Gene

KWMTBOMO05955

Annotation

PREDICTED:_uncharacterized_protein_LOC106138993_[Amyelois_transitella]

Location

Bomo_Chr10(-):15412542-15413740      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.924

CDS

ATGAAAGAAATAGCACTGCATGGAAGAGTAGATGATGCTGCTTTAATGGAATACGTCATAGATGGTATCAATGATCCTGAATCTAACAAAGCAATTTTATATGGAGCTACAGATTTGAAAGATTTTCGAAAGAAGCTAGACATCTATAGTGATTTTCGAAAGAAGCTGGACGTTTATAGCGATTTTCAAAAGAAAATGAGTACACTATCATATGACCAGGTAGTTCCGCAAGTAAATGCAGATGCAGGGACAACGTCATTAAGAAAACCGCATTTTAAAAGATGCTACAACTGTGGTGATTTAGACCATCAATCCCCCGGCTGTACAAAGGGCATTAAATGCTTTAAGTGTAATAAATTCGGCCACAAGGGAAACGAATGTAAGAATAAAGCCAAGAAGTCTTTAATTATTCAGAAGAAAAACGAAGAAGAAAAAAATCCCTTACAAAAGTTCGGCTTACGGGTATACAAAGAAGTACTTATCAAAGGTGTTTTTACTACTCAGCTACAGATTGATGATGCTGTTACGGATATCAAATTTTACATTGTGGAAGATGATATAATACCTGTAAAGCTGATCATTGGCAACCCCATACTGCGTGAATTCGAAGTTAAGTTTACAAGAAATGGTATTGTAATGGAGAAGATTCCACTTTGTGCTATTGTTGTTGAGAAGGACGAGGTCAAAGAAGACTACAAGAAATTAAAAAAAGAAGATTACAAGAAGTTAGACAAAGAAGATTATAAGAAGTTAGAGAAAGAAGACTGCAAGAAGTTGGTTAAAGTACCTTACCAGAATCATTTCACACAAAATAGAATACTATACAAAGAGAAGAATGGAAGTAGACTTATCGCTGTACCAAAGAAGATGGATAAAGAAATTAAAAGAGAGAGTTATAGGAGAGGTCGACTAAAAGTTGAAAATTGGGAATGGAGGAGGTCCGATACATACGACTAG

Protein

MKEIALHGRVDDAALMEYVIDGINDPESNKAILYGATDLKDFRKKLDIYSDFRKKLDVYSDFQKKMSTLSYDQVVPQVNADAGTTSLRKPHFKRCYNCGDLDHQSPGCTKGIKCFKCNKFGHKGNECKNKAKKSLIIQKKNEEEKNPLQKFGLRVYKEVLIKGVFTTQLQIDDAVTDIKFYIVEDDIIPVKLIIGNPILREFEVKFTRNGIVMEKIPLCAIVVEKDEVKEDYKKLKKEDYKKLDKEDYKKLEKEDCKKLVKVPYQNHFTQNRILYKEKNGSRLIAVPKKMDKEIKRESYRRGRLKVENWEWRRSDTYD

Uniprot

A0A023F013   A0A023EYF0   A0A0J7KQL1   A0A151IWN5   J9JQ65   E9IMZ6   + More
W8BB66   W8APB2   A0A0A1XB16   A0A212FCW5   A0A069DWV3   A0A2M3Z4S1   A0A2M3Z2X0   A0A0C9Q2I4   A0A034VAM6   A0A1B0CR74   A0A151J262   W8C8Q1   A0A1S4HEU1   A0A0E4G8D8   A0A2M3Z3Z7   A0A2M4BF88   A0A2M4BDL5   A0A2M4BDJ8   A0A2M4BFF1   A0A2M4BFM2   A0A182W804  

Pubmed

25474469    21282665    24495485    25830018    22118469    26334808    + More
25348373    12364791   

EMBL

GBBI01004613    JAC14099.1    GBBI01004549    JAC14163.1    LBMM01004258    KMQ92652.1    + More
KQ980852    KYN12192.1    ABLF02005846    GL764261    EFZ18057.1    GAMC01016174    JAB90381.1    GAMC01020207    JAB86348.1    GBXI01005773    JAD08519.1    AGBW02009151    OWR51557.1    GBGD01000341    JAC88548.1    GGFM01002744    MBW23495.1    GGFM01002109    MBW22860.1    GBYB01008203    JAG77970.1    GAKP01019383    JAC39569.1    AJWK01024440    KQ980436    KYN16061.1    GAMC01007326    JAB99229.1    AAAB01008984    HACL01000135    CFW94429.1    GGFM01002486    MBW23237.1    GGFJ01002579    MBW51720.1    GGFJ01001952    MBW51093.1    GGFJ01001974    MBW51115.1    GGFJ01002621    MBW51762.1    GGFJ01002620    MBW51761.1   

Proteomes

UP000036403    UP000078492    UP000007819    UP000007151    UP000092461    UP000075920    + More

Pfam

PF17921   Integrase_H2C2        + More
PF00078   RVT_1
PF00098   zf-CCHC
PF17917   RT_RNaseH
PF00665   rve
PF17919   RT_RNaseH_2
PF02037   SAP
PF00077   RVP
PF03732   Retrotrans_gag

Interpro

IPR041588   Integrase_H2C2        + More
IPR036397   RNaseH_sf       
IPR041373   RT_RNaseH       
IPR000477   RT_dom       
IPR021109   Peptidase_aspartic_dom_sf       
IPR012337   RNaseH-like_sf       
IPR036875   Znf_CCHC_sf       
IPR001878   Znf_CCHC       
IPR001584   Integrase_cat-core       
IPR041577   RT_RNaseH_2       
IPR001995   Peptidase_A2_cat       
IPR003034   SAP_dom       
IPR001969   Aspartic_peptidase_AS       
IPR018061   Retropepsins       
IPR005162   Retrotrans_gag_dom       

SUPFAM

SSF50630   SSF50630        + More
SSF53098   SSF53098       
SSF57756   SSF57756       

Gene 3D

2.40.70.10     3.30.420.10    

ProteinModelPortal

A0A023F013   A0A023EYF0   A0A0J7KQL1   A0A151IWN5   J9JQ65   E9IMZ6   + More
W8BB66   W8APB2   A0A0A1XB16   A0A212FCW5   A0A069DWV3   A0A2M3Z4S1   A0A2M3Z2X0   A0A0C9Q2I4   A0A034VAM6   A0A1B0CR74   A0A151J262   W8C8Q1   A0A1S4HEU1   A0A0E4G8D8   A0A2M3Z3Z7   A0A2M4BF88   A0A2M4BDL5   A0A2M4BDJ8   A0A2M4BFF1   A0A2M4BFM2   A0A182W804  

PDB

2LLI     E-value=0.0012237,     Score=98

KEGG

101735568    no KO assigned | (RefSeq) uncharacterized LOC101735568

GO

GO:0015074   GO:0003676   GO:0008270   GO:0004190   GO:0004784   GO:0005525   GO:0030131   GO:0005488   GO:0005622   GO:0007264   GO:0008026   GO:0016597  

Length:

318

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0002

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02526

outside

1  -  318

 

 

Pi

263.089415

Theta

167.430842

Tajima's D

1.386015

CLR

0.377272

CSRT

0.76031198440078

Interpretation

Uncertain