Gene

KWMTBOMO05922

Pre Gene Modal

BGIBMGA002917

Annotation

protein_lin-7_homolog_C_[Papilio_xuthus]

Location

Bomo_Chr10(-):14416969-14417905      View in EpiBrowser

Full name

Protein lin-7 homolog      

Location in the cell

Cytoplasmic   Reliability : 2.054 Mitochondrial   Reliability : 2.073

CDS

ATGACTACCACTGGCGAACAGTTAACGTTAGCTAGGGATATAAAACGTGCCATTGAATTACTCGAGAAACTGCAACAGAGTGGCGAAGTCCCTGCAACGAAATTAGCTGCTCTCCAGAAAGTTTTGCAGAGCGACTTTCTAAATGCCGTAAGAGAGGTTTACGAGCACGTCTACGAGACTGTAGACATACAAGGCTCCGCAGACATAAGAGCTTCCGCAACTGCAAAGGCAACGGTGGCCGCATTTGCTGCTGCAGAAGGACACGCTCACCCTCGAGTAGTGGAACTGCCGAAAACTGAGGAAGGCTTAGGGTTCAACGTAATGGGCGGAAAAGAACAAAATTCTCCGATTTATATATCTAGGATAATACCGGGCGGAGTTGCTGACAGACATGGTGGCTTGAAGAGGGGTGATCAACTTTTATCCGTTAACGGAGTCTCAGTTGAAGGCGAGAATCACGAGAAAGCCGTAGAACTTCTGAAGCAAGCCGTGGGATCCGTAAAATTAGTTGTCAGGTACACACCAAAGGTCTTGGAGGAAATGGAGATGAGATTCGACAAGCAAAGAACTACACGGCGACGCCAAAACTACAACTAA

Protein

MTTTGEQLTLARDIKRAIELLEKLQQSGEVPATKLAALQKVLQSDFLNAVREVYEHVYETVDIQGSADIRASATAKATVAAFAAAEGHAHPRVVELPKTEEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGENHEKAVELLKQAVGSVKLVVRYTPKVLEEMEMRFDKQRTTRRRQNYN

Description

Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells.

Similarity

Belongs to the lin-7 family.

Uniprot

H9J082   A0A3S2NF26   A0A2H1WWF0   A0A212F0B4   A0A194QRG8   I4DKU1   + More
A0A1E1WAJ5   A0A194Q9L9   A0A0L7KWR0   A0A067RAA3   A0A0T6AWR3   A0A084WEA9   A0A1I8PFL9   T1PFI0   A0A182YEE2   A0A2M4AX28   A0A2M4C071   A0A182PTN3   A0A182LXS2   A0A182QQK0   A0A182S933   A0A182V8U0   A0A182NJD8   W5JA68   A0A182JRR7   A0A182WLB9   A0A182U5C1   A0A182XMC4   A0A182J880   Q7Q6G5   A0A182FH21   A0A182R4I3   A0A182I259   A0A023EL87   Q0IFH1   A0A0K8TQ47   A0A1A9UVH5   A0A1A9ZZ92   D3TKL0   A0A1W4XEJ4   T1DN00   A0A0A9XUG8   A0A1B6LZD5   A0A2R7VTL5   D6WII8   A0A1Q3FME3   B0WLT7   V5GZ23   A0A1A9YT36   A0A1B6DY19   A0A0V0G8J4   A0A069DX16   A0A1B6FIX6   B4JYU0   B4K4G9   A0A1D2NDN4   A0A0C9PS16   A0A034WI29   B4MCA0   W8C2S3   E0V9V6   A0A0K8UT62   A0A1J1J868   U5EU78   A0A0P4VVC7   R4FNR2   A0A336MF86   A0A1Y1L5P9   B3M1Y3   A0A195C3C9   A0A151J317   F4WK96   A0A151JWF6   A0A158NMM8   A0A151X0A2   A0A0A1WCY5   B4PUE7   B4IJE9   Q9VBY7   A0A023F9M1   E2BHA0   E2AW16   A0A026VY15   B3P6T1   A0A2A3E9Z2   A0A0M9A1V7   A0A088AVD7   A0A0L7R002   A0A1W4VKD7   B4NIX4   A0A2H8TLZ2   A0A226E756   A0A2S2NJD7   J9JW33   B4GE39   Q297G0   A0A224XXM3   A0A0C9PPT4   K7IVA8   K7INJ7  

Pubmed

19121390    22118469    26354079    22651552    26227816    24845553    + More
24438588    25315136    25244985    20920257    23761445    12364791    14747013    17210077    24945155    17510324    26369729    20353571    25401762    26823975    18362917    19820115    26334808    17994087    27289101    25348373    24495485    20566863    27129103    28004739    21719571    21347285    25830018    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    25474469    20798317    24508170    30249741    15632085    20075255   

EMBL

BABH01019079    RSAL01000147    RVE45862.1    ODYU01011572    SOQ57399.1    AGBW02011105    + More
OWR47196.1    KQ461175    KPJ07934.1    AK401909    BAM18531.1    GDQN01007107    JAT83947.1    KQ459472    KPJ00106.1    JTDY01004985    KOB67506.1    KK852598    KDR20536.1    LJIG01022663    KRT79371.1    ATLV01023198    KE525341    KFB48553.1    KA647486    AFP62115.1    GGFK01011984    MBW45305.1    GGFJ01009579    MBW58720.1    AXCM01002346    AXCN02000448    ADMH02002052    GGFL01004222    ETN59745.1    MBW68400.1    AXCP01002184    AAAB01008960    EAA11636.3    APCN01000123    GAPW01004604    JAC08994.1    CH477317    EAT43743.1    GDAI01001583    JAI16020.1    EZ421942    EZ424293    ADD18238.1    ADD20569.1    GAMD01003290    JAA98300.1    GBHO01022764    GBHO01022731    GBRD01008851    GBRD01008850    GDHC01003417    JAG20840.1    JAG20873.1    JAG56970.1    JAQ15212.1    GEBQ01010977    JAT29000.1    KK854081    PTY10863.1    KQ971334    EEZ99659.1    GFDL01006351    JAV28694.1    DS231990    EDS30665.1    GALX01002748    JAB65718.1    GEDC01006769    JAS30529.1    GECL01002100    JAP04024.1    GBGD01003025    JAC85864.1    GECZ01019632    JAS50137.1    CH916378    EDV98555.1    CH933806    EDW13921.1    LJIJ01000076    ODN03370.1    GBYB01004158    JAG73925.1    GAKP01005164    GAKP01005162    GAKP01005161    JAC53790.1    CH940657    EDW63182.1    GAMC01000318    JAC06238.1    DS234996    EEB10162.1    GDHF01022563    JAI29751.1    CVRI01000075    CRL08576.1    GANO01002440    JAB57431.1    GDKW01000601    JAI55994.1    ACPB03023230    GAHY01001189    JAA76321.1    UFQT01000932    SSX28061.1    GEZM01063715    JAV69003.1    CH902617    EDV42243.1    KQ978350    KYM94683.1    KQ980313    KYN16720.1    GL888198    EGI65382.1    KQ981664    KYN38488.1    ADTU01002369    KQ982617    KYQ53786.1    GBXI01017545    JAC96746.1    CM000160    EDW98834.1    CH480848    EDW51140.1    AE014297    BT011021    AAF56389.1    AAR30181.1    GBBI01000622    JAC18090.1    GL448287    EFN84869.1    GL443213    EFN62438.1    KK107591    QOIP01000013    EZA48627.1    RLU15257.1    CH954182    EDV53751.1    KZ288311    PBC28545.1    KQ435762    KOX75507.1    KQ414673    KOC64142.1    CH964272    EDW84876.1    GFXV01003234    MBW15039.1    LNIX01000006    OXA52426.1    GGMR01004619    MBY17238.1    ABLF02023589    CH479182    EDW33874.1    CM000070    EAL28245.2    GFTR01003136    JAW13290.1    GBYB01003213    JAG72980.1    AAZX01001180   

Proteomes

UP000005204    UP000283053    UP000007151    UP000053240    UP000053268    UP000037510    + More
UP000027135    UP000030765    UP000095300    UP000095301    UP000076408    UP000075885    UP000075883    UP000075886    UP000075901    UP000075903    UP000075884    UP000000673    UP000075881    UP000075920    UP000075902    UP000076407    UP000075880    UP000007062    UP000069272    UP000075900    UP000075840    UP000008820    UP000078200    UP000092445    UP000192223    UP000007266    UP000002320    UP000092443    UP000001070    UP000009192    UP000094527    UP000008792    UP000009046    UP000183832    UP000015103    UP000007801    UP000078542    UP000078492    UP000007755    UP000078541    UP000005205    UP000075809    UP000002282    UP000001292    UP000000803    UP000008237    UP000000311    UP000053097    UP000279307    UP000008711    UP000242457    UP000053105    UP000005203    UP000053825    UP000192221    UP000007798    UP000198287    UP000007819    UP000008744    UP000001819    UP000002358   

PRIDE

H9J082    Q9VBY7   

Pfam

PF02828   L27        + More
PF00595   PDZ

Interpro

IPR004172   L27_dom        + More
IPR014775   L27_C       
IPR036034   PDZ_sf       
IPR001478   PDZ       
IPR036892   L27_dom_sf       
IPR017365   LIN7       

SUPFAM

SSF50156   SSF50156        + More
SSF101288   SSF101288       

ProteinModelPortal

H9J082   A0A3S2NF26   A0A2H1WWF0   A0A212F0B4   A0A194QRG8   I4DKU1   + More
A0A1E1WAJ5   A0A194Q9L9   A0A0L7KWR0   A0A067RAA3   A0A0T6AWR3   A0A084WEA9   A0A1I8PFL9   T1PFI0   A0A182YEE2   A0A2M4AX28   A0A2M4C071   A0A182PTN3   A0A182LXS2   A0A182QQK0   A0A182S933   A0A182V8U0   A0A182NJD8   W5JA68   A0A182JRR7   A0A182WLB9   A0A182U5C1   A0A182XMC4   A0A182J880   Q7Q6G5   A0A182FH21   A0A182R4I3   A0A182I259   A0A023EL87   Q0IFH1   A0A0K8TQ47   A0A1A9UVH5   A0A1A9ZZ92   D3TKL0   A0A1W4XEJ4   T1DN00   A0A0A9XUG8   A0A1B6LZD5   A0A2R7VTL5   D6WII8   A0A1Q3FME3   B0WLT7   V5GZ23   A0A1A9YT36   A0A1B6DY19   A0A0V0G8J4   A0A069DX16   A0A1B6FIX6   B4JYU0   B4K4G9   A0A1D2NDN4   A0A0C9PS16   A0A034WI29   B4MCA0   W8C2S3   E0V9V6   A0A0K8UT62   A0A1J1J868   U5EU78   A0A0P4VVC7   R4FNR2   A0A336MF86   A0A1Y1L5P9   B3M1Y3   A0A195C3C9   A0A151J317   F4WK96   A0A151JWF6   A0A158NMM8   A0A151X0A2   A0A0A1WCY5   B4PUE7   B4IJE9   Q9VBY7   A0A023F9M1   E2BHA0   E2AW16   A0A026VY15   B3P6T1   A0A2A3E9Z2   A0A0M9A1V7   A0A088AVD7   A0A0L7R002   A0A1W4VKD7   B4NIX4   A0A2H8TLZ2   A0A226E756   A0A2S2NJD7   J9JW33   B4GE39   Q297G0   A0A224XXM3   A0A0C9PPT4   K7IVA8   K7INJ7  

PDB

2DKR     E-value=1.78082e-34,     Score=361

KEGG

101743054    K19931 protein lin-7 | (RefSeq) protein lin-7 homolog C

GO

GO:0015031   GO:0097025   GO:0098793   GO:0006887   GO:0016323   GO:0007269   GO:0097016   GO:0005911   GO:1903361   GO:0045199   GO:0045202   GO:0007298   GO:0035003   GO:0008582   GO:0045211   GO:0007163   GO:0005515   GO:0003755   GO:0006457   GO:0004842   GO:0016567   GO:0006355   GO:0016818   GO:0003676   GO:0008026   GO:0016597  

Subcellular location

Cell membrane  

Length:

198

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.000490000000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.22254

outside

1  -  198

 

 

Pi

119.267875

Theta

92.52601

Tajima's D

0.528386

CLR

34.095772

CSRT

0.51812409379531

Interpretation

Uncertain