Silkworm Genome Informatics Database

Gene

KWMTBOMO05951

Pre Gene Modal

BGIBMGA002799

Annotation

PREDICTED:_uncharacterized_protein_LOC106129920_[Amyelois_transitella]

Location

Bomo_Chr10(+):15310241-15312571 View in EpiBrowser

Transcription factor

THAP

Location in the cell

Nuclear Reliability : 3.948

CDS

ATGCCGAAGTGTTCGATGAGAAATTGTAAAAATACTACATCAAAAACGTTAAAAAAGGATGGGATATCGTATTTTCGTTTTCCTCGTGACCCAATACGATGCGGAGAATGGACATCAATCGTCAGTCAAGAAAGGCGTCAAGATTTTTTTAAGCCAAATAGTTCTAACGTCGTTTGCTCTGAGCATTTTTTGGACAAAGACATGTATGTCAGTGCAAAAGGCATAAAGCGTCTTCTTAAAACGGCTGTTCCTAGTGTACCGGATATATCAGCACAGGACCTCGAGTTTATTGAAATACCGGATGATGGCGGTGATACTGAAGTCTGTCGTACATGTTCAATGTCTGATGTAGAAAATAAGGAAGTCAATACATCCCTGAGTACAAGCTTAATTTTACATATACACACCACCGAAGGATCCACCACGGATACACCACGAAAAGTTGACATAACAAGTGAACTCCACAAATTCCGCAGAAGGCTAATTAGCAAGGATAAACTCATTAACAACTTAAGAAAGAAAAATTCTAGACTTGTTAAAAAGACCATTTTACTTAAGAATGCGTTAAAACTTTTAAAGAAAAGATTTAAAGATTGA

Protein

MPKCSMRNCKNTTSKTLKKDGISYFRFPRDPIRCGEWTSIVSQERRQDFFKPNSSNVVCSEHFLDKDMYVSAKGIKRLLKTAVPSVPDISAQDLEFIEIPDDGGDTEVCRTCSMSDVENKEVNTSLSTSLILHIHTTEGSTTDTPRKVDITSELHKFRRRLISKDKLINNLRKKNSRLVKKTILLKNALKLLKKRFKD

Uniprot

A0A3S2P1T5 A0A2A4KA39 A0A2H1VM77 J9L5F4 A0A1E1VY16 A0A2A4K4M7 + More
A0A3Q3NFH9 A0A2A4JIZ2 A0A3Q2XCG8 A0A3B3DPQ2

Pubmed

29451363

EMBL

RSAL01000002 RVE54928.1 NWSH01000027 PCG80590.1 ODYU01003321 SOQ41917.1 + More
ABLF02036997 GDQN01011480 JAT79574.1 NWSH01000136 PCG79197.1 NWSH01001398 PCG71372.1

Proteomes

UP000283053 UP000218220 UP000007819 UP000261640 UP000264820 UP000261560 + More

Pfam

PF05485   THAP        + More
PF00096   zf-C2H2
PF07776   zf-AD
PF12171   zf-C2H2_jaz
PF12017   Tnp_P_element

Interpro

IPR006612   THAP_Znf        + More
IPR038441   THAP_Znf_sf
IPR012934   Znf_AD
IPR036236   Znf_C2H2_sf
IPR022755   Znf_C2H2_jaz
IPR013087   Znf_C2H2_type
IPR021896   Transposase_37
IPR026519   THAP7

SUPFAM

SSF57667 SSF57667

Gene 3D

3.30.40.180

ProteinModelPortal

A0A3S2P1T5 A0A2A4KA39 A0A2H1VM77 J9L5F4 A0A1E1VY16 A0A2A4K4M7 + More
A0A3Q3NFH9 A0A2A4JIZ2 A0A3Q2XCG8 A0A3B3DPQ2

PDB

2D8R E-value=0.00014827, Score=103

KEGG

101741134 K23204 THAP domain-containing protein 2 | (RefSeq) uncharacterized LOC101741134

GO

GO:0003677 GO:0008270 GO:0005634 GO:0004803 GO:0006313 GO:0003676 GO:0046872 GO:0004784 GO:0005525 GO:0030131 GO:0005488 GO:0005622 GO:0007264 GO:0008026 GO:0016597

PANTHER

PTHR47502

Length:

198

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00017

Exp number, first 60 AAs:

0

Total prob of N-in:

0.50798

inside

1 - 198

Pi

235.19301

Theta

164.343237

Tajima's D

1.067449

CLR

0

CSRT

0.674916254187291

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics