Gene

KWMTBOMO05969

Pre Gene Modal

BGIBMGA002807

Annotation

PREDICTED:_dual_specificity_protein_phosphatase_19-like_[Plutella_xylostella]

Location

Bomo_Chr10(+):15617698-15618429      View in EpiBrowser

Full name

tRNA pseudouridine synthase      

Location in the cell

Cytoplasmic   Reliability : 2.945

CDS

ATGAGTTTTGCGGACCAGTTACAGAAGCAAAAAATGAAGCTAAAAGGAACAGATACGATTATAACAAATGCCGACGGACAAAGGTATATAGAAAGCAAAACCAATGAGAAAATAGTCCTCAGCCCCAACGCGTACGGCTTTGTCGTAGACAATAAACCTGACAATACGCCCGCGTTGATCACAGAACATCTATACGTAGGGTCGCAGGATTGCACCGCCGAGAACGTGCTAGTGCAGCACGACATCAGGCACGTGTTAAGTTTAGGCGTCAAAGTACCACTGAAAATCGATTATAAATATATCGATTGTCTCGATTTACCGGAAATCGATGTGAGACCTTTACTCGGGAAGAGCCTGCCGTATCTGCGTGACTGCGTGCTCTTGAAACAGAATGTTCTTGTGCATTGTAATGCGGGTGTGTCTAGGACTTCGACTGTGGCTATAGGATATCTGATGCAATATGAGAATATGAGTTTCGACGAAGCGCACAAACTCGTGAAGACGAAAAGACCAGCTGTAAGACCAAACGATGGGTTTAGGAAGCAATTGGAGCAACTGAAACCTGGTGAATTGATTTAA

Protein

MSFADQLQKQKMKLKGTDTIITNADGQRYIESKTNEKIVLSPNAYGFVVDNKPDNTPALITEHLYVGSQDCTAENVLVQHDIRHVLSLGVKVPLKIDYKYIDCLDLPEIDVRPLLGKSLPYLRDCVLLKQNVLVHCNAGVSRTSTVAIGYLMQYENMSFDEAHKLVKTKRPAVRPNDGFRKQLEQLKPGELI

Catalytic Activity

tRNA uridine(38-40) = tRNA pseudouridine(38-40)

Similarity

Belongs to the tRNA pseudouridine synthase TruA family.
Belongs to the protein-tyrosine phosphatase family. Non-receptor class dual specificity subfamily.

Uniprot

H9IZX2   A0A2A4J9M2   A0A0L7KM53   A0A212EIV9   A0A194Q466   A0A1W4XPB0   + More
U4U7E1   A0A1Y1L491   A0A336LWW1   A0A1I8PYJ2   A0A1I8MQA6   A0A0K8TL22   A0A182JTT6   A0A182PTD3   A0A2M4CHD8   B0WVR9   W8B0N1   A0A1S4JXH1   A0A182MJE1   A0A182U639   A0A182W910   A0A182STZ3   A0A182NAS1   Q7Q194   A0A182YMT0   A0A182F3V6   A0A182UUY2   A0A182IRN8   B0EMM3   A0A0J9RLE3   A0A084W8M8   A0A1I8PYL7   N9TGI6   M2RPE0   M7W8J9   M3UP75   C4LU68   A0A1A9VMW8   A0A0A1TZG0   A0A034VU68   B3M6R0   Q9NGL1   A0A0L0CTH0   A0A1W4W0W6   A0A0Q5U2R2   N6TSM3   A0A0Q9WHB0   A0A3B0JRN0   B4HVB8   A0A0M4EZE5   A0A1A9YN28   B4QKT6   A0A0R3P601   A0A0Q9XRC2   A0A0R1DTX5   A0A1B0BAB6   W5JVG1   K2H941   A0A182Q2J5   A0A1B6FUE0   A0A026WK03   Q17EU5   A0A1L8DN10   A0A0A1WY72   A0A182GSG5   B4J2A2   A0A0Q9X2V3   A0A1B6IDP5   B4H5I1   A0A1B0D3R1   A0A088APU0   A0A2A3EIE1   A0A0M8ZPX2   C3ZYC6   A0A2S2NZS3   A0A182RR77   A0A2S2QIK4   E9ISP9   A0A0L7R7H2   A0A2R7WKZ7   A0A3B4BA75   A0A2J7PQ24   A0A2R5LGN0   A0A2L2YQL6   A0A195EUF4   A0A0V1MBT0   A0A0V1I365   E2AYB1   A0A154PED4   A0A158NQY8   A0A087U018   A0A0V1I264   A0A0N7ZAC8   A0A1Y2ESZ2   A0A067RP10   A0A1Y3NNB4   A0A3M6UD53   H3AGV5   A0A0V0Z9K1   A0A3P8WKP0  

EC Number

5.4.99.-

Pubmed

19121390    26227816    22118469    26354079    23537049    28004739    + More
25315136    26369729    24495485    12364791    25244985    22936249    24438588    15729342    25348373    17994087    10903144    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    26108605    15632085    17550304    20920257    23761445    24508170    30249741    17510324    25830018    26483478    18563158    21282665    25463417    26561354    20798317    21347285    24845553    30382153    9215903    24487278   

EMBL

BABH01018982    NWSH01002508    PCG68112.1    JTDY01009018    KOB64195.1    AGBW02014561    + More
OWR41419.1    KQ459472    KPJ00139.1    KB632130    ERL88977.1    GEZM01067000    JAV67601.1    UFQT01000257    SSX22454.1    GDAI01003013    JAI14590.1    GGFL01000393    MBW64571.1    DS232131    EDS35676.1    GAMC01011905    JAB94650.1    AXCM01008285    AAAB01008980    EAA14028.4    DS550011    EDR24213.1    CM002912    KMY96576.1    KMY96577.1    ATLV01021496    KE525319    KFB46572.1    KB823932    ENY62699.1    KB444557    EMD46395.1    KB637381    EMS16602.1    KB610510    EMH75871.1    DS571151    BDEQ01000001    EAL51641.1    GAT92140.1    KB206890    ELP86972.1    GAKP01012086    JAC46866.1    CH902618    EDV38710.1    AF250380    AE014296    BT099769    BT125937    AAF67187.1    ABI31223.1    ABI31224.1    ACV82468.1    ADX35916.1    AHN57906.1    AHN57907.1    JRES01000036    KNC34694.1    CH954178    KQS43001.1    APGK01056097    KB741274    ENN71336.1    CH940647    KRF84013.1    OUUW01000009    SPP84785.1    CH480817    EDW49883.1    CP012525    ALC44075.1    CM000363    EDX08682.1    CH379070    KRT08524.1    CH933816    KRG07666.1    CM000159    KRK00646.1    JXJN01010889    ADMH02000223    ETN67328.1    JH927941    EKE39089.1    AXCN02000660    GECZ01015949    JAS53820.1    KK107182    QOIP01000003    EZA55986.1    RLU24580.1    CH477279    EAT45006.1    GFDF01006245    JAV07839.1    GBXI01016596    GBXI01010671    JAC97695.1    JAD03621.1    JXUM01084971    KQ563470    KXJ73783.1    CH916366    EDV95961.1    CH963876    KRF98556.1    GECU01028531    GECU01022674    JAS79175.1    JAS85032.1    CH479211    EDW33033.1    AJVK01023646    KZ288232    PBC31487.1    KQ435922    KOX68685.1    GG666726    EEN42457.1    GGMR01010122    MBY22741.1    GGMS01007809    MBY77012.1    GL765434    EFZ16269.1    KQ414639    KOC66820.1    KK854971    PTY20031.1    NEVH01022641    PNF18396.1    GGLE01004492    MBY08618.1    IAAA01032011    LAA09720.1    KQ981965    KYN31878.1    JYDO01000141    KRZ69254.1    JYDP01000008    KRZ16992.1    GL443864    EFN61570.1    KQ434874    KZC09638.1    ADTU01023705    KK117525    KFM70707.1    KRZ16990.1    GDRN01100821    GDRN01100820    JAI58488.1    MCOG01000028    ORY74667.1    KK852510    KDR22355.1    KZ150764    OUM68985.1    RCHS01001803    RMX51358.1    AFYH01104317    JYDQ01000294    KRY09051.1   

Proteomes

UP000005204    UP000218220    UP000037510    UP000007151    UP000053268    UP000192223    + More
UP000030742    UP000095300    UP000095301    UP000075881    UP000075885    UP000002320    UP000075883    UP000075902    UP000075920    UP000075901    UP000075884    UP000007062    UP000076408    UP000069272    UP000075903    UP000075880    UP000008076    UP000030765    UP000001926    UP000078200    UP000007801    UP000000803    UP000037069    UP000192221    UP000008711    UP000019118    UP000008792    UP000268350    UP000001292    UP000092553    UP000092443    UP000000304    UP000001819    UP000009192    UP000002282    UP000092460    UP000000673    UP000075886    UP000053097    UP000279307    UP000008820    UP000069940    UP000249989    UP000001070    UP000007798    UP000008744    UP000092462    UP000005203    UP000242457    UP000053105    UP000001554    UP000075900    UP000053825    UP000261520    UP000235965    UP000078541    UP000054843    UP000055024    UP000000311    UP000076502    UP000005205    UP000054359    UP000193920    UP000027135    UP000195826    UP000275408    UP000008672    UP000054783    UP000265120   

PRIDE

H9IZX2    Q9NGL1   

Pfam

PF00782   DSPc        + More
PF01416   PseudoU_synth_1
PF04189   Gcd10p
PF07782   DC_STAMP
PF00076   RRM_1

Interpro

IPR000387   TYR_PHOSPHATASE_dom        + More
IPR000340   Dual-sp_phosphatase_cat-dom       
IPR020422   TYR_PHOSPHATASE_DUAL_dom       
IPR029021   Prot-tyrosine_phosphatase-like       
IPR016130   Tyr_Pase_AS       
IPR020103   PsdUridine_synth_cat_dom_sf       
IPR020097   PsdUridine_synth_TruA_a/b_dom       
IPR020095   PsdUridine_synth_TruA_C       
IPR001406   PsdUridine_synth_TruA       
IPR017423   TRM6       
IPR003595   Tyr_Pase_cat       
IPR012858   DC_STAMP-like       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR000504   RRM_dom       
IPR035585   RRM1_SRSF4-like       
IPR035979   RBD_domain_sf       
IPR020417   Atypical_DUSP       

SUPFAM

SSF52799   SSF52799        + More
SSF55120   SSF55120       
SSF54928   SSF54928       

Gene 3D

3.90.190.10     3.30.70.660     3.30.70.330    

CDD

cd00127  DSPc
cd12337  RRM1_SRSF4_like

ProteinModelPortal

H9IZX2   A0A2A4J9M2   A0A0L7KM53   A0A212EIV9   A0A194Q466   A0A1W4XPB0   + More
U4U7E1   A0A1Y1L491   A0A336LWW1   A0A1I8PYJ2   A0A1I8MQA6   A0A0K8TL22   A0A182JTT6   A0A182PTD3   A0A2M4CHD8   B0WVR9   W8B0N1   A0A1S4JXH1   A0A182MJE1   A0A182U639   A0A182W910   A0A182STZ3   A0A182NAS1   Q7Q194   A0A182YMT0   A0A182F3V6   A0A182UUY2   A0A182IRN8   B0EMM3   A0A0J9RLE3   A0A084W8M8   A0A1I8PYL7   N9TGI6   M2RPE0   M7W8J9   M3UP75   C4LU68   A0A1A9VMW8   A0A0A1TZG0   A0A034VU68   B3M6R0   Q9NGL1   A0A0L0CTH0   A0A1W4W0W6   A0A0Q5U2R2   N6TSM3   A0A0Q9WHB0   A0A3B0JRN0   B4HVB8   A0A0M4EZE5   A0A1A9YN28   B4QKT6   A0A0R3P601   A0A0Q9XRC2   A0A0R1DTX5   A0A1B0BAB6   W5JVG1   K2H941   A0A182Q2J5   A0A1B6FUE0   A0A026WK03   Q17EU5   A0A1L8DN10   A0A0A1WY72   A0A182GSG5   B4J2A2   A0A0Q9X2V3   A0A1B6IDP5   B4H5I1   A0A1B0D3R1   A0A088APU0   A0A2A3EIE1   A0A0M8ZPX2   C3ZYC6   A0A2S2NZS3   A0A182RR77   A0A2S2QIK4   E9ISP9   A0A0L7R7H2   A0A2R7WKZ7   A0A3B4BA75   A0A2J7PQ24   A0A2R5LGN0   A0A2L2YQL6   A0A195EUF4   A0A0V1MBT0   A0A0V1I365   E2AYB1   A0A154PED4   A0A158NQY8   A0A087U018   A0A0V1I264   A0A0N7ZAC8   A0A1Y2ESZ2   A0A067RP10   A0A1Y3NNB4   A0A3M6UD53   H3AGV5   A0A0V0Z9K1   A0A3P8WKP0  

PDB

4D3P     E-value=5.04978e-17,     Score=211

KEGG

101740571    K14165 atypical dual specificity phosphatase [EC:3.1.3.16 3.1.3.48] | (RefSeq) dual specificity prot

GO

GO:0004725   GO:0008138   GO:0003723   GO:0009982   GO:0001522   GO:0008033   GO:0106029   GO:0031119   GO:0031515   GO:0030488   GO:0005737   GO:0016021   GO:0016301   GO:0017017   GO:0006470   GO:0004721   GO:0008579   GO:0043405   GO:0016311   GO:0016791   GO:0006508   GO:0005622   GO:0007264   GO:0008026   GO:0016597  

PANTHER

PTHR11142   PTHR12945  

Length:

192

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.07317

Exp number, first 60 AAs:

0

Total prob of N-in:

0.11389

outside

1  -  192

 

 

Pi

18.979647

Theta

15.199894

Tajima's D

0.607848

CLR

0

CSRT

0.557622118894055

Interpretation

Uncertain