SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO05917
Pre Gene Modal
BGIBMGA000463
Annotation
tetraspanin_D107_[Bombyx_mori]
Full name
Tetraspanin      
Location in the cell
PlasmaMembrane   Reliability : 4.56
 

Sequence

CDS
ATGGCCCTCGAAGGTGGAATGTCCTGTGTAAAGTACCTCATGTTTTGCTTCAATCTCCTGTTTGCCATTACGGGATTGATCATCCTGATAGTTGGCATCAGGGCTGAAATAAACTCGTATCCTTACATGAACTTCACCGATGAGAACTTCTACAAGTTCGCTCCGATCGTTCTCATCATTGTCGGCATTATTGTTTTCATTGTCGCGTTCTTCGGCTGCTGTGGCGCTGTCAAAGAGAATCACTGCATGATAATAACGCTATGGTCTGCAGAAGGTTACACTTGGGGATACCAAATTTACAATGGTCAAAGTGTGCAAGTATTTGGTTTGGATACCGGAAGTATAGTAGTAACATTGGCAGAAGGTTTACTTGATGAAGGTCGCTGCATGATAACTGACAACTACTACACGAGCGACCCTTTGACAGAATTTATGTTTTCTCGCAATACAGACAGACCTCTGTGGCACAGTCAATAA
Protein
MALEGGMSCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMNFTDENFYKFAPIVLIIVGIIVFIVAFFGCCGAVKENHCMIITLWSAEGYTWGYQIYNGQSVQVFGLDTGSIVVTLAEGLLDEGRCMITDNYYTSDPLTEFMFSRNTDRPLWHSQ

Summary

Similarity
Belongs to the tetraspanin (TM4SF) family.
Pfam
PF00335   Tetraspanin
Interpro
IPR008952   Tetraspanin_EC2_sf        + More
IPR018503   Tetraspanin_CS       
IPR018499   Tetraspanin/Peripherin       
IPR000301   Tetraspanin       
SUPFAM
SSF48652   SSF48652       
Gene 3D

Ontologies

Topology

Subcellular location
Membrane  
Length:
158
Number of predicted TMHs:
2
Exp number of AAs in TMHs:
45.74353
Exp number, first 60 AAs:
29.79348
Total prob of N-in:
0.99526
POSSIBLE N-term signal
sequence
inside
1  -  12
TMhelix
13  -  35
outside
36  -  54
TMhelix
55  -  77
inside
78  -  158
 
 

Population Genetic Test Statistics

Pi
259.8281
Theta
196.089859
Tajima's D
1.22805
CLR
0.030977
CSRT
0.71906404679766
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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