDV36070.1    KPU75955.1    GGLE01006531    MBY10657.1    LJIG01022631    KRT79538.1    KK119923    KFM77077.1    GDIP01214081    JAJ09321.1    AFYH01055767    AFYH01055768    AFYH01055769    AFYH01055770    GL732583    EFX74441.1    GFWV01003814    MAA28544.1    GDIP01095743    JAM07972.1   

Proteomes

UP000005204    UP000053268    UP000218220    UP000053240    UP000053825    UP000076502    + More
UP000008237    UP000002358    UP000279307    UP000053105    UP000053097    UP000005203    UP000242457    UP000000311    UP000078492    UP000007755    UP000215335    UP000027135    UP000078540    UP000078541    UP000075809    UP000005205    UP000007151    UP000078542    UP000030742    UP000019118    UP000007266    UP000009046    UP000245037    UP000092460    UP000092443    UP000095301    UP000192223    UP000095300    UP000092444    UP000092445    UP000078200    UP000091820    UP000092461    UP000183832    UP000015103    UP000007819    UP000000803    UP000002282    UP000008711    UP000001292    UP000192221    UP000092553    UP000007801    UP000054359    UP000008672    UP000000305   

PRIDE

H9J059    Q0E931    Q8MS03    Q9U9K4   

Pfam

PF00009   GTP_EFTU        + More
PF03143   GTP_EFTU_D3
PF03144   GTP_EFTU_D2
PF12017   Tnp_P_element
PF05485   THAP

Interpro

IPR009001   Transl_elong_EF1A/Init_IF2_C        + More
IPR000795   TF_GTP-bd_dom       
IPR039263   GTPB1       
IPR027417   P-loop_NTPase       
IPR009000   Transl_B-barrel_sf       
IPR035531   GTPBP1-like       
IPR004160   Transl_elong_EFTu/EF1A_C       
IPR004161   EFTu-like_2       
IPR006612   THAP_Znf       
IPR021896   Transposase_37       
IPR038441   THAP_Znf_sf       

SUPFAM

SSF52540   SSF52540        + More
SSF50465   SSF50465       
SSF50447   SSF50447       

Gene 3D

3.30.40.180    

CDD

cd04165  GTPBP1_like

ProteinModelPortal

H9J059   A0A0N1PFW1   A0A2A4J8J3   A0A194QR39   A0A194Q3N7   A0A0L7RGX9   + More
A0A154P339   E2B9X0   K7IRM0   A0A3L8DA37   A0A0N0BHA2   A0A026WDU7   A0A1B6G1C6   A0A310SQ58   V9ICL1   A0A087ZQ35   A0A2A3E0S5   E2AT39   A0A0C9S099   E9I9K4   A0A151JPI4   F4W9Y8   A0A232EF70   A0A067QRF3   A0A151I5T8   A0A1B6MMP3   A0A151JU39   A0A336M7T6   A0A151X1D2   A0A158NTC6   A0A212FCG4   A0A151IPM6   A0A1Y1JU13   W8BM14   U4UNH6   N6TV08   A0A1Y1JR16   V5GHZ3   A0A146M6Y5   A0A1L8DS58   A0A1L8DS44   A0A1B6CKT1   A0A0A1WT86   D6X1X8   E0VCV1   A0A2P8YJR4   A0A0K8TRU4   A0A034WU37   A0A161MIK5   A0A1B0C274   A0A1A9YD13   A0A0K8U795   T1PGX4   A0A1I8N4I0   A0A1W4XCJ5   A0A0A1XH05   D3TL06   A0A1I8Q935   A0A1B0GBU0   A0A1A9Z7L5   A0A1A9VJ01   A0A1A9WQP9   A0A1B0CFP0   A0A0A9XRM5   A0A0V0G492   A0A0P4VW78   A0A224XL22   A0A023F5K2   A0A069DZE2   A0A1J1HK92   T1HQL4   A0A2S2Q4X2   J9JW71   A0A2S2NKW1   D5AEL6   Q0E931   Q8MS03   A0A2H8TN13   A0A2S2Q811   A0A0P5VZ77   B4P4Q4   B3NLQ6   A0A0J9U551   A0A2L2Y266   B4HND4   Q9U9K4   A0A1W4UKY1   A0A0M5IZG6   B3MBE5   A0A2R5LMY7   A0A0T6AWV7   A0A087UI88   A0A0N7ZTI2   H3A486   E9H1C7   A0A293LJ83   A0A0N8CV63  

PDB

1SKQ     E-value=3.07999e-08,     Score=137

KEGG

101740168    no KO assigned | (RefSeq) GTP-binding protein 1

GO

GO:0005525   GO:0003924   GO:0003746   GO:0006414   GO:0003677   GO:0004803   GO:0006313   GO:0016592   GO:0008026   GO:0004386   GO:0008270   GO:0006508   GO:0005622   GO:0007264   GO:0016597  

PANTHER

PTHR43721:SF9  

Length:

276

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.11397

Exp number, first 60 AAs:

0.11376

Total prob of N-in:

0.02447

outside

1  -  276

 

 

Pi

6.040632

Theta

12.690288

Tajima's D

-0.622826

CLR

2.867554

CSRT

0.214139293035348

Interpretation

Uncertain