Gene

KWMTBOMO05930

Pre Gene Modal

BGIBMGA002792

Annotation

PREDICTED:_23_kDa_integral_membrane_protein-like_[Amyelois_transitella]

Location

Bomo_Chr10(+):14569035-14572702      View in EpiBrowser

Full name

Tetraspanin      

Location in the cell

PlasmaMembrane   Reliability : 4.919

CDS

ATGGGTCTCTCGACGAACTGTTGGAAATATTTAGTGTTAACTTTTAATGTATTATTCGCTATGTCAGCTGTGGTGCTGTTCGGAGCGAGTGGATTTTTGTTGTACAAACTTTTTATATACAGACATTTTATTGGTGTGAATGTGGAGTATCCCGCGATTCTATTATTGATGATGGCGATCATAACATGTTCTATAGCATGGATAGGATGGAGGACGGCTGTATCATTGCACCAGATTCACATTATCATAACCGGAATCCTAATAGTACTAGTGGTGATCATAGAGTTCACTTGCTTTGTGTGGGCTATGGTGGTGTGGGACAATGTGGAGATAGACGTGAAAACTACCATGACGCAGTTCTTCGAAGACACCAGGGGTGCTGATGCAAATTCCGCTGAGTCCTTAAAATGGGATCGGTTACATGTAAAGTTCGAATGCTGTGGGGTCACAGGGCCAAATGATTACGCGACATCAGGCCACGTACCGTTCTCTTGTTGTGGCCAAGGTCCTCTCGATTCCCTACACAAGCCCTACGCATCAGAATGCGCCGCGTTATATCTCAGGGGGTGCGGAAAGCAGTTACACGAATACACAAGGCAACAGTTGATGCTTGTGTCCATGACAGCATTATGTGCTTCTATAATACAGGTCAGTGATTCTTCATAG

Protein

MGLSTNCWKYLVLTFNVLFAMSAVVLFGASGFLLYKLFIYRHFIGVNVEYPAILLLMMAIITCSIAWIGWRTAVSLHQIHIIITGILIVLVVIIEFTCFVWAMVVWDNVEIDVKTTMTQFFEDTRGADANSAESLKWDRLHVKFECCGVTGPNDYATSGHVPFSCCGQGPLDSLHKPYASECAALYLRGCGKQLHEYTRQQLMLVSMTALCASIIQVSDSS

Similarity

Belongs to the tetraspanin (TM4SF) family.

Feature

chain  Tetraspanin

Uniprot

H9IZV7   A0A2H1WW79   A0A194Q536   A0A212EWX6   A0A194QRI0   A0A0L7KL84   + More
A0A0M8ZSC1   A0A3L8DMJ5   E2B228   A0A087ZPN2   R4UWK8   A0A151HY10   E2BYU6   A0A1L8DK50   A0A1B0GKM1   A0A139WC88   A0A0B7B6P4   D6X0S1   F4WBD1   A0A3S1CB08   A0A336LV88   A0A0L7R079   A0A0T6B7E1   A0A1Y1L9E2   Q9UAI4   D6X0S0   B4QB12   B4PA87   B3NPU3   A0A1W4V1I5   A0A026W8U6   E2B224   A0A0J9U9M7   B4I8V1   O76137   A0A0B4KFZ4   A0A2P8Z111   K7ISS9   B4J637   A0A0L0CN39   A0A3B0JKU2   A0A232EQ19   A0A151X9P2   A0A0B5H7U5   B4KR28   E9J9S5   B4LNX9   B4KMD4   A0A336KBV0   A1Z8K7   A0A154PEP8   A0A0A1XGN8   A0A1W4XT51   Q28Y97   A0A0A1WG71   B4MRP5   B4GCX5   A0A3B0JKK8   B4J8Z2   B3MCL3   B4LQ51   A0A0M3QVL7   A0A034WD08   A0A0K8WBF2   Q292R4   B4P651   A0A1Y1L4G1   B3NSG4   B4GCW3   A0A0J9TZ20   A0A158NAZ0   A0A1W4UI67   A0A0K8U9Z7   A0A0B7B361   A0A1B0G7D6   A0A151JZ20   E2BYV0   B4MQJ7   W8BXV6   U5EPZ8   B3MFB3   A0A1B6HCW8   A0A1B6HHR4   A0A1B6GIS6   R7VH74   A0A1B6E2I7   A0A182RV02   A0A1B6FPI6   A0A1I8QDE5   A0A1I8MII5   A0A1B6MCQ8   A0A1B6KDN1   A0A1J1HME0   A0A093BIZ4   A0A084W472   A0A182FCW0   A0A182WME0   B4QBK7   A0A336LXB9  

Pubmed

19121390    26354079    22118469    26227816    30249741    20798317    + More
18362917    19820115    21719571    28004739    10191082    17994087    17550304    24508170    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    29403074    20075255    26108605    28648823    21282665    25830018    15632085    25348373    21347285    24495485    23254933    25315136    24438588   

EMBL

BABH01019070    BABH01019071    ODYU01011526    SOQ57308.1    KQ459472    KPJ00115.1    + More
AGBW02011867    OWR46000.1    KQ461175    KPJ07944.1    JTDY01009125    KOB64077.1    KQ435878    KOX69967.1    QOIP01000006    RLU21536.1    GL445031    EFN60284.1    KC740862    AGM32686.1    KQ976739    KYM75628.1    GL451531    EFN79118.1    GFDF01007242    JAV06842.1    AJWK01030695    KQ971371    KYB25527.1    HACG01040930    CEK87795.1    KQ971372    EFA09563.1    GL888062    EGI68487.1    RQTK01000099    RUS87841.1    UFQT01000211    SSX21750.1    KQ414672    KOC64232.1    LJIG01009483    KRT82989.1    GEZM01061859    JAV70282.1    AB010263    BAA32691.1    EFA09564.2    CM000362    EDX08449.1    CM000158    EDW92413.1    CH954179    EDV56884.1    KK107324    EZA52517.1    RLU21332.1    EFN60280.1    CM002911    KMY96145.1    CH480824    EDW57026.1    AE013599    BT072819    AB010261    AAF47085.1    ACN62422.1    BAA32686.1    AGB93689.1    PYGN01000247    PSN50197.1    AAZX01003292    CH916367    EDW01895.1    JRES01000160    KNC33725.1    OUUW01000001    SPP73856.1    NNAY01002867    OXU20422.1    KQ982365    KYQ57105.1    KJ535125    AJF38198.1    CH933808    EDW10384.2    GL769399    EFZ10455.1    CH940648    EDW61148.1    EDW09822.2    UFQS01000047    UFQT01000047    SSW98550.1    SSX18936.1    AAM68735.1    KQ434889    KZC10346.1    GBXI01003733    JAD10559.1    CM000071    EAL26068.1    GBXI01016899    JAC97392.1    CH963850    EDW74784.1    CH479181    EDW31513.1    SPP73161.1    EDW01341.1    CH902619    EDV36247.2    EDW61336.1    CP012524    ALC42613.1    GAKP01006771    GAKP01006770    JAC52182.1    GDHF01004139    JAI48175.1    EAL24797.3    EDW90926.1    GEZM01065070    JAV68572.1    EDV56466.1    EDW32526.1    KMY92995.1    ADTU01010579    ADTU01010580    ADTU01010581    GDHF01028840    JAI23474.1    HACG01040929    CEK87794.1    CCAG010021559    KQ981451    KYN41611.1    EFN79122.1    EFN79123.1    CH963849    EDW74386.1    GAMC01002393    JAC04163.1    GANO01003500    JAB56371.1    EDV35587.1    GECU01035122    GECU01005586    JAS72584.1    JAT02121.1    GECU01033473    JAS74233.1    GECZ01007431    JAS62338.1    AMQN01004639    KB294061    ELU15050.1    GEDC01031511    GEDC01024465    GEDC01019324    GEDC01018344    GEDC01005153    GEDC01000862    JAS05787.1    JAS12833.1    JAS17974.1    JAS18954.1    JAS32145.1    JAS36436.1    GECZ01017644    JAS52125.1    GEBQ01006270    JAT33707.1    GEBQ01030408    JAT09569.1    CVRI01000004    CRK87622.1    KN126010    KFU85818.1    ATLV01020284    KE525297    KFB45016.1    EDX06624.1    UFQT01000279    SSX22696.1   

Proteomes

UP000005204    UP000053268    UP000007151    UP000053240    UP000037510    UP000053105    + More
UP000279307    UP000000311    UP000005203    UP000078540    UP000008237    UP000092461    UP000007266    UP000007755    UP000271974    UP000053825    UP000000304    UP000002282    UP000008711    UP000192221    UP000053097    UP000001292    UP000000803    UP000245037    UP000002358    UP000001070    UP000037069    UP000268350    UP000215335    UP000075809    UP000009192    UP000008792    UP000076502    UP000192223    UP000001819    UP000007798    UP000008744    UP000007801    UP000092553    UP000005205    UP000092444    UP000078541    UP000014760    UP000075900    UP000095300    UP000095301    UP000183832    UP000030765    UP000069272    UP000075920   

PRIDE

H9IZV7    Q9UAI4    O76137    A1Z8K7   

Pfam

PF00335   Tetraspanin        + More
PF03828   PAP_assoc

Interpro

IPR018499   Tetraspanin/Peripherin        + More
IPR008952   Tetraspanin_EC2_sf       
IPR000301   Tetraspanin       
IPR018503   Tetraspanin_CS       
IPR002058   PAP_assoc       

SUPFAM

SSF48652   SSF48652       

Gene 3D

1.10.1450.10    

ProteinModelPortal

H9IZV7   A0A2H1WW79   A0A194Q536   A0A212EWX6   A0A194QRI0   A0A0L7KL84   + More
A0A0M8ZSC1   A0A3L8DMJ5   E2B228   A0A087ZPN2   R4UWK8   A0A151HY10   E2BYU6   A0A1L8DK50   A0A1B0GKM1   A0A139WC88   A0A0B7B6P4   D6X0S1   F4WBD1   A0A3S1CB08   A0A336LV88   A0A0L7R079   A0A0T6B7E1   A0A1Y1L9E2   Q9UAI4   D6X0S0   B4QB12   B4PA87   B3NPU3   A0A1W4V1I5   A0A026W8U6   E2B224   A0A0J9U9M7   B4I8V1   O76137   A0A0B4KFZ4   A0A2P8Z111   K7ISS9   B4J637   A0A0L0CN39   A0A3B0JKU2   A0A232EQ19   A0A151X9P2   A0A0B5H7U5   B4KR28   E9J9S5   B4LNX9   B4KMD4   A0A336KBV0   A1Z8K7   A0A154PEP8   A0A0A1XGN8   A0A1W4XT51   Q28Y97   A0A0A1WG71   B4MRP5   B4GCX5   A0A3B0JKK8   B4J8Z2   B3MCL3   B4LQ51   A0A0M3QVL7   A0A034WD08   A0A0K8WBF2   Q292R4   B4P651   A0A1Y1L4G1   B3NSG4   B4GCW3   A0A0J9TZ20   A0A158NAZ0   A0A1W4UI67   A0A0K8U9Z7   A0A0B7B361   A0A1B0G7D6   A0A151JZ20   E2BYV0   B4MQJ7   W8BXV6   U5EPZ8   B3MFB3   A0A1B6HCW8   A0A1B6HHR4   A0A1B6GIS6   R7VH74   A0A1B6E2I7   A0A182RV02   A0A1B6FPI6   A0A1I8QDE5   A0A1I8MII5   A0A1B6MCQ8   A0A1B6KDN1   A0A1J1HME0   A0A093BIZ4   A0A084W472   A0A182FCW0   A0A182WME0   B4QBK7   A0A336LXB9  

KEGG

NA   

GO

GO:0016021   GO:0005887   GO:0016192   GO:0030117   GO:0005525   GO:0030131   GO:0005488   GO:0005622   GO:0007264   GO:0008026   GO:0016597  

Subcellular location

Membrane  

Length:

221

Number of predicted TMHs:

3

Exp number of AAs in TMHs:

70.19591

Exp number, first 60 AAs:

35.10753

Total prob of N-in:

0.49533

POSSIBLE N-term signal

sequence

inside

1  -  12

TMhelix

13  -  35

outside

36  -  49

TMhelix

50  -  69

inside

70  -  81

TMhelix

82  -  104

outside

105  -  221

 

 

Pi

366.609785

Theta

238.670253

Tajima's D

1.688388

CLR

0.212353

CSRT

0.825758712064397

Interpretation

Uncertain