SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO05970
Pre Gene Modal
BGIBMGA002897
Annotation
PREDICTED:_protein_melted_isoform_X1_[Bombyx_mori]
Location
Bomo_Chr10(-):15626277-15639507      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 2.493
 

Sequence

CDS
ATGCATGAACTCTTGAAGCACGTACTGACCGAAAGGGACCTTACGAGAGCTGGCGATATTTTTGCTATACCGGATTCTGAGATTGTTGACGATCTAAATGAAGTGTTAAAACAAATAACAGAAGTCTCATCCCGACCTGATTACGTCCGCAACGACAGGGATCAGGCCCTCATAGAGATATGCGTGACGCGAGTTACGTCATGTATCAAGGAGACAGGAACATTGGACAAATACTGCGCAGCTCTAGTGGCACTATTGGAGTCATGCCTGCACCATAACTTGATGCCATTAGGGCATTTAAGAGATGATGATCCACCTCATGCAAAGATTGCTTCTGATGTCATTGCTTGCATTGTATTGGTATCGTTTCCACTTCAATCGGACACGGAAAACTATGGCAACAAGAATGTAATGGAGCTGTTCCTCCCCGTCGCAGTACAGTTCCTGCATAAAGGCAATCGGGAGATATCCAGGCACATGGCTCGATATCTGTCATTAGCCGCTGTACATCATGCAGTGCTACTCAAGCCTCACGTTCAAACGATTATGGACTCTATAATGTCCGGTAACTATCCTCTGTGCCGAATACTAACGAATCTATACGAAGTATCCCCCGAGCCGCTGGAGGGTCACGCGACCGCGCTGGTGTCGCTGCTCCCCCACGCGGAACAAGTCGAGAAGAACTCGCTGTTCGCGCTGTTCGAGCTGATCGCCGCGCGCAAGCCCGACGCCCTGCGGACCTGCGTGCCCCAGCTGCTGTCCTACCTGTGCCCCAGCACCGCCCGCCCCGACGAGCCCGGCTGCATGTGTGTGGACATCGTGCAGGTGATGGCGTGCGTGAGCCGCAGTCGCGCGTCGCTGCTGAGCGAGCAGGGGCCCGCCCTGGCGCGCGCCGCCGCCCCCCCGCACGCCCCGCCCCGCCTCGTCGCGCTCGTCGCCGCGCTGCTCACGCGCATCGGCTACACGCACCGGGAGCGAGCTCAAGAAGCCCTGAACTTCATACTGGAGAAGCTGTCGACTGCGGACCGCGCGCAGCAGGCGGTGCTCATGAGGGAGGCCACGTCGCTCTGCAGCGCATTCCCCGCTCTGTTCACCGACAAACTGCTCACCGCCGTCAGGGCCAATAATACCACTCGTCCTAAATCAGCGATATCTCACAGTGAAGTCAACCGTACATCAGGCGGTGTTACCATCGTCAAACTGGGGGGACCGCAGAGTGCCCCCGCGCCGCCCCCCCCGGTGACACCTGCGCCCCCCGCCGCCACCCCGGCGCCCCCCGCGGCCGGGTACACGCGGCGCGCCAAGCTCGGGGACTCGCGCAGTACTGGACGACTGCACCCAGGACCCAACTCACATCGAAGCATGACCAGACTGAATGTAGCGGGCGGCTCGGTCGGAGGACTCCACAAGAGCATGACCCGGTTGTCGTCGTCGCAGCAGATCAACTTGCAGCAGCAGAACAGCGCCAGCAGCACCGTCACGACGAACGGCAAGCCCGGTGTGTGCACGTCCAGCGTTGCGGCCAACAAGACTGCCAACACTCCCAGACAACACCACCATCACAATATCGTTATCGGAGCTCCACCTAACACGACAAACGGTCCAACGATCATCACTAATCCACCGCACCAACCGCAATCGATATCGGTAAACCCGCTCACCGGAAAATCTTCCGACGCTCTCACTCCGTCCGTATCGATCCAGCACTCGAACAATGCACTGGGCCACGTTTCCATCATCACCTCCACGGCCAATTCCCCGCCGTGCTCCAACCCTAATTCTATATCGATAACCGGACCGGTGACCGTGACGTCACGCCGCGCGAACAACACTAGTGTGACCATGATCAACGGAGCGAACAACACGGACAATTCAAACCACAGGATCAGCGTATTTGAGCCGTACCCGATGCGCGACACCGTCCAGCACTTCTGCGAGAAGCATTTGGACAAGATCAAAGCTTACATGGATAATGTTTCGCTGAGGCTGCCGCCGCCCGCCAAGTGTACTATCGAAGAGCGGCGCTCGAAGAAGCACGCGCGGCTGTCGTTCGCGTGCGGCGGGCGCGGCGCGCACTGCCTGTTCTCTGCGGCGCCGTTCTGCGTGCGCACCCGCGCGCCCCGCGTGTGGGTGCACCTCATGTTCCTGGCGCTGCAGGCCCGCCACGCCGCGGCGCTGTCCTCGCGCGACCCCACGCTGGCCAGCCTCAAGCACTGCTGGGACATCCTCAAGTGCGAGAACAAGACCTTCCTCACGCTGGTCACGGGCGCCTTCCCGCCGCTCAAGGACCAGGACTTGCTGGTGGACGAGCTGCGGGCCGCCGGCTTCTTCGACGTGTTCGAGCGGGACTCCCGCGGCGCCTGGGGCTGCTTCCTGTGCACGCGGCCCGAGCGCGCGCTGCCCTTCCTGTCGCCCTGCGCCGCGCCCGTCATCGAGGGCACGCTCAAGGAGAAGAAGGGCCGCTGGAGGATCTTCCGTCGCTGGCGCACCAGGTACTTCACGCTCTCCGGCGCCCACCTCTCCTGCAAGGGATCTAGCGGCGGCGAAAGTATCGACATCAATCAGATCCGGTCCGTGAAGGTGTCGCGCGGCGCCCGCAACATCCCGAAGGCGTTCGAGATATTCACCGGGGACCAGACGCTGATCCTGAAGCCGAAGGACGGCAAGAACGCCGAGGAGTGGGTGCAGTGCCTCAGCATCGCGCTGGCGCACTCGCACGCGCGCGACGCGCCCGCCAAGGCCAACAGCCTTCCCGCCAGGGGCGTCACGCTCAAGAGCTTCTAA
Protein
MHELLKHVLTERDLTRAGDIFAIPDSEIVDDLNEVLKQITEVSSRPDYVRNDRDQALIEICVTRVTSCIKETGTLDKYCAALVALLESCLHHNLMPLGHLRDDDPPHAKIASDVIACIVLVSFPLQSDTENYGNKNVMELFLPVAVQFLHKGNREISRHMARYLSLAAVHHAVLLKPHVQTIMDSIMSGNYPLCRILTNLYEVSPEPLEGHATALVSLLPHAEQVEKNSLFALFELIAARKPDALRTCVPQLLSYLCPSTARPDEPGCMCVDIVQVMACVSRSRASLLSEQGPALARAAAPPHAPPRLVALVAALLTRIGYTHRERAQEALNFILEKLSTADRAQQAVLMREATSLCSAFPALFTDKLLTAVRANNTTRPKSAISHSEVNRTSGGVTIVKLGGPQSAPAPPPPVTPAPPAATPAPPAAGYTRRAKLGDSRSTGRLHPGPNSHRSMTRLNVAGGSVGGLHKSMTRLSSSQQINLQQQNSASSTVTTNGKPGVCTSSVAANKTANTPRQHHHHNIVIGAPPNTTNGPTIITNPPHQPQSISVNPLTGKSSDALTPSVSIQHSNNALGHVSIITSTANSPPCSNPNSISITGPVTVTSRRANNTSVTMINGANNTDNSNHRISVFEPYPMRDTVQHFCEKHLDKIKAYMDNVSLRLPPPAKCTIEERRSKKHARLSFACGGRGAHCLFSAAPFCVRTRAPRVWVHLMFLALQARHAAALSSRDPTLASLKHCWDILKCENKTFLTLVTGAFPPLKDQDLLVDELRAAGFFDVFERDSRGAWGCFLCTRPERALPFLSPCAAPVIEGTLKEKKGRWRIFRRWRTRYFTLSGAHLSCKGSSGGESIDINQIRSVKVSRGARNIPKAFEIFTGDQTLILKPKDGKNAEEWVQCLSIALAHSHARDAPAKANSLPARGVTLKSF

Summary

Uniprot
H9J062   A0A2A4J9U6   A0A194Q561   A0A3S2NS48   A0A212EIW9   A0A1Y1JZ38   + More
A0A2S2Q6N9   A0A146KRZ0   D6WDX4   A0A139WL03   A0A2S2NS82  
Pubmed
19121390    26354079    22118469    28004739    26823975    18362917    + More
19820115   
EMBL
BABH01018981    BABH01018982    NWSH01002488    PCG68192.1    KQ459472    KPJ00140.1    + More
RSAL01000002    RVE54982.1    AGBW02014561    OWR41418.1    GEZM01101818    GEZM01101816    JAV52276.1    GGMS01004195    MBY73398.1    GDHC01019366    JAP99262.1    KQ971323    EEZ99906.2    KYB28564.1    GGMR01007395    MBY20014.1   
Proteomes
UP000005204    UP000218220    UP000053268    UP000283053    UP000007151    UP000007266    + More
PRIDE
H9J062   
Pfam
PF00169   PH
Interpro
IPR016024   ARM-type_fold        + More
IPR001849   PH_domain       
IPR039888   Melted-like       
IPR011993   PH-like_dom_sf       
SUPFAM
SSF48371   SSF48371       
Gene 3D
2.30.29.30    
ProteinModelPortal
H9J062   A0A2A4J9U6   A0A194Q561   A0A3S2NS48   A0A212EIW9   A0A1Y1JZ38   + More
A0A2S2Q6N9   A0A146KRZ0   D6WDX4   A0A139WL03   A0A2S2NS82  

Ontologies

KEGG
101738641    no KO assigned | (RefSeq) protein melted
GO
GO:0005488   GO:0008138   GO:0016311   GO:0016791   GO:0004725   GO:0006508   GO:0005622   GO:0007264   GO:0008026   GO:0016597  
PANTHER
PTHR21630  

Topology

Length:
927
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01145
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00047
outside
1  -  927
 
 

Population Genetic Test Statistics

Pi
3.785778
Theta
14.555426
Tajima's D
-0.709126
CLR
0.82491
CSRT
0.1996400179991
Interpretation
Uncertain
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