Gene

KWMTBOMO05947

Pre Gene Modal

BGIBMGA002908

Annotation

PREDICTED:_23_kDa_integral_membrane_protein-like_[Bombyx_mori]

Location

Bomo_Chr10(-):15251299-15255180      View in EpiBrowser

Full name

Tetraspanin      

Location in the cell

PlasmaMembrane   Reliability : 4.377

CDS

ATGACATTTGTGTTTGCCGTGGTCGATACGAGGATCCTAGCGCAGTACGGCGCAGAGCAAGCCAGCGGTTCGTTTATAGGAGATGTAGTCGTCAGCGTGGCCAGTGTGCTGGTGATGACAGTTGCTGTACTCGGAATCATTGGCGTCGTGAAGAGCAGCATTAAAATTATCTACTTGTACGTTGGATTCCTCATGCTCTTGACGGTCTTGGAAGTTTTAATAGGAATTTACGTGTCGATTCAACGTTATGGTCTTCAATTCCGGGTCGGTGAATGGATACGCGAGGAGTTCTATAGAAACGTCACTGGCGCAAGCAAGGAGGCCCATCGGAAACTCTGGGAAAGAATCCAGATCAACTATCAATGTTGCGGACTGAACGGGCCACAGGATTACACAGCAATGGACCAACCCATCAGCCTGTCGTGTTGCTACCAAGCCTACCAAGCTAGTACTCTCGAAGCGGAGCAGAAGATGTACAAAACTTGCATTGAAACTTCAAGCTATTTCCGCGAGGGCTGCGAAGATGAAATCCTCGGAATCTTAGCGGCTGATGCTGATTATCTTCTTGGAGTGGCCGTGATCAGTTTTTGGTTTGAGGCGGTGGGCATGCTTCTGGCTATGTGGGTCGCGAATCAACTGAAGAATAGCGTTCGCGTTTATAAGCACACAGTTAAATATTAA

Protein

MTFVFAVVDTRILAQYGAEQASGSFIGDVVVSVASVLVMTVAVLGIIGVVKSSIKIIYLYVGFLMLLTVLEVLIGIYVSIQRYGLQFRVGEWIREEFYRNVTGASKEAHRKLWERIQINYQCCGLNGPQDYTAMDQPISLSCCYQAYQASTLEAEQKMYKTCIETSSYFREGCEDEILGILAADADYLLGVAVISFWFEAVGMLLAMWVANQLKNSVRVYKHTVKY

Similarity

Belongs to the tetraspanin (TM4SF) family.

Uniprot

H9J073   A0A3S2P1W8   A0A212F781   A0A194Q457   A0A2A4JFK4   A0A212F783   + More
A0A2A4JFM4   A0A2H1W865   A0A0L7KZ26   A0A2H1W9Q9   A0A3S2LJ58   A0A212F793   A0A194Q9P1   A0A1B0D9D5   A0A1B0CUN9   S4PYD2   A0A0N0BD54   A0A1Y1LBM6   A0A1J1IM26   A0A0T6BG20   A0A0L7QPG2   E2A972   A0A1Y1L9E2   A0A0L7R0A6   Q28Y97   B4GCW3   A0A1E1WV10   A0A3P4RS97   A0A3B0JKU2   A0A1E1W4P8   A0A1A6H9C0   A0A034WD08   A0A3B4EFU9   B4J8Z2   A0A0K8WBF2   A0A0A1WG71   A0A0T6BC03   A0A210QPE6   V4C6Z7   A0A195F0D5   A0A2A3EHK8   V9IIY1   B4LQ51   A0A3Q7VI89   W8BXV6   A0A3Q7TNG6   G1M6M2   A0A3L7HFT2   H3BEQ7   A1Z8K7   B3NSG4   B4KR28   B4HNH3   A0A023GE71   G3MMI9   A0A3Q0DED7   A0A3Q0DAI7   A0A1U7QRX0   A0A212EWY8   B4P651  

Pubmed

19121390    22118469    26354079    26227816    23622113    28004739    + More
20798317    15632085    17994087    25348373    25830018    28812685    23254933    24495485    20010809    29704459    9215903    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    22216098    17550304   

EMBL

BABH01019014    RSAL01000002    RVE54994.1    AGBW02009903    OWR49601.1    KQ459472    + More
KPJ00129.1    NWSH01001766    PCG70203.1    OWR49602.1    PCG70202.1    ODYU01006924    SOQ49203.1    JTDY01004293    KOB68321.1    SOQ49204.1    RVE54996.1    OWR49603.1    KPJ00126.1    AJVK01012925    AJWK01029481    GAIX01003493    JAA89067.1    KQ435878    KOX69968.1    GEZM01061860    JAV70281.1    CVRI01000054    CRL00126.1    LJIG01000817    KRT86123.1    KQ414821    KOC60444.1    GL437711    EFN70057.1    GEZM01061859    JAV70282.1    KQ414672    KOC64231.1    CM000071    EAL26068.1    CH479181    EDW32526.1    GDQN01000423    JAT90631.1    CYRY02043399    VCX37759.1    OUUW01000001    SPP73856.1    GDQN01010381    GDQN01009120    JAT80673.1    JAT81934.1    LZPO01044424    OBS74465.1    GAKP01006771    GAKP01006770    JAC52182.1    CH916367    EDW01341.1    GDHF01004139    JAI48175.1    GBXI01016899    JAC97392.1    LJIG01002080    KRT84860.1    NEDP02002573    OWF50595.1    KB201305    ESO97434.1    KQ981880    KYN33938.1    KZ288246    PBC31188.1    JR049622    AEY61020.1    CH940648    EDW61336.1    GAMC01002393    JAC04163.1    ACTA01105006    RAZU01000231    RLQ64814.1    AFYH01004980    AFYH01004981    AFYH01004982    AFYH01004983    AFYH01004984    AFYH01004985    AFYH01004986    AFYH01004987    AFYH01004988    AFYH01004989    AE013599    AAM68735.1    CH954179    EDV56466.1    CH933808    EDW10384.2    CH480816    EDW47409.1    GBBM01003251    JAC32167.1    JO843090    AEO34707.1    AGBW02011867    OWR45999.1    CM000158    EDW90926.1   

Proteomes

UP000005204    UP000283053    UP000007151    UP000053268    UP000218220    UP000037510    + More
UP000092462    UP000092461    UP000053105    UP000183832    UP000053825    UP000000311    UP000001819    UP000008744    UP000268350    UP000092124    UP000261440    UP000001070    UP000242188    UP000030746    UP000078541    UP000242457    UP000008792    UP000286642    UP000008912    UP000273346    UP000008672    UP000000803    UP000008711    UP000009192    UP000001292    UP000189706    UP000002282   

PRIDE

H9J073    A1Z8K7   

Pfam

PF00335   Tetraspanin

Interpro

IPR008952   Tetraspanin_EC2_sf        + More
IPR018499   Tetraspanin/Peripherin       
IPR000301   Tetraspanin       
IPR018503   Tetraspanin_CS       

SUPFAM

SSF48652   SSF48652       

Gene 3D

1.10.1450.10    

ProteinModelPortal

H9J073   A0A3S2P1W8   A0A212F781   A0A194Q457   A0A2A4JFK4   A0A212F783   + More
A0A2A4JFM4   A0A2H1W865   A0A0L7KZ26   A0A2H1W9Q9   A0A3S2LJ58   A0A212F793   A0A194Q9P1   A0A1B0D9D5   A0A1B0CUN9   S4PYD2   A0A0N0BD54   A0A1Y1LBM6   A0A1J1IM26   A0A0T6BG20   A0A0L7QPG2   E2A972   A0A1Y1L9E2   A0A0L7R0A6   Q28Y97   B4GCW3   A0A1E1WV10   A0A3P4RS97   A0A3B0JKU2   A0A1E1W4P8   A0A1A6H9C0   A0A034WD08   A0A3B4EFU9   B4J8Z2   A0A0K8WBF2   A0A0A1WG71   A0A0T6BC03   A0A210QPE6   V4C6Z7   A0A195F0D5   A0A2A3EHK8   V9IIY1   B4LQ51   A0A3Q7VI89   W8BXV6   A0A3Q7TNG6   G1M6M2   A0A3L7HFT2   H3BEQ7   A1Z8K7   B3NSG4   B4KR28   B4HNH3   A0A023GE71   G3MMI9   A0A3Q0DED7   A0A3Q0DAI7   A0A1U7QRX0   A0A212EWY8   B4P651  

KEGG

101739768    no KO assigned | (RefSeq) 23 kDa integral membrane protein-like

GO

GO:0016021   GO:0001772   GO:0015116   GO:0005525   GO:0030131   GO:0005488   GO:0005622   GO:0007264   GO:0008026   GO:0016597  

Subcellular location

Membrane  

Length:

226

Number of predicted TMHs:

3

Exp number of AAs in TMHs:

67.70496

Exp number, first 60 AAs:

26.46006

Total prob of N-in:

0.07308

POSSIBLE N-term signal

sequence

outside

1  -  29

TMhelix

30  -  49

inside

50  -  55

TMhelix

56  -  78

outside

79  -  187

TMhelix

188  -  210

inside

211  -  226

 

 

Pi

371.135405

Theta

197.807973

Tajima's D

2.698573

CLR

0.460238

CSRT

0.96185190740463

Interpretation

Uncertain