Gene

KWMTBOMO05968

Pre Gene Modal

BGIBMGA002806

Annotation

PREDICTED:_tRNA_pseudouridine_synthase-like_1_[Bombyx_mori]

Location

Bomo_Chr10(+):15612378-15617645      View in EpiBrowser

Full name

tRNA pseudouridine synthase      

Location in the cell

Cytoplasmic   Reliability : 2.37

CDS

ATGAATAGGTATTTCTTTGTCAACAACATAGGTATAATTGTGAAGCAGTGCCTCAGGGTGTCAGATAATTTTAATGCAAGGTTCAATGCCACTTCCAGGAGATACTTATATAGACTAGCAGTACTAAAAAAAGATGTAGTGATACCAGAGAATGTCTCTATAGCAAATGTCATACCTGTGGAAGAATGGAAACGGTGCCACTTCATCAGATTAGCAGAATTCGACATAGAAAAATTCAAAGAGGGAGCTAAACATTTAGAAGGCTACCACGACTTCTCGACGTTCAAGAAATTCGACAAACTACTCCAACACAAACACAACCGCAGAGAGTTGAAGAGCGTAACAATAAGGGCGGGTAAACCCGTTGTGACTGCGCACACGGAGAGCAGGGGGAGTGCATTCGATTATTGGGATATCGAATTCCACGGACGCGCTTTTGTACATAATCAGATTCGGCGTATGGTAGGCACTCTGATATCAGTAGCCATCGGCAAACTCCAGCCTGACGACGTCAAGGTTATGCTCCAGATACCATCGAAGCACTCGTGGCATTCTTTCATACAGAACTGCCCTTCGGACGGTCTATATCTTTGCGAAGTGGAATACGACCCTAAAGACCTGTTTTACGACCCCGATACTACTGTTGAAAGTGAAACACTCGTTGAATCATAA

Protein

MNRYFFVNNIGIIVKQCLRVSDNFNARFNATSRRYLYRLAVLKKDVVIPENVSIANVIPVEEWKRCHFIRLAEFDIEKFKEGAKHLEGYHDFSTFKKFDKLLQHKHNRRELKSVTIRAGKPVVTAHTESRGSAFDYWDIEFHGRAFVHNQIRRMVGTLISVAIGKLQPDDVKVMLQIPSKHSWHSFIQNCPSDGLYLCEVEYDPKDLFYDPDTTVESETLVES

Catalytic Activity

tRNA uridine(38-40) = tRNA pseudouridine(38-40)

Similarity

Belongs to the tRNA pseudouridine synthase TruA family.

Uniprot

H9IZX1   A0A194QWL7   A0A194Q466   A0A2H1VKW0   A0A2A4J818   A0A212EIV9   + More
A0A2M4BU41   A0A2M4BUX4   W5JSH5   A0A034VXN8   A0A1I8PMQ8   A0A182XJK7   A0A2J7PPY8   A0A182HRI5   A0A182KTK0   A0A0L0CQP4   A0A2J7PPY1   A0A0A1WKJ3   A0A0K8TWE1   A0A1A9W4L1   A0A0K8U6C1   A0A0A1XQU0   A0A067RRG6   Q7Q194   B4L909   A0A1I8NK07   A0A1I8M3Y7   A0A0P4VSL0   B4LCD6   A0A0P4W117   A0A1B0A2G3   A0A0M4EJA4   A0A182RR77   A0A1B0FA01   A0A1A9VMW8   A0A182GSG6   Q17EU6   A0A1B0D3R1   B4MXC6   A0A182JTT6   W8BMP8   A0A182NAS1   A0A1A9YN28   B4J2A3   B3M6Q9   A0A0P4VX88   A0A1B0BAB6   Q29EU3   N6TQ04   A0A182W910   A0A0Q5UGL2   B4H5I1   A0A3B0JRM1   A0A182F3V6   A0A182IRN8   A0A0J9RKT0   A0A084W8M8   A0A232FMS0   A0A0R1DU96   Q0E8K6   E2AYB2   A0A182U639   A0A182MJE1   A0A182PTD3   A0A151WME1   K7IPG0   A0A1W4W018   A0A1W4VNI6   A0A1W4W1J5   E9ISQ0   A0A195EVE9   A0A182UUY2   A0A146M7L6   A0A151IAD9   A0A0N5DHI8   B0WVR9   A0A1S4JXH1   A0A088APT9   J9KSS6   B4J2A2   A0A1D1V7L4   A0A158NR53   A0A195B174   A0A2H8TGN9   A0A023F0N7   A0A1D1V9U0   A0A026WIW9   A0A093HXE6   A0A2A3EJX2   M4AWN4   A0A0V0GAZ6   A0A096LSI9   K7F4A5   A0A3B3TRI5   A0A3B3WBX1   A0A336LWW1   A0A0L8FKI5  

EC Number

5.4.99.-

Pubmed

19121390    26354079    22118469    20920257    23761445    25348373    + More
20966253    26108605    25830018    24845553    12364791    17994087    25315136    26483478    17510324    24495485    15632085    23537049    22936249    24438588    28648823    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    20798317    20075255    21282665    26823975    27649274    21347285    25474469    24508170    23542700    17381049   

EMBL

BABH01018982    BABH01018983    KQ461175    KPJ07966.1    KQ459472    KPJ00139.1    + More
ODYU01003117    SOQ41470.1    NWSH01002508    PCG68111.1    AGBW02014561    OWR41419.1    GGFJ01007428    MBW56569.1    GGFJ01007427    MBW56568.1    ADMH02000223    ETN67327.1    GAKP01012085    JAC46867.1    NEVH01022641    PNF18391.1    APCN01001706    JRES01000036    KNC34695.1    PNF18392.1    GBXI01014950    JAC99341.1    GDHF01033545    GDHF01020423    JAI18769.1    JAI31891.1    GDHF01030208    GDHF01002888    JAI22106.1    JAI49426.1    GBXI01001042    JAD13250.1    KK852510    KDR22354.1    AAAB01008980    EAA14028.4    CH933816    EDW17184.1    GDRN01100818    GDRN01100815    JAI58494.1    CH940647    EDW68781.2    GDRN01100823    GDRN01100819    GDRN01100817    JAI58490.1    CP012525    ALC44076.1    CCAG010020111    JXUM01084971    JXUM01084972    KQ563470    KXJ73784.1    CH477279    EAT45005.1    AJVK01023646    CH963876    EDW76959.1    GAMC01011904    JAB94651.1    CH916366    EDV95962.1    CH902618    EDV38709.1    GDRN01100822    GDRN01100816    JAI58487.1    JXJN01010889    CH379070    EAL29967.3    APGK01056097    KB741274    ENN71335.1    CH954178    KQS43002.1    CH479211    EDW33033.1    OUUW01000009    SPP84784.1    CM002912    KMY96578.1    ATLV01021496    KE525319    KFB46572.1    NNAY01000011    OXU32036.1    CM000159    KRK00645.1    AE014296    BT088434    ABI31225.1    ACR40402.1    GL443864    EFN61571.1    AXCM01008285    KQ982944    KYQ48977.1    GL765434    EFZ16279.1    KQ981965    KYN31877.1    GDHC01003883    JAQ14746.1    KQ978233    KYM96073.1    DS232131    EDS35676.1    ABLF02027850    ABLF02027854    EDV95961.1    BDGG01000004    GAU97689.1    ADTU01023705    KQ976691    KYM77954.1    GFXV01001459    MBW13264.1    GBBI01004161    JAC14551.1    GAU97690.1    KK107182    EZA55987.1    KK399589    KFV59153.1    KZ288232    PBC31486.1    GECL01000881    JAP05243.1    AYCK01016379    AYCK01016380    AGCU01113450    AGCU01113451    AGCU01113452    AGCU01113453    AGCU01113454    AGCU01113455    AGCU01113456    AGCU01113457    UFQT01000257    SSX22454.1    KQ430152    KOF64598.1   

Proteomes

UP000005204    UP000053240    UP000053268    UP000218220    UP000007151    UP000000673    + More
UP000095300    UP000076407    UP000235965    UP000075840    UP000075882    UP000037069    UP000091820    UP000027135    UP000007062    UP000009192    UP000095301    UP000008792    UP000092445    UP000092553    UP000075900    UP000092444    UP000078200    UP000069940    UP000249989    UP000008820    UP000092462    UP000007798    UP000075881    UP000075884    UP000092443    UP000001070    UP000007801    UP000092460    UP000001819    UP000019118    UP000075920    UP000008711    UP000008744    UP000268350    UP000069272    UP000075880    UP000030765    UP000215335    UP000002282    UP000000803    UP000000311    UP000075902    UP000075883    UP000075885    UP000075809    UP000002358    UP000192221    UP000078541    UP000075903    UP000078542    UP000046395    UP000002320    UP000005203    UP000007819    UP000186922    UP000005205    UP000078540    UP000053097    UP000242457    UP000002852    UP000028760    UP000007267    UP000261500    UP000261480    UP000053454   

PRIDE

H9IZX1    Q0E8K6   

Pfam

PF01416   PseudoU_synth_1        + More
PF00782   DSPc
PF04189   Gcd10p

Interpro

IPR020095   PsdUridine_synth_TruA_C        + More
IPR001406   PsdUridine_synth_TruA       
IPR020103   PsdUridine_synth_cat_dom_sf       
IPR020097   PsdUridine_synth_TruA_a/b_dom       
IPR029021   Prot-tyrosine_phosphatase-like       
IPR016130   Tyr_Pase_AS       
IPR000387   TYR_PHOSPHATASE_dom       
IPR020422   TYR_PHOSPHATASE_DUAL_dom       
IPR000340   Dual-sp_phosphatase_cat-dom       
IPR003595   Tyr_Pase_cat       
IPR017423   TRM6       

SUPFAM

SSF55120   SSF55120        + More
SSF52799   SSF52799       

Gene 3D

3.30.70.660     3.90.190.10    

CDD

cd00127  DSPc

ProteinModelPortal

H9IZX1   A0A194QWL7   A0A194Q466   A0A2H1VKW0   A0A2A4J818   A0A212EIV9   + More
A0A2M4BU41   A0A2M4BUX4   W5JSH5   A0A034VXN8   A0A1I8PMQ8   A0A182XJK7   A0A2J7PPY8   A0A182HRI5   A0A182KTK0   A0A0L0CQP4   A0A2J7PPY1   A0A0A1WKJ3   A0A0K8TWE1   A0A1A9W4L1   A0A0K8U6C1   A0A0A1XQU0   A0A067RRG6   Q7Q194   B4L909   A0A1I8NK07   A0A1I8M3Y7   A0A0P4VSL0   B4LCD6   A0A0P4W117   A0A1B0A2G3   A0A0M4EJA4   A0A182RR77   A0A1B0FA01   A0A1A9VMW8   A0A182GSG6   Q17EU6   A0A1B0D3R1   B4MXC6   A0A182JTT6   W8BMP8   A0A182NAS1   A0A1A9YN28   B4J2A3   B3M6Q9   A0A0P4VX88   A0A1B0BAB6   Q29EU3   N6TQ04   A0A182W910   A0A0Q5UGL2   B4H5I1   A0A3B0JRM1   A0A182F3V6   A0A182IRN8   A0A0J9RKT0   A0A084W8M8   A0A232FMS0   A0A0R1DU96   Q0E8K6   E2AYB2   A0A182U639   A0A182MJE1   A0A182PTD3   A0A151WME1   K7IPG0   A0A1W4W018   A0A1W4VNI6   A0A1W4W1J5   E9ISQ0   A0A195EVE9   A0A182UUY2   A0A146M7L6   A0A151IAD9   A0A0N5DHI8   B0WVR9   A0A1S4JXH1   A0A088APT9   J9KSS6   B4J2A2   A0A1D1V7L4   A0A158NR53   A0A195B174   A0A2H8TGN9   A0A023F0N7   A0A1D1V9U0   A0A026WIW9   A0A093HXE6   A0A2A3EJX2   M4AWN4   A0A0V0GAZ6   A0A096LSI9   K7F4A5   A0A3B3TRI5   A0A3B3WBX1   A0A336LWW1   A0A0L8FKI5  

PDB

1VS3     E-value=3.35996e-08,     Score=136

KEGG

101740437    no KO assigned | (RefSeq) tRNA pseudouridine synthase-like 1

GO

GO:0001522   GO:0008033   GO:0106029   GO:0003723   GO:0004725   GO:0008138   GO:0031119   GO:0009982   GO:0016021   GO:0016787   GO:0031515   GO:0030488   GO:0043231   GO:0009451   GO:0004190   GO:0006508   GO:0005622   GO:0007264   GO:0008026   GO:0016597  

PANTHER

PTHR11142   PTHR12945  

Length:

223

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00757999999999999

Exp number, first 60 AAs:

0.00613

Total prob of N-in:

0.09340

outside

1  -  223

 

 

Pi

17.725855

Theta

15.337031

Tajima's D

0.557391

CLR

0.333287

CSRT

0.543872806359682

Interpretation

Uncertain