SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO05935
Annotation
reverse_transcriptase_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 3.613
 

Sequence

CDS
ATGGCTCCATTGTCCGACCTTCAAATAAAAATTAATACACTTAGAAGTCGTAAAGAACGATGTTTTAGACGTGTTCAACAATATTACGATCTAGCTAAAGCTGTGCAAAATAATACAGCAGAATTTAGTAATTTGTCTGTGCGGGTCAGTGACCTCGAGTCCACTAGGGAATCTTTCGAAAAAATTGTTGATGAGATTTCAGTTTTGGAGTTAAAAAATGACCCTAATTATATCATCGAAAGCTTAGTCGCTGATTTGCCCAAAAACCCGGATGACGTCATCACTGAACAGATGTTTGTAAATGATTATAAGCGTGATAGTACAGGTCGATACATTGTTAAATACCCGTTTAAGCCTGACTCTGAACTGGGAAACTCAAGGCAAATTGCGATAAAAAGATATCAAAATTTAGAACGTAAACTGTCGCGTTTACCAGACCTACGGAAGGAATATAAAAAATTTATGGATGAGTACGCTTCGCTCGGTCATATGATTTGTGTCGGTGAGGTATCAGAAGTGGAATCAGGGTACGTCATTCCCCACCACTGCGTACATAAGCCTGACAGCAGTAGTACTCGTCTCCGTGTAGTTTTCGACGCGTCTTGTCAAACCTCAAATAATAAATCTTTAAATTCTGTTTTATACACGGGCCCGAAGTTGCAGGCTGATCTCGTGGAACTTTTGATACGTTTTCGGTTACGTAAGATTTCCTTATGCGGTGACATATCTAAAATGTACCGTTGTATTTTAATTGATGAGTCCCAACGTAAATATCAACACATTTTGTGGCGCGACTCGCCCAGTGAGCCCATTAAAGTGTACGAGCTGTGCACCGTGACGTATGGTGTAGCGAGTAGCCCGTTTCTAGCGATACGCACGCTACAGCAGCTAGCCGCGGACGAAGGCGCCCGCTTCCCAGAGGCTTCTCGTGCTCTGCGCGATGGATTTTTTGTGGACGATTTAATTTGGTCTGTGGATAACTTGGAAGAGGCTCTTAAGATTCAGCGGCAATTGGTCGAATTACTGAGGCTTGGTGGATTCGAATTACGCAAGTGGTCAAGTAATAGCGATCAATTACTTAAAGAACTGCCTAGTGATCAAGTTGAGCCCCCAGTGCAATTCGACGACGTTAGGAATGACAGACTCTCCACCCGCAAGGGCGGGACTGTCATTTACTATAGGAGGGCCCTGCACTGCGTCCCTCTCGATACTCCCTCGCTCTTACATATCGAGGCGTCAGTGTGCCGCATCGCGCTGACGGGACACCAGCCGATCGTCATCGCATCCGTATATCTCCCTCCTGACAAACCCCTCCTGAGCAGTGACCTCGAGACACTGCTCGGTATGGGGGACGCGGTCATTCTGGCAGGCGATTTAAATTGCCACCACACTAGGTGGAACTGCCATCGCACGAATGTGAACGGTAGGCGTCTCGACGCGTTCATAGACGACCTCACATTCGAGATATTCAACCCCCCGACCCCCACGTGCTATCCGTACAACGCCGCGCGTCGTCCGAGCACAATAGATCTGGCACTGCTGAGGAACGTAACTCTGCGCTTGCGCTCCATCGAGGCAATGTCAGAACTCGACTCAGACCACCGACCTGTCGTCATGCAGCTCGGTCGCCCACTCAACCGCGAACCAGATACGAGGACCATGGTGGATTGGAAGAAGCTGGGCACGTGCTTAGCTGACACCGCTCCACCAATCCTCCCTTGCGGCCCGGATTCAACTCCATCCCCCGAGGACACCGTCGAATCCATAAATATCTTCACTGATCACGTCTCGACGGCGATCACAAGATCTTCAAAGCAAGTTGATGTGGAGGACTGCTTCCACCGCATCAGACTTTCCCCCGATCTTAGGGACCTCGTTAGAGTTAGGAACGCGGCAATCCGGGCCTACGATCGATATCCCACGGATTCAAACCGGACTCGGATGCGTCGCTTACAGCGGGAGGTCAAATCCCGCTTGAGCGACGCCCGAAACGAAAACTGGGATAGTTATTTAAAAGAACTCGCGCCCACTCACCAAGCATACTGGCGACTAGCTAGGACCCTCAAGTCCGAAACTATCGTCACTATGCCGCCTCTCGTACGCCCCTCAGGCCAATCACCGGCTTACGATGACGATGACAAGGCAGAGTTGCTGGCCGATGCACTGCAAGAGCAGTGCACCACCAGCACTCAACACGCGGACCCCGAACACACCGAGTTCGTCGACAGGGAGGTCGAGCGCAGAGCTTCCCTGCCGCCCTCGGACGCGTTACCCCCCATTACCACTTCCGAGGTCAAGGAGGCGATCGATAGCCTGCAACCACGGAAAGCTCCCGGCTCCGACGGCATCCGCAACCGCGCGCTTAAACTGTTACCAGCCCAACTGATAACGATGTTGGCCACCATATTAAATGCTGCTATGACGAACTGCATCTTTCCCGCGGCGTGGAAAGAAGCGGACGTTATCGGCATACACAAGCCGGGCAAACCGAAGAACGAAACCGCGAGTTACCGCCCCATCAGTCTCCTCCCGGCGATAGGCAAACTATACGAACGGCTCCTTCGTAAACGCCTCTGGGACTTCGTATCCGCGAATAAAATTCTTATAGACGAGCAGTTTGGATTCCGCGCCAGACACTCGTGCGTCCATCAAGTGCACCGCCTCACGGAGCTCATCTTACTAGGGCTGAACAGGCGGAAACCCATTCCGACAGGAGCCCTCTTCTTCGATATAGCGAAGGCGTTCGACAAAGTCTGGCACAACGGTTTGATATACAAACTGTATAACATGGGAGTGCCAGACAGACTCGTGCTCATCATACGAGACTACTTGTCGAACCGTTCGTTCCGATATCGAGTCGAGGGAACGCGTTCCCGGCCCCGTCACGTCACAGCCGGAGTCCCGCAAGGCTCCGCCCTCTCCCCGTTACTATTCAGTTTGTATATCAACGATATACCCCGGTCTCCGGAGACCCATCTGGCGCTCTTCGCCGATGACACCGCCATCTACTACTCGTGTAGGAAGAAGGCGTTGCTTCATCGACGACTTCAGACCGCAGCTACCACCATGGGACAGTGGTTCCGGAAGTGGCGCATCGACATCAACCCCACGAAAAGCACAGCGGTGCTCTTTAAAAGGGGTCGCCCTCCGAACACCACGCTGAGCATCCCCCTCCCGACTAGGCGCGTCAATAACCCCGCCCCCGCCGTTCGCCCAATCACGATGTTCGACCAGCCCATACCGTGGGCCCCGAAGGTCAAATATTTAGGCGTCACCCTCGACAGTAGGATGACATTCCGCCCCCACATCAAGACGGTACGCGACCGTGCCGCCTTCATTCTAGGACGTCTCTACCCGATGATATGTAGGCGAAGTAAAATGTCCCTTAGAAATAAGGTGACACTCTACAAAACTTGCATACGCCCCGTCATGACCTATGCAAGTGTAGTGTTCGCTCACGCGGCCCGCATACACTTAAAATCATTCCAAGTCATTCAATCCCGTTTTTGCAGGATAGCCGTCGGAGCCCCGTGGTTCGTCAGGAACGTCGACCTCCATGACGACCTGGACTTAGAGTCCACCAGTAAGTATATGCAGTCGGCGTCAATGCGCCACTTCGATAAAGCGGCACGACACGAGAACCCTCTCATCGTGGCCGCCGGCAACTACATTCCCGATCCTGCGGACAGTATGGAAAGCAGTCGACGTCGCCCAAAACACGTCATCTCGGATCCTCCCGATCCACTAACGGTGCTTCTAGGGTTCTCGATTTGA
Protein
MAPLSDLQIKINTLRSRKERCFRRVQQYYDLAKAVQNNTAEFSNLSVRVSDLESTRESFEKIVDEISVLELKNDPNYIIESLVADLPKNPDDVITEQMFVNDYKRDSTGRYIVKYPFKPDSELGNSRQIAIKRYQNLERKLSRLPDLRKEYKKFMDEYASLGHMICVGEVSEVESGYVIPHHCVHKPDSSSTRLRVVFDASCQTSNNKSLNSVLYTGPKLQADLVELLIRFRLRKISLCGDISKMYRCILIDESQRKYQHILWRDSPSEPIKVYELCTVTYGVASSPFLAIRTLQQLAADEGARFPEASRALRDGFFVDDLIWSVDNLEEALKIQRQLVELLRLGGFELRKWSSNSDQLLKELPSDQVEPPVQFDDVRNDRLSTRKGGTVIYYRRALHCVPLDTPSLLHIEASVCRIALTGHQPIVIASVYLPPDKPLLSSDLETLLGMGDAVILAGDLNCHHTRWNCHRTNVNGRRLDAFIDDLTFEIFNPPTPTCYPYNAARRPSTIDLALLRNVTLRLRSIEAMSELDSDHRPVVMQLGRPLNREPDTRTMVDWKKLGTCLADTAPPILPCGPDSTPSPEDTVESINIFTDHVSTAITRSSKQVDVEDCFHRIRLSPDLRDLVRVRNAAIRAYDRYPTDSNRTRMRRLQREVKSRLSDARNENWDSYLKELAPTHQAYWRLARTLKSETIVTMPPLVRPSGQSPAYDDDDKAELLADALQEQCTTSTQHADPEHTEFVDREVERRASLPPSDALPPITTSEVKEAIDSLQPRKAPGSDGIRNRALKLLPAQLITMLATILNAAMTNCIFPAAWKEADVIGIHKPGKPKNETASYRPISLLPAIGKLYERLLRKRLWDFVSANKILIDEQFGFRARHSCVHQVHRLTELILLGLNRRKPIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQGSALSPLLFSLYINDIPRSPETHLALFADDTAIYYSCRKKALLHRRLQTAATTMGQWFRKWRIDINPTKSTAVLFKRGRPPNTTLSIPLPTRRVNNPAPAVRPITMFDQPIPWAPKVKYLGVTLDSRMTFRPHIKTVRDRAAFILGRLYPMICRRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARIHLKSFQVIQSRFCRIAVGAPWFVRNVDLHDDLDLESTSKYMQSASMRHFDKAARHENPLIVAAGNYIPDPADSMESSRRRPKHVISDPPDPLTVLLGFSI

Summary

Pfam
PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
Interpro
IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
SUPFAM
SSF56219   SSF56219       
Gene 3D
PDB
6AR3     E-value=0.00358854,     Score=100

Ontologies

Topology

Length:
1257
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.29887
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00004
outside
1  -  1257
 
 

Population Genetic Test Statistics

Pi
295.088491
Theta
166.117632
Tajima's D
-1.013325
CLR
246.242891
CSRT
0.137393130343483
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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