SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO05940
Pre Gene Modal
BGIBMGA002910
Annotation
putative_sulfate/bicarbonate/oxalate_exchanger_sat-1_[Operophtera_brumata]
Location in the cell
PlasmaMembrane   Reliability : 4.927
 

Sequence

CDS
ATGAAGACTTTGAAGAAACGGTTGCCGATCCTCGGTTGGTTACCCAACTATAAACCCGAATATTTCGTGCAAGACTTCATTGCCGGCATAACAGTGGGATTTACAGCCATACCGCAAGGCATAGCGTATGCTGTGGTGGCGGGGCAATCTCCGGAACATGGGCTCTATGCATCTCTGACTTCAGGAGTAATATACGTTATCTTCGGTAGCCGCTATAACGTGACTGTTGGGCCGACAGCTATCTTGGCAGCGATGACAGCAAAATACGTATCCGGCTATTCAGTGGATTTCGCAATTTTAACTGCGTTCGTTTCTGGTGTAGTGATTTTGTTGATGGGAGTGTTTCATCTCGGTTTTTTGGTTGAATTTATATCAATGCCGGTCATTAGTGGATTTACGACAGCCGCAGCCTTACAAATCGCTGCGTTACAACTAAAACCATTCTTCGGTCTCAGTGGATCATCCGGGAACAACTTTACCGAGTCCGTACAAAATCTAATACGTAATTTCAAAACTATGAAACTATACGAATTTCTTCTTGGATCAGCCACAATCATCATGTTGATGCTATTGAAAAAACTAGGTGATGGTTGCAAAAGAACTGACGGTTTATTTAAAAAAATACGATGGTTCATTTCGCTGTCTCGGAATGCGGTGGTTGTGATGGTGGGGATAACAGTAGCTTTTGTCATTAAAATTGTGTTTGATCAAGAACCATTAGAATTAATCGGTGCTATTGACGGTGGATTACCCAAATTCAGCTGGCCACCATTTTCTACAGTGGTCGGCAACGAAACATACAATTTTGGAGATATGATGGGCGTCTTAGGCCCCGGGTTTATAGTGCTACCGTTTGTTGCAATTATGGAAACGGTGGCCATCGCTAAAGCTTTTGCAGGAGGCGCCATAGTGGATGCCAATCAAGAAATGATCGCTCTTGGCTTGTGTAACATGATTGGATCTTTCGGACAAAGTATGCCAATCACAGGATCATTTACGAGGACGGCCATAAATCATATGTCTGGAGTTGTCACCCCACTGGGAGGTGTCACTAAAGTTCTTTTACTAGTTGTTGCGCTCACATCATTGACTTCAACGTTCTATTACATACCGAAAGCGTCTTTGGCCGGATTGATTATATCAGCAATGTTTTTCATGATCGATTATAAAACAATGCTGCAATTGTGGAGAAACAGCAAAAAAGAACTAGCTATCCTGCTCACGACCACATTTGTTTGTTTATCATTCGGTTTGGAATACGGCATCATAGCTGGAATTATCATCGAAGCCGCTTTGTTACTGCATAGAGTGTCAAGACCCAACCTGGGTGCTAACATAGTGAAATATCAGAAAGGCGATTTGCTTATTGTACCTTTCTCTGAAGATATATCGTATTGTGCCGCTGAACACGTTCGCAGAACAGTCATTAAAGAATCGCAAGAACTATCTGACACAGTAATCGTAATTGATGGTACGAACCTTAAAAACATGGATTTCACGGCTGCTTCCAATTTAGTATTGGTTGTAAAGGAGTTGGACACGAAATCCCTTACAGTAATTATGCTTAATTTTAATTCGACATTGAAGAAATTGTGTGTCGATATTGACAGAAGTACAGAAGACAAATTCGTTTACGCTAAAAACGCTATGGAAATATCAGAAATGAATCCCAGAGACGTACGTAGTAATGTTTAA
Protein
MKTLKKRLPILGWLPNYKPEYFVQDFIAGITVGFTAIPQGIAYAVVAGQSPEHGLYASLTSGVIYVIFGSRYNVTVGPTAILAAMTAKYVSGYSVDFAILTAFVSGVVILLMGVFHLGFLVEFISMPVISGFTTAAALQIAALQLKPFFGLSGSSGNNFTESVQNLIRNFKTMKLYEFLLGSATIIMLMLLKKLGDGCKRTDGLFKKIRWFISLSRNAVVVMVGITVAFVIKIVFDQEPLELIGAIDGGLPKFSWPPFSTVVGNETYNFGDMMGVLGPGFIVLPFVAIMETVAIAKAFAGGAIVDANQEMIALGLCNMIGSFGQSMPITGSFTRTAINHMSGVVTPLGGVTKVLLLVVALTSLTSTFYYIPKASLAGLIISAMFFMIDYKTMLQLWRNSKKELAILLTTTFVCLSFGLEYGIIAGIIIEAALLLHRVSRPNLGANIVKYQKGDLLIVPFSEDISYCAAEHVRRTVIKESQELSDTVIVIDGTNLKNMDFTAASNLVLVVKELDTKSLTVIMLNFNSTLKKLCVDIDRSTEDKFVYAKNAMEISEMNPRDVRSNV

Summary

Similarity
Belongs to the SLC26A/SulP transporter (TC 2.A.53) family.
EMBL
BABH01019037    JTDY01007741    KOB64973.1    ODYU01006956    SOQ49277.1    NWSH01007697    + More
PCG62852.1    KQ459472    KPJ00123.1    KQ461175    KPJ07949.1    JTDY01000476    KOB77005.1    AGBW02012324    OWR45211.1    GFTR01007336    JAW09090.1    GBGD01000935    JAC87954.1    GECL01002483    JAP03641.1    CH477832    EAT35825.1    ODYU01000543    SOQ35478.1    GL451937    EFN78210.1    GFDF01009352    JAV04732.1    GFDL01008117    JAV26928.1    GFDF01009351    JAV04733.1    NNAY01003020    OXU20106.1    ATLV01021319    KE525316    KFB46322.1    GL439905    EFN66636.1    GL888147    EGI66552.1    NWSH01004247    PCG65307.1    KQ976514    KYM82271.1    NNAY01002700    OXU20749.1    AAZX01001196    AAZX01010281    ADMH02000728    ETN65234.1    KZ150001    PZC75311.1    KQ976750    KYN08644.1    ADTU01014484    ADTU01014485    ADTU01014486    ADTU01014487    ADTU01014488    ADTU01014489    GDKW01002824    JAI53771.1    GEZM01058159    JAV71861.1    GEZM01058160    JAV71860.1    ACPB03014185    GDHC01006325    JAQ12304.1    GDHC01003476    JAQ15153.1    KFB46321.1    GECZ01025058    GECZ01004421    JAS44711.1    JAS65348.1    GECU01037002    JAS70704.1    GECZ01021069    GECZ01006625    JAS48700.1    JAS63144.1    JXUM01047217    JXUM01047218    KQ561510    KXJ78346.1    JXUM01049949    JXUM01049950    GECU01031114    GECU01026481    JAS76592.1    JAS81225.1    AAAB01008952    GL434761    EFN74604.1    GGFK01010181    MBW43502.1    KQ982877    KYQ49705.1    GAPW01000485    JAC13113.1    GEBQ01002282    JAT37695.1    GEBQ01010697    JAT29280.1    KQ978538    KYN30256.1    UFQS01000397    UFQT01000397    SSX03619.1    SSX23984.1    DS231819    EDS42809.1    GL452471    EFN77150.1    ETN65233.1    UFQS01004118    UFQT01004118    SSX16183.1    SSX35509.1    KQ971362    KYB25749.1    GFDL01008179    JAV26866.1    APCN01005988    KQ981693    KYN37880.1    GEDC01018755    JAS18543.1    GEDC01019009    JAS18289.1    GEDC01005490    JAS31808.1    KZ288204    PBC33308.1    AXCN02002212    GEDC01002456    JAS34842.1    NEVH01000254    PNF43806.1    GEDC01018210    JAS19088.1    GEDC01010889    JAS26409.1    KZ288400    PBC26293.1    GEDC01018041    JAS19257.1    GEDC01016037    JAS21261.1    GEDC01022794    JAS14504.1    JRES01000835    KNC27930.1    GECU01005439    JAT02268.1    KK854946    PTY19868.1    KQ414619    KOC67754.1    CH916367    EDW02497.1    CH940648    EDW61791.2    GL888613    EGI58998.1   
Pfam
PF00916   Sulfate_transp        + More
PF01740   STAS
PF17906   HTH_48
Interpro
IPR002645   STAS_dom        + More
IPR036513   STAS_dom_sf       
IPR001902   SLC26A/SulP_fam       
IPR011547   SLC26A/SulP_dom       
IPR018045   S04_transporter_CS       
IPR041426   Mos1_HTH       
SUPFAM
SSF52091   SSF52091       
Gene 3D
PDB
5DA0     E-value=1.72486e-09,     Score=151

Ontologies

Topology

Subcellular location
Membrane  
Length:
564
Number of predicted TMHs:
9
Exp number of AAs in TMHs:
216.38764
Exp number, first 60 AAs:
24.58318
Total prob of N-in:
0.51667
POSSIBLE N-term signal
sequence
inside
1  -  25
TMhelix
26  -  48
outside
49  -  62
TMhelix
63  -  85
inside
86  -  96
TMhelix
97  -  119
outside
120  -  174
TMhelix
175  -  192
inside
193  -  212
TMhelix
213  -  235
outside
236  -  271
TMhelix
272  -  294
inside
295  -  340
TMhelix
341  -  363
outside
364  -  366
TMhelix
367  -  389
inside
390  -  401
TMhelix
402  -  424
outside
425  -  564
 
 

Population Genetic Test Statistics

Pi
255.932928
Theta
219.031922
Tajima's D
0.87712
CLR
0
CSRT
0.625768711564422
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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