Gene

KWMTBOMO05964

Annotation

ORF2_[Bombyx_mori]

Location

Bomo_Chr10(-):15575103-15576440      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.553 Mitochondrial   Reliability : 1.432

CDS

ATGGGCACAAAACAACTTAATGTCATCCAAAGGGGCATCGCTCAAAAACTTTGTAAGGCATATCGCACGGTCTCCCTGAACTCGGCACTGTTAATGGCTGGGATATTCCCTTTGGATCTCCGAGTTCGAGAGGCAGCCTCTCTATATGAGGCCAAGAAGGGAGTATGCCAGTCATGGCTTGGGGACAGGGAGATCGAGCGAATGTCATCAGCAATGAACGCCCCTCATCCCGCAGAGCAACTGAGTCTGGAGTTTGGCAATCTGGTAGACGAGGAACAATATAACACCCTCAACCACCTTGATGTGAGAATCTTCACGGATGGGAGCAAGATTGAGGGCCGAGTTGGGGCCGCTTTATCCATTTGGGATGGTGAGGCCGAAATATGGTCCCACAAGCTTGCTCTCGCACCCTATTGCACCGTTTATCAGGCCGAACTTTTGGCTCTAAATTATGCAGTCAAAGAAGCCCAGCTCCGAAACGGGTCTACTTTTGGAGTCTTTAGCGACAGCAAAGCGGCATTCCTCACAGTCACTAATCACGGTTCCCTCCATCCACTAGCCGTAGACACCAGAAACATGCTGAAACAATGCACATTGCAAAATAAGACCGTTGCCCTATATTGGATAAAATCACACGCGGGGTTGGAGGGAAACGAGCGAGCAGATCAACTTGCTAAGGAAGCCGCTCTGCTGTCGAAAATGACAGACAGGCAGAACATTACGACCTGTGTCCCGTTTCATACGTCAAGCGAATTATCCGGGTTCACTACGGGGCACGGAGGGTTCTCCGAATACTTGGCTAGGTTCAAGCGTAAGGGGGACCCTTCGTGTGCCTGTGAACCTGGCATGCCGGAAACGGTCGAACACCTGCTGACTTGTTGTCCCATTTTTGGAAAGCAGAGGTTCGAGCTCGAAAATAAAATAAATATAAGTGTAAATAAGGAAAATTTGTGTAGATTAATTGCTGAAAAGTATGTGAAGGAACTGTTTATAGATTATGCTGTACAAATAGTAAAAGTAGTGAATAAGAAAAACAAAGATTAA

Protein

MGTKQLNVIQRGIAQKLCKAYRTVSLNSALLMAGIFPLDLRVREAASLYEAKKGVCQSWLGDREIERMSSAMNAPHPAEQLSLEFGNLVDEEQYNTLNHLDVRIFTDGSKIEGRVGAALSIWDGEAEIWSHKLALAPYCTVYQAELLALNYAVKEAQLRNGSTFGVFSDSKAAFLTVTNHGSLHPLAVDTRNMLKQCTLQNKTVALYWIKSHAGLEGNERADQLAKEAALLSKMTDRQNITTCVPFHTSSELSGFTTGHGGFSEYLARFKRKGDPSCACEPGMPETVEHLLTCCPIFGKQRFELENKINISVNKENLCRLIAEKYVKELFIDYAVQIVKVVNKKNKD

Uniprot

Q93139   A0A2W1BN41   Q9BLI5   Q3V5Y4   A0A2A4JF48   A0A0L7L848   + More
A0A0L7L1P2   A0A0L7LNK8   A0A3S2TN34   A0A0L7KXZ2   A0A1W7R9Y4   A0A3S2NBZ7   A0A0K1IK14   A0A224X5M4   A0A2L2YM05   A0A0K1IK29   A0A087USZ4   A0A1W4XBW8   A0A087TAD8   A0A2P8XKK4   O44317   A0A087TI44   A0A3S3P0A9   A0A087UGW1   A0A131Y6M1   A0A087UHT1   A0A131XRY9   A0A0J7JVQ0   A0A087UD41   A0A1B6KR96   A0A1B6KIY7   A0A1B6M434   A0A2L2YR97   A0A2R5L945   U5EV73   U5EW32   K7JXE6   A0A1W7R6B5   A0A151J8K8   A0A087UJU4   K7JBZ0   A0A2S2Q9P9   A0A077R560   A0A1E3B1U8   A0A224X6B3   K7JA12   V9H1I9   A0A1B6LNL6   A3FMR3   A0A026WDK6   A0A023EYK2   U5ERW4   U5EG91   U5EV16   A0A162EDT1   U5ERR6   A0A2S2Q834   A0A1B6IJC5  

Pubmed

7623845    15247245    28756777    11319268    26227816    26561354    + More
29403074    20075255    25062916    27267057    1665124    17521654    24508170    25474469   

EMBL

D38414    BAA07467.1    KZ149985    PZC75691.1    AB046668    BAB21511.1    + More
AB211537    BAE44464.1    NWSH01001820    PCG70022.1    JTDY01002407    KOB71471.1    JTDY01003675    KOB69169.1    JTDY01000474    KOB77015.1    RSAL01000046    RVE50582.1    JTDY01004660    KOB67904.1    GFAH01000444    JAV47945.1    RSAL01000249    RVE43511.1    KP771712    AKU04650.1    GFTR01008639    JAW07787.1    IAAA01038678    LAA08500.1    KP771711    AKU04648.1    KK121445    KFM80483.1    KK114278    KFM62077.1    PYGN01001848    PSN32539.1    AF015813    AAB94039.1    KK115320    KFM64783.1    NCKU01007943    RWS02258.1    KK119736    KFM76600.1    GEFM01002205    JAP73591.1    KK119855    KFM76920.1    GEFM01006389    JAP69407.1    LBMM01027406    KMQ82197.1    KK119281    KFM75280.1    GEBQ01026019    JAT13958.1    GEBQ01028566    JAT11411.1    GEBQ01009291    GEBQ01001010    JAT30686.1    JAT38967.1    IAAA01042979    LAA10651.1    GGLE01001887    MBY06013.1    GANO01003537    JAB56334.1    GANO01003141    JAB56730.1    AAZX01005323    GEHC01000972    JAV46673.1    KQ979504    KYN21193.1    KK120149    KFM77633.1    AAZX01023184    GGMS01005252    MBY74455.1    HG529600    CDI54043.1    JXNT01000020    ODM14912.1    GFTR01008411    JAW08015.1    AAZX01016607    AAZX01023407    X59239    CAA41925.1    GEBQ01014684    JAT25293.1    EF413180    ABN58714.1    KK107273    EZA53766.1    GBBI01004515    JAC14197.1    GANO01003538    JAB56333.1    GANO01003539    JAB56332.1    GANO01003611    JAB56260.1    LRGB01002060    KZS09540.1    GANO01003612    JAB56259.1    GGMS01004695    MBY73898.1    GECU01020687    JAS87019.1   

Proteomes

UP000218220    UP000037510    UP000283053    UP000054359    UP000192223    UP000245037    + More
UP000285301    UP000036403    UP000002358    UP000078492    UP000094569    UP000053097    UP000076858   

PRIDE

Q93139    Q9BLI5    Q3V5Y4   

Pfam

PF00075   RNase_H        + More
PF00078   RVT_1
PF14529   Exo_endo_phos_2
PF16012   DUF4780
PF09588   YqaJ

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR012337   RNaseH-like_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR036397   RNaseH_sf       
IPR002156   RNaseH_domain       
IPR001584   Integrase_cat-core       
IPR031961   DUF4780       
IPR011335   Restrct_endonuc-II-like       
IPR011604   Exonuc_phg/RecB_C       
IPR019080   YqaJ_viral_recombinase       

SUPFAM

SSF56219   SSF56219        + More
SSF53098   SSF53098       
SSF52980   SSF52980       

Gene 3D

3.30.420.10     3.60.10.10     3.90.320.10    

ProteinModelPortal

Q93139   A0A2W1BN41   Q9BLI5   Q3V5Y4   A0A2A4JF48   A0A0L7L848   + More
A0A0L7L1P2   A0A0L7LNK8   A0A3S2TN34   A0A0L7KXZ2   A0A1W7R9Y4   A0A3S2NBZ7   A0A0K1IK14   A0A224X5M4   A0A2L2YM05   A0A0K1IK29   A0A087USZ4   A0A1W4XBW8   A0A087TAD8   A0A2P8XKK4   O44317   A0A087TI44   A0A3S3P0A9   A0A087UGW1   A0A131Y6M1   A0A087UHT1   A0A131XRY9   A0A0J7JVQ0   A0A087UD41   A0A1B6KR96   A0A1B6KIY7   A0A1B6M434   A0A2L2YR97   A0A2R5L945   U5EV73   U5EW32   K7JXE6   A0A1W7R6B5   A0A151J8K8   A0A087UJU4   K7JBZ0   A0A2S2Q9P9   A0A077R560   A0A1E3B1U8   A0A224X6B3   K7JA12   V9H1I9   A0A1B6LNL6   A3FMR3   A0A026WDK6   A0A023EYK2   U5ERW4   U5EG91   U5EV16   A0A162EDT1   U5ERR6   A0A2S2Q834   A0A1B6IJC5  

PDB

4HKQ     E-value=0.000227133,     Score=105

KEGG

101739204    no KO assigned | (RefSeq) uncharacterized LOC101739204

GO

GO:0004523   GO:0003676   GO:0016021   GO:0003964   GO:0015074   GO:0004190   GO:0006508   GO:0005622   GO:0007264   GO:0008026   GO:0016597  

Length:

347

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

6.21798999999999

Exp number, first 60 AAs:

6.20786

Total prob of N-in:

0.34520

outside

1  -  347

 

 

Pi

0.021726

Theta

0.226318

Tajima's D

-1.009167

CLR

119.721009

CSRT

0

Interpretation

Uncertain