Gene

KWMTBOMO05916

Annotation

PREDICTED:_leukocyte_surface_antigen_CD53-like_[Bombyx_mori]

Location

Bomo_Chr10(-):14358002-14367875      View in EpiBrowser

Full name

Tetraspanin      

Location in the cell

PlasmaMembrane   Reliability : 4.711

CDS

ATGTCTTTAAAATTAAATCTTGAAGTTCCAAAGTTTTTGAAATCCGTTAGGTATACTTTGGCCGCAGTAAATGGATTGTTTTTGTTAACTGGTTTCCTGCTGCTAATCGTTGGGGTTGTGATCCTCGTCCAATATTCTGAGTATGAAGTATTCGTCACTCAAAGATTCTTCACAATACCAGGATTCGTGATTGCGACAGGCGTGATTATATGCATTGGATCCATCCTAGGGTTTTATGGAGCGATTTCAGAGCAGTTTTACTTTATTGCTGGGTACGTGATGCTGTCCATAGTGGTACTGGTCTTCGAAATAGTTATTATAATAATTGCGTTCGCTTTGAGTAACGACGCGGTGTCCGAGATCAGAGCCCCGATGTTGCAAAGTCACCAGCTGTACGAGAGTAGACGAGATATAGCCAGGCTTTGGGACGACTTGCAAATGGAATTCGAGTGCTGCGGAGTGTCTAGCCGTTTGGACTACATGTCAAGTAGGATCCCCGTGAGCTGCTGCCACATAGACTACGGCACTATATCGCCATTCGAGTGTGGTGCGGCCAACGCTTACACGACGGGCTGCGCGACCTTTCTCGGCGAATGGCTTGCATACAACGCGTATGTGATAGCGGTTTGTGCCATCGTTGCCACGAGTCTACAGGTATTATTATCAGCGATGTCAGGGTGGCTGGCCTACAGATCGAAGTTCGAAGAGGTTGAATTAGAGTCTTGA

Protein

MSLKLNLEVPKFLKSVRYTLAAVNGLFLLTGFLLLIVGVVILVQYSEYEVFVTQRFFTIPGFVIATGVIICIGSILGFYGAISEQFYFIAGYVMLSIVVLVFEIVIIIIAFALSNDAVSEIRAPMLQSHQLYESRRDIARLWDDLQMEFECCGVSSRLDYMSSRIPVSCCHIDYGTISPFECGAANAYTTGCATFLGEWLAYNAYVIAVCAIVATSLQVLLSAMSGWLAYRSKFEEVELES

Similarity

Belongs to the tetraspanin (TM4SF) family.

Uniprot

A0A194QSH1   A0A2A4IXZ8   A0A1E1W325   A0A212F0D6   A0A2H1WXS7   A0A212F0H8   + More
A0A2A4IYM5   A0A2H1WHQ5   A0A194QRG1   H9J084   A0A1E1WEA3   A0A3S2LVP5   B4N098   A0A1I8PKV3   B4M9P5   A0A1L8EFT9   D3TNV1   B3N7U6   A0A1W4VM88   A0A1L8E9P8   B4NXJ3   A0A3B0JH53   A0A0L0CFI0   B4KEY4   B4HYS4   A0A0M4EPZ9   A0A0J9QZ16   Q29JV0   B4GJ37   A0A1I8NCC7   A0A0M5J6B1   B4Q7A8   B3MM83   A0A1A9Y1P1   A0A1A9VA64   A0A1B0B298   A0A1B0AAK9   Q9VLH1   K7IWU0   W8C0N6   H7CHJ1   E0VTU3   A0A026WS85   A0A2P8YSB4   A0A034WG34   J3JU16   B4JP50   A0A336N925   A0A158NJP6   A0A195ELK9   A0A067QFM7   D6X0S1   N6UIT6   A0A0A1WGM2   A0A1J1ILC1   U5EZJ8   A0A336LVF9   A0A2R7W389   A0A1Y1MU82   A0A0K8WI46   A0A3L8DCY1   A0A151XK38   E9J783   A0A195FQC8   A0A0C9QE23   F4WCE1   A0A195C5J9   A0A232FCE8   E2A972   A0A1S4EED3   A0A182RGQ4   A0A182PKV3   A0A0C9RNX4   A0A1Q3FNJ5   B4J8Z2   A0A182VTW7   A0A232EQ19   A0A2M4BXS0   A0A1Y1L9E2   A0A2M3YZD8   A0A1B6H4L4   A0A0T6BG20   R4UW62   D6X0S0   A0A023EL63   A0A0P4VQ00   A0A182J8J5  

Pubmed

26354079    22118469    19121390    17994087    18057021    20353571    + More
17550304    26108605    22936249    15632085    23185243    25315136    11122467    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    20075255    24495485    20566863    24508170    29403074    25348373    22516182    21347285    24845553    18362917    19820115    23537049    25830018    28004739    30249741    21282665    21719571    28648823    20798317    24945155    27129103   

EMBL

KQ461175    KPJ07930.1    NWSH01004989    PCG64519.1    GDQN01009677    JAT81377.1    + More
AGBW02011105    OWR47200.1    ODYU01011833    SOQ57802.1    OWR47201.1    PCG64518.1    ODYU01008695    SOQ52486.1    KPJ07929.1    BABH01019084    BABH01019085    GDQN01005730    GDQN01001844    JAT85324.1    JAT89210.1    RSAL01000003    RVE54769.1    CH963920    EDW77511.1    KRF98688.1    CH940654    EDW57921.1    KRF78024.1    GFDG01001330    JAV17469.1    EZ423103    ADD19379.1    CH954177    EDV58307.1    GFDG01003342    JAV15457.1    CM000157    EDW88584.1    OUUW01000006    SPP81515.1    JRES01000477    KNC30957.1    CH933807    EDW11953.1    KRG02996.1    CH480818    EDW52204.1    CP012523    ALC39012.1    CM002910    KMY89176.1    CH379062    EAL32861.1    KRT05022.1    CH479184    EDW37351.1    ALC39536.1    CM000361    EDX04302.1    CH902620    EDV31843.1    KPU73654.1    JXJN01007522    JXJN01007523    AE014134    AF274011    AY071356    AAF52719.2    AAF90137.1    AAL48978.1    ACZ94205.1    AAZX01000576    GAMC01003917    GAMC01003916    JAC02639.1    AB701637    BAL70289.1    DS235773    EEB16799.1    KK107119    EZA58823.1    PYGN01000391    PSN47125.1    GAKP01005680    GAKP01005679    JAC53272.1    BT126727    AEE61689.1    CH916372    EDV99475.1    UFQS01003761    UFQT01003761    SSX15916.1    SSX35258.1    ADTU01001950    KQ978739    KYN28817.1    KK853603    KDR06366.1    KQ971372    EFA09563.1    APGK01018456    KB740076    ENN81645.1    GBXI01016642    JAC97649.1    CVRI01000055    CRL01039.1    GANO01000667    JAB59204.1    UFQT01000215    SSX21810.1    KK854282    PTY14162.1    GEZM01025139    GEZM01025138    JAV87566.1    GDHF01024480    GDHF01011543    GDHF01001754    JAI27834.1    JAI40771.1    JAI50560.1    QOIP01000009    RLU18214.1    KQ982052    KYQ60665.1    GL768424    EFZ11325.1    KQ981305    KYN42795.1    GBYB01012658    JAG82425.1    GL888070    EGI68121.1    KQ978292    KYM95448.1    NNAY01000426    OXU28496.1    GL437711    EFN70057.1    GBYB01012814    GBYB01015237    JAG82581.1    JAG85004.1    GFDL01005875    JAV29170.1    CH916367    EDW01341.1    NNAY01002867    OXU20422.1    GGFJ01008709    MBW57850.1    GEZM01061859    JAV70282.1    GGFM01000872    MBW21623.1    GECZ01000130    JAS69639.1    LJIG01000817    KRT86123.1    KC571982    AGM32481.1    EFA09564.2    GAPW01003665    GAPW01003664    GAPW01003663    GAPW01003662    JAC09935.1    GDKW01002116    JAI54479.1   

Proteomes

UP000053240    UP000218220    UP000007151    UP000005204    UP000283053    UP000007798    + More
UP000095300    UP000008792    UP000008711    UP000192221    UP000002282    UP000268350    UP000037069    UP000009192    UP000001292    UP000092553    UP000001819    UP000008744    UP000095301    UP000000304    UP000007801    UP000092443    UP000078200    UP000092460    UP000092445    UP000000803    UP000002358    UP000009046    UP000053097    UP000245037    UP000001070    UP000005205    UP000078492    UP000027135    UP000007266    UP000019118    UP000183832    UP000279307    UP000075809    UP000078541    UP000007755    UP000078542    UP000215335    UP000000311    UP000079169    UP000075900    UP000075885    UP000075920    UP000075880   

PRIDE

Q9VLH1   

Pfam

PF00335   Tetraspanin

Interpro

IPR018499   Tetraspanin/Peripherin        + More
IPR008952   Tetraspanin_EC2_sf       
IPR000301   Tetraspanin       
IPR018503   Tetraspanin_CS       

SUPFAM

SSF48652   SSF48652       

Gene 3D

1.10.1450.10    

ProteinModelPortal

A0A194QSH1   A0A2A4IXZ8   A0A1E1W325   A0A212F0D6   A0A2H1WXS7   A0A212F0H8   + More
A0A2A4IYM5   A0A2H1WHQ5   A0A194QRG1   H9J084   A0A1E1WEA3   A0A3S2LVP5   B4N098   A0A1I8PKV3   B4M9P5   A0A1L8EFT9   D3TNV1   B3N7U6   A0A1W4VM88   A0A1L8E9P8   B4NXJ3   A0A3B0JH53   A0A0L0CFI0   B4KEY4   B4HYS4   A0A0M4EPZ9   A0A0J9QZ16   Q29JV0   B4GJ37   A0A1I8NCC7   A0A0M5J6B1   B4Q7A8   B3MM83   A0A1A9Y1P1   A0A1A9VA64   A0A1B0B298   A0A1B0AAK9   Q9VLH1   K7IWU0   W8C0N6   H7CHJ1   E0VTU3   A0A026WS85   A0A2P8YSB4   A0A034WG34   J3JU16   B4JP50   A0A336N925   A0A158NJP6   A0A195ELK9   A0A067QFM7   D6X0S1   N6UIT6   A0A0A1WGM2   A0A1J1ILC1   U5EZJ8   A0A336LVF9   A0A2R7W389   A0A1Y1MU82   A0A0K8WI46   A0A3L8DCY1   A0A151XK38   E9J783   A0A195FQC8   A0A0C9QE23   F4WCE1   A0A195C5J9   A0A232FCE8   E2A972   A0A1S4EED3   A0A182RGQ4   A0A182PKV3   A0A0C9RNX4   A0A1Q3FNJ5   B4J8Z2   A0A182VTW7   A0A232EQ19   A0A2M4BXS0   A0A1Y1L9E2   A0A2M3YZD8   A0A1B6H4L4   A0A0T6BG20   R4UW62   D6X0S0   A0A023EL63   A0A0P4VQ00   A0A182J8J5  

KEGG

101738907    K06497 CD63 antigen | (RefSeq) leukocyte surface antigen CD53-like

PATHWAY

04142    Lysosome - Bombyx mori (domestic silkworm)

GO

GO:0016021   GO:0005887   GO:0005515   GO:0005488   GO:0016765   GO:0005634   GO:0006355   GO:0016818   GO:0003676   GO:0008026   GO:0016597  

Subcellular location

Membrane  

Length:

241

Number of predicted TMHs:

4

Exp number of AAs in TMHs:

92.13278

Exp number, first 60 AAs:

26.49098

Total prob of N-in:

0.87380

POSSIBLE N-term signal

sequence

inside

1  -  19

TMhelix

20  -  42

outside

43  -  56

TMhelix

57  -  79

inside

80  -  85

TMhelix

86  -  108

outside

109  -  198

TMhelix

199  -  221

inside

222  -  241

 

 

Pi

24.699803

Theta

20.997757

Tajima's D

0.594357

CLR

1.800845

CSRT

0.55767211639418

Interpretation

Uncertain