Gene

KWMTBOMO05954

Pre Gene Modal

BGIBMGA002903

Annotation

PREDICTED:_Bardet-Biedl_syndrome_1_protein_[Bombyx_mori]

Location

Bomo_Chr10(-):15342062-15350220      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.499 PlasmaMembrane   Reliability : 1.493

CDS

ATGACCAGTATGTCCCGCTGGTTGGACGTGGAAGTAGGTACAGATGATATAGATCTAAATACTTTGCCGTCTAATTTAGCTCTTGTCGATCTGCAGAATGATAAAGATTATAAACTACTGGTCGCTGATTTTGGAAAAGGCGAAGAGGGCCCTAAACTTAAGGTATTCAAAGGAACAATGCAAACATCAGACATCCTGTTACCAGAACTACCCCTTGGCATAGTTGGTTTCTATACGTCAGAGGCAATTCCAAGGTCCATGCCAATCATAGCTGTGGCATTCAGCTCTGCAGTATACTTATACAGAAATATGAAGTTTTTTTACAAATATCTATTGCCATCGGTTGATTTGAGCGTCCACGAGATGGATGTTTGGAAGCAGCTAATAAACTCAGAAAATCAGACACCAGAAATGATAACAATACTCCAAGAGAATTTAAAAGCTATTCCTCCGAAGATATTAAGTCTGCAATCTCAGAATTTCCTGGCTCTTACCTTAGACCAGCAGTTGGAATACCTAGAACAAGCTGCCGAACTACCTATGTGGAAACCTCCTGAGATCACATGCATCAGTACATTGAAGATGAACTCAATAGACCAGTATTCTGTGAGTTGTTTGGTAGTCGGTACAGAAGATGGTTACATTATTATTTTGGATCCCCAAACATTTACAACTCTGTCGCAGGGAGAAATCAAGGTCATCACCGCCGATGAAAGCATCATAGTTATATGTACAGACAACACGATGTCATGTTACACCAAAAAGGGTAAGAAGCAGTGGTGCGTCAACTTGGAGCACAGGCCGATATCGATGACTCTGGTGCCGGTACTGCATTTGGGAGTCACCTTAGTGGGGGTGGCGCTGACTTCAGGGCATGTCCACTTCTATGAAGGGAAAGCGCGTTTGGACACATTGTTTGTTAGAGATGTCGCTTCGGTGATGAGGTTCGGTCGGTTGGGTCAAGAGGAGCACGTGCTCATCGTTGTGACCGGCAGTGAGTACATTTTGTAA

Protein

MTSMSRWLDVEVGTDDIDLNTLPSNLALVDLQNDKDYKLLVADFGKGEEGPKLKVFKGTMQTSDILLPELPLGIVGFYTSEAIPRSMPIIAVAFSSAVYLYRNMKFFYKYLLPSVDLSVHEMDVWKQLINSENQTPEMITILQENLKAIPPKILSLQSQNFLALTLDQQLEYLEQAAELPMWKPPEITCISTLKMNSIDQYSVSCLVVGTEDGYIIILDPQTFTTLSQGEIKVITADESIIVICTDNTMSCYTKKGKKQWCVNLEHRPISMTLVPVLHLGVTLVGVALTSGHVHFYEGKARLDTLFVRDVASVMRFGRLGQEEHVLIVVTGSEYIL

Uniprot

H9J068   A0A2A4JB20   A0A2H1W376   A0A2A4JCJ0   A0A3S2TTQ4   A0A194Q555   + More
A0A194QWL4   A0A0L7LQI9   B0WXE2   A0A1S4FLT6   Q16WI6   A0A182RSM4   W5JPA7   Q7QJD7   A0A182KRA5   A0A182GWW1   A0A182PQG2   A0A182NHW6   A0A182FF33   A0A336KP14   A0A084WN87   A0A182U0L2   A0A2C9GRU4   A0A182XYV1   A0A182X3S4   A0A182M5X6   A0A182WJ93   A0A182JY52   A0A067RAV1   T1J8I6   A0A1W4X9F6   E0VBP2   A0A182QKI4   A7S5W5   A0A2I4CFM7   T1JYJ2   A0A1B6LXZ3   D6WZ82   A0A1A8IQ14   A0A1A8H3R4   A0A1A8CL89   A0A1A8U323   N6TQ64   A0A3B5LHV2   A0A1A7XV17   A0A1A8Q282   F7DYZ6   A0A1A8MD68   A0A315VHN2   M3ZLB9   B1H2V5   A0A2B4SD42   Q4SE99   U4UBI2   H3CYE9   A0A3Q3AUL7   A0A087YHA2   A0A0S7GH77   A4QP86   K7F525   A0A3Q2XF18   A0A0S7GM05   A0A3M6TAC9   A0A3B3YNA7   A0A0P4VPS7   A0A1B6E6Y3   B3DFT2   A0A3B4GJB6   A0A3B1ITQ8   A0A3Q2WC54   A0A1L8GK24   G3P7I9   A0A3P8Q4B4   A0A3P9CLH6   A0A3P9MWJ2   A0A3B3RF69   W5ULG6   A0A3S2NXZ5   A0A147AID1   A0A3B3BFI8   A0A3Q2CAW1   A0A1S3FK75   A0A3Q3WIM6   A0A3Q3GPE1   S4RMU3   A0A3Q0SEI3   A0A3Q3LZA8   E2BCF4   H2N1F5   A0A3Q1BHR1   A0A3P8SPG8   A0A0K2T5I1   A0A3P9HFF4   A0A1S3I1L6   H2SDM2   A0A3Q1IP34   A0A0M8ZZ34   A0A3P8Z8W1   A0A2U9CQV5   V9KUN1  

Pubmed

19121390    26354079    26227816    17510324    20920257    23761445    + More
12364791    14747013    17210077    20966253    26483478    24438588    25244985    24845553    20566863    17615350    18362917    19820115    23537049    20431018    29703783    23542700    15496914    17381049    30382153    23594743    25329095    27762356    25186727    29240929    23127152    29451363    20798317    17554307    21551351    25069045    24402279   

EMBL

BABH01019007    BABH01019008    NWSH01002062    PCG69275.1    ODYU01006043    SOQ47539.1    + More
PCG69274.1    RSAL01000002    RVE54987.1    KQ459472    KPJ00135.1    KQ461175    KPJ07961.1    JTDY01000324    KOB77695.1    DS232163    EDS36472.1    CH477565    EAT38940.1    ADMH02000549    ETN65941.1    AAAB01008807    EAA04615.4    JXUM01094165    KQ564108    KXJ72777.1    UFQS01000582    UFQT01000582    SSX05125.1    SSX25486.1    ATLV01024577    KE525352    KFB51681.1    APCN01000203    AXCM01000778    KK852575    KDR20997.1    JH431954    DS235033    EEB10798.1    AXCN02000381    DS469585    EDO40876.1    CAEY01001108    GEBQ01011420    JAT28557.1    KQ971372    EFA10394.1    HAED01012970    HAEE01008185    SBQ99392.1    HAEB01008917    HAEC01009678    SBQ77894.1    HADZ01016563    HAEA01007120    SBP80504.1    HADY01010838    HAEJ01001051    SBS41508.1    APGK01059190    KB741292    ENN70456.1    HADW01020567    HADX01006423    SBP21967.1    HAEH01009611    HAEI01012939    SBR87601.1    AAMC01091536    HAEF01013327    HAEG01000269    SBR54486.1    NHOQ01001897    PWA21793.1    BC161145    AAI61145.1    LSMT01000095    PFX27801.1    CAAE01014623    CAG01033.1    KB632186    ERL89688.1    AYCK01026358    AYCK01026359    AYCK01026360    GBYX01453111    GBYX01453109    JAO28406.1    BC139697    BC162522    AAI39698.1    AAI62522.1    AGCU01130984    GBYX01453113    GBYX01453108    JAO28402.1    RCHS01004038    RMX38224.1    GDRN01108113    JAI57309.1    GEDC01003605    JAS33693.1    BX511175    BX530023    CR381637    BC162155    AAI62155.1    CM004472    OCT84146.1    JT418748    AHH42831.1    CM012455    RVE59285.1    GCES01008122    JAR78201.1    GL447257    EFN86690.1    HACA01003350    CDW20711.1    KQ435794    KOX73847.1    CP026260    AWP18219.1    JW870158    AFP02676.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000053268    UP000053240    UP000037510    + More
UP000002320    UP000008820    UP000075900    UP000000673    UP000007062    UP000075882    UP000069940    UP000249989    UP000075885    UP000075884    UP000069272    UP000030765    UP000075902    UP000075840    UP000076408    UP000075883    UP000075920    UP000075881    UP000027135    UP000192223    UP000009046    UP000075886    UP000001593    UP000192220    UP000015104    UP000007266    UP000019118    UP000261380    UP000008143    UP000002852    UP000225706    UP000030742    UP000007303    UP000264800    UP000028760    UP000007267    UP000264840    UP000275408    UP000261480    UP000000437    UP000261460    UP000018467    UP000186698    UP000007635    UP000265100    UP000265160    UP000242638    UP000261540    UP000221080    UP000261560    UP000265020    UP000081671    UP000261620    UP000261660    UP000245300    UP000261340    UP000261640    UP000008237    UP000001038    UP000257160    UP000265080    UP000265200    UP000085678    UP000005226    UP000265040    UP000053105    UP000265140    UP000246464   

PRIDE

H9J068   

Pfam

PF14779   BBS1        + More
PF00887   ACBP

Interpro

IPR028784   BBS1        + More
IPR032728   BBS1_N       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR011047   Quinoprotein_ADH-like_supfam       
IPR036322   WD40_repeat_dom_sf       
IPR011044   Quino_amine_DH_bsu       
IPR035984   Acyl-CoA-binding_sf       
IPR014352   FERM/acyl-CoA-bd_prot_sf       
IPR000582   Acyl-CoA-binding_protein       
IPR022408   Acyl-CoA-binding_prot_CS       

SUPFAM

SSF50998   SSF50998        + More
SSF50978   SSF50978       
SSF50969   SSF50969       
SSF47027   SSF47027       

Gene 3D

2.130.10.10     1.20.80.10    

CDD

cd00435  ACBP

ProteinModelPortal

H9J068   A0A2A4JB20   A0A2H1W376   A0A2A4JCJ0   A0A3S2TTQ4   A0A194Q555   + More
A0A194QWL4   A0A0L7LQI9   B0WXE2   A0A1S4FLT6   Q16WI6   A0A182RSM4   W5JPA7   Q7QJD7   A0A182KRA5   A0A182GWW1   A0A182PQG2   A0A182NHW6   A0A182FF33   A0A336KP14   A0A084WN87   A0A182U0L2   A0A2C9GRU4   A0A182XYV1   A0A182X3S4   A0A182M5X6   A0A182WJ93   A0A182JY52   A0A067RAV1   T1J8I6   A0A1W4X9F6   E0VBP2   A0A182QKI4   A7S5W5   A0A2I4CFM7   T1JYJ2   A0A1B6LXZ3   D6WZ82   A0A1A8IQ14   A0A1A8H3R4   A0A1A8CL89   A0A1A8U323   N6TQ64   A0A3B5LHV2   A0A1A7XV17   A0A1A8Q282   F7DYZ6   A0A1A8MD68   A0A315VHN2   M3ZLB9   B1H2V5   A0A2B4SD42   Q4SE99   U4UBI2   H3CYE9   A0A3Q3AUL7   A0A087YHA2   A0A0S7GH77   A4QP86   K7F525   A0A3Q2XF18   A0A0S7GM05   A0A3M6TAC9   A0A3B3YNA7   A0A0P4VPS7   A0A1B6E6Y3   B3DFT2   A0A3B4GJB6   A0A3B1ITQ8   A0A3Q2WC54   A0A1L8GK24   G3P7I9   A0A3P8Q4B4   A0A3P9CLH6   A0A3P9MWJ2   A0A3B3RF69   W5ULG6   A0A3S2NXZ5   A0A147AID1   A0A3B3BFI8   A0A3Q2CAW1   A0A1S3FK75   A0A3Q3WIM6   A0A3Q3GPE1   S4RMU3   A0A3Q0SEI3   A0A3Q3LZA8   E2BCF4   H2N1F5   A0A3Q1BHR1   A0A3P8SPG8   A0A0K2T5I1   A0A3P9HFF4   A0A1S3I1L6   H2SDM2   A0A3Q1IP34   A0A0M8ZZ34   A0A3P8Z8W1   A0A2U9CQV5   V9KUN1  

PDB

4V0O     E-value=4.48451e-27,     Score=301

KEGG

101739624    K16746 Bardet-Biedl syndrome 1 protein | (RefSeq) Bardet-Biedl syndrome 1 protein

GO

GO:1905515   GO:0034464   GO:0016021   GO:0000062   GO:0061512   GO:0036064   GO:0005930   GO:0005113   GO:0005119   GO:0005813   GO:0061469   GO:0033339   GO:0008593   GO:0070121   GO:0060028   GO:0001947   GO:0060972   GO:0003341   GO:0032402   GO:0060027   GO:0007369   GO:0060026   GO:0060271   GO:0007368   GO:0042445   GO:0051219   GO:0060296   GO:0001764   GO:0008104   GO:0045444   GO:0030534   GO:0021756   GO:0021987   GO:0042048   GO:0001895   GO:0016358   GO:0021766   GO:0061351   GO:0048854   GO:0021591   GO:0007608   GO:0005102   GO:0031514   GO:0044255   GO:0034451   GO:0009566   GO:0051216   GO:0000226   GO:0008594   GO:0005515   GO:0046872   GO:0004784   GO:0005525   GO:0030131   GO:0005488   GO:0005622   GO:0007264   GO:0008026   GO:0016597  

PANTHER

PTHR20870  

Length:

336

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

26.54036

Exp number, first 60 AAs:

0.00324

Total prob of N-in:

0.09241

outside

1  -  336

 

 

Pi

237.823529

Theta

176.293015

Tajima's D

0.40102

CLR

1.257926

CSRT

0.48307584620769

Interpretation

Uncertain