Silkworm Genome Informatics Database

Gene

KWMTBOMO05928 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA002914

Annotation

adaptor_protein_complex-1_gamma_subunit_[Bombyx_mori]

Location

Bomo_Chr10(-):14524974-14561024 View in EpiBrowser

Full name

AP-1 complex subunit gamma

Location in the cell

Cytoplasmic Reliability : 1.03 Golgi Reliability : 1.458

CDS

ATGTACACTTTACTGCACGGCTTTTATAAGTATATAATACAGAAAGACGAATATTGCGTTCTAATACTCGGCCTAGACAATGCTGGCAAAACGACATATTTGGAAGCAACGAAAACAAAATTTACCAAAAAATATAAGGCTATGAACCCAAATAGGATAACAACAACCGTCGGACTTAATATAGGTAAAATAGATGTGAACGGTGTAAGACTTAATTTCTGGGACCTTGGTGGTCAGCAAGAATTACAATCCCTATGGGATAAGTACTATGCTGAATGCCATGCAGTAATCTACATAGTTGACTCATCAGATAGGGACAGGGTATCTGAATCCAAGGAAACCTTTGATAGAATGATATCCTCAGAACATTTAGCCGGTGTACCTTTGCTGGTGCTTGCGAACAAACAAGACATTCCAGACTGCATGGGCGTCCACACAGTGAAGCCCATATTCAATCAGAACGCACACCTGATTGGTGCTAGGGACATCATGTTAATGGCAACATCGGCATTAACTGGTGATGGCGTGGACGAAGGCATCCGATGGCTTGTAGACTGCATAAAACGCAACAGCGTCGATCGTCCTCCCCAGAAACAACTAGAAGAGTACGAGATGAACGGCTCCGAATCTGGGTTCAACCCGGCCTTCAACATTGCCACTATCAAGCAAGTGGTAAACGAGGCCATAGAGAGAGTGCGGATGCCGACACCGACCCGACTCAGGGATCTTATAAGGCAAATCAGAGCCGCTAGGACCGCCGCAGAAGAACGAAGCGTCGTCAACAAGGAATGCGCCTACATTAGGTCTACGTTCAGAGAAGAAGACAGCGTCTGGAGATGTCGCAACATTGCCAAGCTCCTGTACATCCACATGCTGGGTTATCCGGCCCATTTCGGTCAGCTGGAGTGCCTAAAGCTGATCGCAAGTCCTCGATTCACGGACAAACGAGTCGGCTACCTCGGCGCGATGCTGCTTCTGGACGAACGCCAAGATGTCCATCTCCTCATCACGAACTGCTTAAAGAACGACCTCAACAGCAACACACAGTTCGTGGTCGGGCTCGCGCTGTGCACCCTCGGAGCCATAGCCTCGCCGGAGATGGCCAGGGATTTGGCTTCGGAAGTGGAGCGTCTGATAAAGTCACCGAACGCCTACATAAAGAAGAAGGCGGCGCTTTGCGCGTTCAGGATCATCAGGAGAGTACCAGATTTAATGGAGATGTTCTTGCCGGCCACTAGAAGTCTACTTACCGAAAAGAATCATGGTGTCCTCATAACAGGCGTTACACTTATCACCGAAATGTGTGAGAACAGTCCCGACACGCTTAATCATTTCAAAAAGATCGTTCCTAATCTGGTGAGGATATTAAAGAATCTGATACTGGCCGGATATTCTCCGGAACATGACGTCAGCGGCGTATCCGATCCGTTCCTGCAGGTGAAGATACTGCGTCTGCTGCGGATACTGGGCAAGAACGACGCCGAAGCTTCGGAGGCGATGAACGACATATTGGCCCAGGTGGCCACCAACACGGAGACCAGCAAGAACGTCGGCAACACCATCCTGTACGAGACGGTGCTGTCGATAATGGACATCAAGTCCGAGAGCAGCCTCAGGGTGTTGGCCGTCAACATCCTGGGGAGGTTCCTGCTGAACAACGACAAGAACATCCGCTACGTCGCGCTCAACACGCTGCTGAGGACCGTGCACGTCGACACCTCGGCCGTGCAGAGGCACCGGACCACCATCCTCGAGTGTCTCAAGGACCCGGACATCTCGATCCGGCGACGCGCCATGGAGCTGTCGTTCGCGCTGGTGAACGGGCAGAACATCCGCGGCATGATGAAGGAGCTGCTGGCGTTCCTGGAGCGCAGCGACGCCGAGTTCAAGGCGCACTGCTCCAGCGCCGTGGTGCTCGCCGCCGAGCGGTACGCGCCCTCCGACAAGTGGCACCTCGACACGCTCTTCAAGGTCCTGCTCAAGGCTGGCAACTACTTACGAGACGACACGGTGTCGAGCACGATACAGATCATATCGTCAGCGGCGACGGAGCGTCAGGCGTACGGCGCCATGCGACTGTGGACTTCACTGGAACAGTCGGCTGTCTCGGGACTTGCCACAGAGAAACAACCTTTAATCCAGGTTGCCGCTTGGACTATTGGTGAATATGGAGATTTGTTAGTATCGGAAGCCAGCAGCGCTATCTCTATGGTGGATGAAGACGGTGTCGATGATTTTGTGCGACCGACTGAAGAATACGTGATTGACATATATCAGAAGCTGCTTTGGTCCACGCAGCTCTCGATCAGCACTAAAGAGTTCCTCTTACTTTCTTTGGCCAAACTGTCGACCAGATTCACCACGCAAGCCAGTCAGGAAAAAATAAGAGTGATCATAGACACGTTCGGATCTCACATCCACATCGAACTGCAGCAGCGAGGAGTTGAACTATCCCAACTCTTTAGACAATACGGGCACCTCCGACCCGCGCTGCTGGAGCGCATGCCCGCCATGGAGCCCGTCGCCGCGCCGCACCGCGACGAGCAGGAGCTCGATCTCAGCGACACCAGCCCTGACCACACTAAGCCTGACCAGGACGCCTTATTGGACTTGATCAACGGGTCTGATTCGTTGACGAACGGAGATGTGGAACACCAGCCTGAACAAATCGCTACCACCAACAATAATACTAGCAGTAATGACATCTTAGACTTGCTGAGCGGTCTAGATCTAACTCCGAGTGTACCCGCCGCCGCGCCCGCCGTGCTGCTCGCCAACAACAACGTGGAGCCGAGCGCCGCGCCCGCCGCGCTGCTGCTGGACGGGCTGTTCGCGCCGCCCGCGACCCCCCAACCCCCCCACCCGGCCGACGCTAATGAACGTAATGCGGCAGGGGCGGAGTGGGAGCGCGCGGTGCTGGAGCGCGGCGGCGTGCGCGTGTGCGTGTCGGCGCGGCGCGCGGCGGGCGCGGCGGCCACGCTCACGGCGCGCGCCACGTCGCAGCTGCACACGCTCACAGACTTCCTGTTCCAGGCCGCCGTGCCGAAGAAAATCCAGTTGGATATGATGTCTCCATCCGGTACGACGCTGTCGCCGCAGGGAGAGATCACGCAGGTGCTCAAAGTTACCAACCCGACCAAGACCCCGCTTCGGCTGCGGATAAGGGTGTCTTACAACATTGATGGCACCCCGGTATTGGAACAGACGGAGATCAACAATTTCCCGGCCGACCTGTTCAACTGA

Protein

MYTLLHGFYKYIIQKDEYCVLILGLDNAGKTTYLEATKTKFTKKYKAMNPNRITTTVGLNIGKIDVNGVRLNFWDLGGQQELQSLWDKYYAECHAVIYIVDSSDRDRVSESKETFDRMISSEHLAGVPLLVLANKQDIPDCMGVHTVKPIFNQNAHLIGARDIMLMATSALTGDGVDEGIRWLVDCIKRNSVDRPPQKQLEEYEMNGSESGFNPAFNIATIKQVVNEAIERVRMPTPTRLRDLIRQIRAARTAAEERSVVNKECAYIRSTFREEDSVWRCRNIAKLLYIHMLGYPAHFGQLECLKLIASPRFTDKRVGYLGAMLLLDERQDVHLLITNCLKNDLNSNTQFVVGLALCTLGAIASPEMARDLASEVERLIKSPNAYIKKKAALCAFRIIRRVPDLMEMFLPATRSLLTEKNHGVLITGVTLITEMCENSPDTLNHFKKIVPNLVRILKNLILAGYSPEHDVSGVSDPFLQVKILRLLRILGKNDAEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESSLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVHVDTSAVQRHRTTILECLKDPDISIRRRAMELSFALVNGQNIRGMMKELLAFLERSDAEFKAHCSSAVVLAAERYAPSDKWHLDTLFKVLLKAGNYLRDDTVSSTIQIISSAATERQAYGAMRLWTSLEQSAVSGLATEKQPLIQVAAWTIGEYGDLLVSEASSAISMVDEDGVDDFVRPTEEYVIDIYQKLLWSTQLSISTKEFLLLSLAKLSTRFTTQASQEKIRVIIDTFGSHIHIELQQRGVELSQLFRQYGHLRPALLERMPAMEPVAAPHRDEQELDLSDTSPDHTKPDQDALLDLINGSDSLTNGDVEHQPEQIATTNNNTSSNDILDLLSGLDLTPSVPAAAPAVLLANNNVEPSAAPAALLLDGLFAPPATPQPPHPADANERNAAGAEWERAVLERGGVRVCVSARRAAGAAATLTARATSQLHTLTDFLFQAAVPKKIQLDMMSPSGTTLSPQGEITQVLKVTNPTKTPLRLRIRVSYNIDGTPVLEQTEINNFPADLFN

Similarity

Belongs to the adaptor complexes large subunit family.

Uniprot

I6W7L0 H9J079 A0A3S2NQF4 A0A194Q3K5 A0A2H1WVG5 A0A232F708 + More
A0A1B0CHL2 A0A2P8Z9W7 A0A182ICJ2 A0A182VBF8

Pubmed

19121390 26354079 28648823 29403074

EMBL

JQ824200 AFN25814.1 BABH01019072 BABH01019073 BABH01019074 RSAL01000147 + More
RVE45858.1 KQ459472 KPJ00112.1 ODYU01011324 SOQ56997.1 NNAY01000768 OXU26611.1 AJWK01012454 PYGN01000132 PSN53284.1 APCN01000802

Proteomes

UP000005204 UP000283053 UP000053268 UP000215335 UP000092461 UP000245037 + More
UP000075840 UP000075903

PRIDE

I6W7L0 H9J079

Pfam

PF01602   Adaptin_N        + More
PF02883   Alpha_adaptinC2
PF00025   Arf
PF02201   SWIB

Interpro

IPR016024   ARM-type_fold        + More
IPR008153   GAE_dom
IPR017107   AP1_complex_gsu
IPR013041   Clathrin_app_Ig-like_sf
IPR002553   Clathrin/coatomer_adapt-like_N
IPR008152   Clathrin_a/b/g-adaptin_app_Ig
IPR011989   ARM-like
IPR017104   AP2_complex_asu
IPR027417   P-loop_NTPase
IPR005225   Small_GTP-bd_dom
IPR006689   Small_GTPase_ARF/SAR
IPR036885   SWIB_MDM2_dom_sf
IPR019835   SWIB_domain
IPR003121   SWIB_MDM2_domain

SUPFAM

SSF49348   SSF49348        + More
SSF48371   SSF48371
SSF52540   SSF52540
SSF47592   SSF47592

Gene 3D

1.25.10.10 1.10.245.10

ProteinModelPortal

I6W7L0 H9J079 A0A3S2NQF4 A0A194Q3K5 A0A2H1WVG5 A0A232F708 + More
A0A1B0CHL2 A0A2P8Z9W7 A0A182ICJ2 A0A182VBF8

PDB

6DFF E-value=0, Score=2070

KEGG

101742239 K12391 AP-1 complex subunit gamma-1 | (RefSeq) AP1G; AP-1 complex subunit gamma-1

PATHWAY

04142 Lysosome - Bombyx mori (domestic silkworm)

GO

GO:0016192 GO:0030121 GO:0006886 GO:0005794 GO:0031410 GO:0016020 GO:0030122 GO:0005525 GO:0035615 GO:0072583 GO:0030117 GO:0030131 GO:0005488 GO:0005622 GO:0007264 GO:0008026 GO:0016597

Subcellular location

Cytoplasm

Length:

1080

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01446

Exp number, first 60 AAs:

0.00221

Total prob of N-in:

0.00064

outside

1 - 1080

Pi

294.587319

Theta

184.302554

Tajima's D

1.727762

CLR

0.233528

CSRT

0.834908254587271

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics