Silkworm Genome Informatics Database

Gene

KWMTBOMO05938

Annotation

reverse_transcriptase_[Danaus_plexippus]

Location

Bomo_Chr10(+):14923208-14929252 View in EpiBrowser

Location in the cell

Nuclear Reliability : 1.861

CDS

ATGGGGAACGGGGGCTTCTGCCTTTACTGGTCGAAGCCGCGAGGATGCAAACCTCTTCAAAAATGCCCTAATCCCAAGCTCGACACCCGGCGATGGGATGATGAAGGGGGCTGTGCGACGGGCAGCGGAATTCCCGTCGAACCGAGGTGTTCCCCGATCGCCGGCTCGATGCGCTCTGCGCTCGCCAGCGACTCGGGTATAATCAGTCCCACCAAACCATCGGCGGGGAAAAAGAGGGGGAGAAGAAAGACGGCACTACCAATTTCCGATGACAGCTGCGCGTCATCCTCCGGCACTGAGGTGCCGGAAAAGACGATGGCCATCGAGGAGGTGACTCCGGTGGTTCCGGGGCCTGCTACGTCGGAAGACGCGATGCCCGCTCCCCAGTGGGTACCAGTGAGGAGGAGGGGCGCTGTGTCACCAGCGACGTCCGTGGAGTCGATGTCGACGTCGGCCGCGTCCCTGGCTAGCGGGGACGAGACGTTCCGGGACCTCGACCTTGCACTGGTCAACTTGGGCAAGCTGCTGTCGACTGTGGCTGCCAAGGGCGCCGAGCCAGGCAGCAGCTACCGGAAACGGCTCCGGGAGGCAGCCGCTATGGTGAGAACAAGGCTGATCCCCACCATGTCCAAGCTTTATGACTTGGTAGAGAGCCGAGAGGTGGAGAGCAAAGATCTTGTCGCTCATTGTGACTCCAGAGAGAGTCGCATCTCGGGAGATACCCCGGCCTTGCGGGGAGGGACTCCCCTGTTGCCGAGGCCGCCGCTGGCACGCTCTGGCCCCCCCGCGGGGGCGATGGATATTGACGTGCAATTGCGTTCCGCTGTGAGTGTGACGGCGCAAATGCCAGAGCCCAATCCTGTGGCCCCTGTCCCGCTAGCGCCTAGCCCCGCGCTCCCTCGCCCTCCACGTAGGGTCGAGTTAAGGCCTGCGCCGCCTCCGCGGATATCGGCCGCCCCTGCGTCTACACGGAGAGGAAGGCTAAGCCCTGCGCCAGCGCGGGCTGAAGACATCCGTTCGCCACTGGCGAGGATGGTGGATGAGTGGCCGGCGCTACCGCCGCCTCTTTCGCCCTCGCGTGCTGCGGGGTTGCAGGCTCGCGGGCCACACAACACGGCTGCTGGGATGGTAGAGGTGGACTCCCTCCCAAGCAGAGAGGAAATGGTGGCCTGTATCTCGCGGGCGGTGGCGGTTGAGGTCGGCAAGCACTTTGCCGGCCTCGAGGAGATGCTCCGTTCCTCGATTGGTTCCGGAGACTGCATCCCGGCGCCAACAGCCGCAGCCACCCCGCGGAGCCAGGCCGCCCGGCCGACCTCTATCCCCACTCCATCCGCGAGGTTGGCACGGCGTAGAGGCCGGGACCAAAACAACAAGGGTACGGGTGCCCAGAATCCTGCCCCAAAATCCCAACCCCGTCCCCTTCCTGCTCCCCCGTCAAGCATGGACGAGGGCTGGACGGAAGTGGTGAAGCGGGGCAAGAAAGCAAGGCAGCAGACAGCGGCTCTGGCAGCTCCCAGAGGGGGTCGAGCGCCGACCGCTGCAGCACGAAGCACAGAGCTGGCGGCCGTAGCTGCTCCTCGTGAGAATCGAGCACTGGCAGCCAGGAAGAAGAATGGCAAAAAGAAGAGGCCGCGCGCAGCGCGGTCGGCTGCCGTCGTAGTGACGTTGCTGCCGGCCGCCGCCGAAAAGGGCCTCACCTATAATGAGGTGATGGCCCGGGCGCGCGCGGCCGTAAGTTTGGATGAAATCGGGGCAGAGGAGGGCCTCCGCTTCCGGCACACAGCCAATGGAGCGAAGCTGCTGGAGTGTCCCGGTGCCGATAGTTCTGGCATCGCGGACAAACTAGTGGCGACGCTCCGCGTGGCACTGCCGGAGGATGAGGTGCGCGTGCACAGGCCGGTGAGGATGGCCGAGATTAGAATCACCGGCCTGGACGACTGTGCTACCAAGGAGGAGGTGGCAGCCGCGATAGCCGCCCAAGGTGGATGTGCCCTGGAGAGCGTGACCGTGGGCGAACTTCGCTCAGGGTACTCTGGAGCCAGGTCGGTGTGGGCGCGCTGCCCTGTGGAGGCAGCCACTTCCTTGGCCACTCCTCCGCCGGGAAGATCGACGGGGGACCCGGGGAGACTGCGCGTGGGCTGGATAGCGGCCCACGTGCGTCTCCAAGAACCACGTGCCTGGCTATGTCTCCGATGTTTTAGCACCGGGCACGGCCTCGCTAGGTGCACTAGCTCGGTTGACCGCAGCGGTCTGTGTTTCCGCTGCGGCCAGCCGGGCCATAAAGCGGCGTCCTGCACAGCCGCCCCGCACTGCGCTCTGTGCGCTGCGGCCGGGCGCAGGGCAAACCACCGGGCGGGAGGCAAGGCGTGCTTCCCGTCCGGTGATAATACCGAACGCAACCGGCGCCGAAAATCAAAGCGCCGACAAAAGAGAAGGTTGGCCAGAGGAGCACTGGCCAACGCTGTAATCCCCGATGCGGCGCCGGTGCCGGAGGGCGGGGGCAGCGGTGAAGGGGAGGGGGCGATGGATGTGGACATGCTGTCTCAGAGCATGGCGGAGTGGTCCATAGATATGGCTGTGGTCGCCGAGCCGTACTTCGTTCCCCCAGCAAATGATTGTTGGTTTGGGGACGACGGCGGCCTGGCGGCCATAGTCATAAGAAGAGACGCGGCGATCCCCCCCCTGGCGATGGTGACCAGGGGTCAAGGGTTCGTCGCGGTGCAGCTGGAAGGGACCGTCGTGATCGGGGCGTACTTCTCTCCGAATAGGCCTACCGTCGAGTTCGGGCATTTCCTGGGCGGGATCGGGGCGATTGCTCGCCGCCTCGCTCCTCGTCCAGTGATTCTCGCGGGGGACCTCAATGCGAAGTCTGTCGCATGGGGCTCCCCCCGCTCGGACGCTCGTGGTAGGCTAATGGAGAGGTGGGCGCACGCGGCCGGCCTCTGTTTGTTGAATAGAGGTTCGGTTGCGACGTGCGTGCGGTGGCAGGGCGAGTCTATTGTGGACGTTACGTTCGCAAGCCCGGCCATCGCACGCCGTATCCGCGACTGGAGAGTTTTGGAGGGGGCGGAGACGCTGTCAGATCACCGATATATTCGGTTTGATCTCTCCGCCCGCTCCGCAGTCGCGGACGTCCACGGGGACCACCCCCGTGGTGCATCCCGGTCATTCCCCAAGTGGGCACTGAAGCGCCTGAATAAGGCGCTCCTGATGGAAGCCTCTACGGTGGCGGCGTGGGCGCCCATGCGTCCACACCCGGTCGAGGTCGAGGGAGAGGCGGGGTGGTTCCGGGACACGATGCGTCGCATCTGTGATGCGTCGATGCCCCGGATCGGCCCTAGACTCCCTAATCGCCAGGCGTACTGGTGGTCGCCCGAAATTGCGCAACTCCGCGTGGAGTGCGTTCGGGCGAGGCGCGAGTGCGCCAGGCATCGCCGCCGCCGCCTGCCGCGGCGCAACGATCCGGTTGCATTCGCGGCGGCAGAGGCCCGGCTGCACGGCGCATTTCGCGTCGCGCAGAGGGCATTGCAGCTGGCCATCAGAAGAGCCAAGAACCAACACATGGAGGGTCTCTTGGAGACGCTGGATGAGGATCCGTGGGGGCGGCCCTATCATATGGTGCGCAAAAAAATGCGCCCATGGGCCCCCCCGATCACGGAGCGTCTCCAGCCTCAGCAGCTGCGGGACATCGTCTCGGCGCTGTTCCCGCAGGAGCGGGAGGGATTTTTCGCTCCCGCTATGGACGCGCCGCCGGAATACGACGGCGAAGTCCCTGCTGAGGTGCCCCACATAACGGGGGCGGAGCTCCGTGTGGCCGTGCGCAAAATGTGCGCGAAAGACACTGCACCCGGCCCGGACGGCGTGCATGGCCGGGTTTGGGCCTTGGCTCTTGGTGCCCTAGGGGACCGACTCTTGAGGCTTTACAACTCCTGCCTCGAGTCGGGACGGTTTCCTTCATCGTGGAGGACGGGCAGACTCGTGCTGTTGAGAAAGGAGGGGCGCCCGGCGGATACTGCCGCCGGGTACCGTCCCATCGTGTTGCTGGATGAGGTGGGCAAGCTGCTGGAACGCATTCTGGCGGCCCGCATCATCCAGCATCTGGTCAGGGTGGGACCCGATCTGTCGGCGGAGCAGTATGGCTTCCGAGAGGGCCGCTCAACGGTAGACGCGATCCTTCGCGTGCGGGCCCTCTCGGAGGAGGCCGTCTCCAGGGGTGGGGTGGCTTTGGCGGTGTCTCTCGACATCGCCAATGCGTTTAACACCCTGCCCTGGTCCGTGATAGGGGGGGCGCTGGAACGGCACGGAGTGCCCCCCTACCTTCGCCGGCTGGTGGGTTCCTACTTGGAGGACAGATCGGTCACGTGTACCGGACACGGTGGGATCGTGCACCGGTTCCCGGTCGTGCGCGGTGTTCCACAGGGGTCGGTGCTCGGCCCCCTTTTGTGGAATATCGGGTATGACTGGGCCCCGGAGAGTGCCACCTGTCGATGCCCATATCGTGGTTGGAGGCGTCCGGATTGGGGTCGGGGTGCAGTTGAAGTACCTCGGCCTCATTCTGGACAGTCGTTGGACCTTCCGTGCTCATTTTCAGCACCTGGTCCCTCGTTTGTTGGGGGTGGCCGGCGCGTTAAGCCGGCTTCTGCCCAACGTCGGGGGCCTGACCAGGTGACGCGCCGTCTCTATACGGGGGTGGTGCGATCAATGGCCCTATACGGGGCGCCTGTGTGGGGCCAGTCCCTGGCCGCGGGGGTGGCGAAGCTGCTGCAACGGCCGCAACGCACCATCGCGGTCAGGGTCATCCGTGGTTATCGCACCATCTCCTTTGAGGCGGCGTGTGTACTGGCTGGGACGCCGCCTTGGGCTCTGGAAGCGGAGGCGCTCGCCGCTGACTATCAGTGGCGGGCTGACCTTCGCGCCCGGGGCGTGGCGCGTCCCAGCCACAGTGTGGTCAGAGCGCGGAGGGCCCAATCTCGGCGGTCCGTGCTGGAGTCATGGTCCAGGCGGCTGGCTGATCCTTCGGCCGGTCGTAGGACCGTCGAGGCGATTCGCCCGGTCCTTGTGGATTGGGTGAATCGTGACAGAGGACGCCTCACTTTCCGGCTCACGCAGGTGCTCACTGGGCATGGTTGCTTCGGTGAGTTCCTGCACCGGATCAGAGCCGAGCCGACGGCAGAGTGCCACCATTGTGATTGCGACTTGGACACGGCAGAGCATACGCTCGTCGCCTGCCCCGCATGGGAGGGGTGGCGCCGTGTCCTCGTCGCAAAAGTAGGAAACGACTTGTCGTTGCCGAGTGTTGTGGCATCGATGCTCGGCGACGACGAGTCGTGGAAGGCGATGCTCGACTTCTGCGAGTGCACCATCTCGCAGAAGGAGGCGGCGGGGCGCGTGAGAGACGCACAATCCCGCCGCCGTCGAGCGGGGGCCAGGGAGGCGGATTTCGCCCAAGCCCTGGCCCTCTAA

Protein

MGNGGFCLYWSKPRGCKPLQKCPNPKLDTRRWDDEGGCATGSGIPVEPRCSPIAGSMRSALASDSGIISPTKPSAGKKRGRRKTALPISDDSCASSSGTEVPEKTMAIEEVTPVVPGPATSEDAMPAPQWVPVRRRGAVSPATSVESMSTSAASLASGDETFRDLDLALVNLGKLLSTVAAKGAEPGSSYRKRLREAAAMVRTRLIPTMSKLYDLVESREVESKDLVAHCDSRESRISGDTPALRGGTPLLPRPPLARSGPPAGAMDIDVQLRSAVSVTAQMPEPNPVAPVPLAPSPALPRPPRRVELRPAPPPRISAAPASTRRGRLSPAPARAEDIRSPLARMVDEWPALPPPLSPSRAAGLQARGPHNTAAGMVEVDSLPSREEMVACISRAVAVEVGKHFAGLEEMLRSSIGSGDCIPAPTAAATPRSQAARPTSIPTPSARLARRRGRDQNNKGTGAQNPAPKSQPRPLPAPPSSMDEGWTEVVKRGKKARQQTAALAAPRGGRAPTAAARSTELAAVAAPRENRALAARKKNGKKKRPRAARSAAVVVTLLPAAAEKGLTYNEVMARARAAVSLDEIGAEEGLRFRHTANGAKLLECPGADSSGIADKLVATLRVALPEDEVRVHRPVRMAEIRITGLDDCATKEEVAAAIAAQGGCALESVTVGELRSGYSGARSVWARCPVEAATSLATPPPGRSTGDPGRLRVGWIAAHVRLQEPRAWLCLRCFSTGHGLARCTSSVDRSGLCFRCGQPGHKAASCTAAPHCALCAAAGRRANHRAGGKACFPSGDNTERNRRRKSKRRQKRRLARGALANAVIPDAAPVPEGGGSGEGEGAMDVDMLSQSMAEWSIDMAVVAEPYFVPPANDCWFGDDGGLAAIVIRRDAAIPPLAMVTRGQGFVAVQLEGTVVIGAYFSPNRPTVEFGHFLGGIGAIARRLAPRPVILAGDLNAKSVAWGSPRSDARGRLMERWAHAAGLCLLNRGSVATCVRWQGESIVDVTFASPAIARRIRDWRVLEGAETLSDHRYIRFDLSARSAVADVHGDHPRGASRSFPKWALKRLNKALLMEASTVAAWAPMRPHPVEVEGEAGWFRDTMRRICDASMPRIGPRLPNRQAYWWSPEIAQLRVECVRARRECARHRRRRLPRRNDPVAFAAAEARLHGAFRVAQRALQLAIRRAKNQHMEGLLETLDEDPWGRPYHMVRKKMRPWAPPITERLQPQQLRDIVSALFPQEREGFFAPAMDAPPEYDGEVPAEVPHITGAELRVAVRKMCAKDTAPGPDGVHGRVWALALGALGDRLLRLYNSCLESGRFPSSWRTGRLVLLRKEGRPADTAAGYRPIVLLDEVGKLLERILAARIIQHLVRVGPDLSAEQYGFREGRSTVDAILRVRALSEEAVSRGGVALAVSLDIANAFNTLPWSVIGGALERHGVPPYLRRLVGSYLEDRSVTCTGHGGIVHRFPVVRGVPQGSVLGPLLWNIGYDWAPESATCRCPYRGWRRPDWGRGAVEVPRPHSGQSLDLPCSFSAPGPSFVGGGRRVKPASAQRRGPDQVTRRLYTGVVRSMALYGAPVWGQSLAAGVAKLLQRPQRTIAVRVIRGYRTISFEAACVLAGTPPWALEAEALAADYQWRADLRARGVARPSHSVVRARRAQSRRSVLESWSRRLADPSAGRRTVEAIRPVLVDWVNRDRGRLTFRLTQVLTGHGCFGEFLHRIRAEPTAECHHCDCDLDTAEHTLVACPAWEGWRRVLVAKVGNDLSLPSVVASMLGDDESWKAMLDFCECTISQKEAAGRVRDAQSRRRRAGAREADFAQALAL

Uniprot

NA

ProteinModelPortal

NA

PDB

1WDU E-value=1.91903e-10, Score=164

KEGG

101746779 no KO assigned | (RefSeq) predicted GPI-anchored protein 58

GO

GO:0003676 GO:0008270 GO:0016671 GO:0005525 GO:0030131 GO:0005488 GO:0005622 GO:0007264 GO:0008026 GO:0016597

Length:

1820

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0374900000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00002

outside

1 - 1820

Pi

10.727323

Theta

133.793131

Tajima's D

2.786572

CLR

187.809661

CSRT

0.967651617419129

Interpretation

Possibly Balancing Selection

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree