Gene

KWMTBOMO05911

Pre Gene Modal

BGIBMGA002785

Annotation

PREDICTED:_echinoderm_microtubule-associated_protein-like_CG42247_[Amyelois_transitella]

Location

Bomo_Chr10(+):14263296-14290734      View in EpiBrowser

Full name

Echinoderm microtubule-associated protein-like CG42247      

Location in the cell

Mitochondrial   Reliability : 1.018 Nuclear   Reliability : 1.479

CDS

ATGTCGCGTCGCGTACACCGCCCGCGGATACAAGCCCGTCTCCGCCCGCAGGCCGCCCCGGAGCCCGCACCGCCACCGGAACCGCCCCAACCTGAGCCCGACCATCCGCCTTCCGAAGAGGAACGAGAACCAGGCGACTGGCGAGCCTCTCGGCCATCCTCCCCTCCACAGCGCCCTGATGACATCTCAGAAGGCTCGGAACCTCCACGACCGATCAGAACAGAACCCGCCAGTCGCTATGCCAACCTCAACTACTGGAAAGCGAGAAGGGTCACGTTCTACCGTAACGGAGATCCGTTCCATCCTGGCGTCGAATTCCGATTCAAGCCGGGTCGTGATTTGGCGTCTATTGATGCGTTACTGGACCGATTGTCTGAGAGACTAGAATTACCTAGAGGAGCGAGGTTTATCTTCGGGATGGACGGAGACCGGAAGTACAGGCTGGAAGAGCTGGAAGACGGAGCATCTTACGTCGTGTCTTCCTACAAAACTTTCAAGGCCGCCAGCTACGGTAAAAAGAACGGTATGTGGTACGGTGGAACTGGTACCAGCGGGTGGTCGAGGTCCGGTACTCGCAAGCAATCGGTTGCGGAGTCCGATGCACCTCCTCCCGGAGGTGGAAAGCCGGCTAGTGGTCGTGTCATCAGAATCATCAACAACATGGACCACTCTATACAGTGTCGCGTTTTACTGAACTTACGGACAACGCAACCTTTCGAAGAGGTATTAGAGGATCTGGGTCAAGTACTCAAAATGAGCGGGGCAAAGCGAATGTACACGATAACCGGTCAAGAGGTAAGAAGTTTCTCTCAACTCCGGAACGAATTTGCAGACGTGGAAACATTTTACTTGGGACCTGCGATGCTTCCACCAGCTTTGAGTCCCGGAGTCAGCGCTCCACTGCCTATCGAGTCACCAATTAGAAGGTCTCGATCGAGAGCCAATGTGGCGACAGCACCGATGATTGATGACACGCGAAACGGTGGGCGACGAGCCAGGAGCAAGAGCAGACCGCGGGTTTTATACGCGCCCGAAGGCGAGATTGTTAGAAATTCAGATTACACTCTCCTTGAAGTTCTGAAGGAAGAACCTATACGCGTGACTATTCGTGGCTTACGAAGAACATTCTACCCGCCCATACATCATGCGCCTGTCGACAACTCTCCGCCCGACAAGAAATTACAACTAGATTGGGTATATGGGTATCGAGGTTTTGATTCCCGTCGAAACTTATGGGTGTTGCCGACTGGAGAACTGCTGTACTACGTGGCGGCTGTGGCCGTCATGTACGACAGAGATGAGGAGTCTCAAAGACATTATACCGGCCACACTGAGGATATACAGTGCATGGAGCTCCATCCGTCCCGGGAGCTTGTGGCGAGCGGACAACGGGCCGGCCGGGGACGGCGCGCTCAGGCGCACGTCCGCATCTGGAGCACCGACACATTGCAGACCCTGCACGTGTTCGGCATGGCCGAATTCGAAGCCGGTGTCTCGGCTGTGGCATTCTCGCAATTAAATGGCGGTAGTTACGTCCTTGCTGTGGATGCTGGTCGCGAGAGCATACTCTCCGTGTGGCAGTGGCAGTGGGGCCATCTACTCGGAAAAGTCGCTACTTTGCAAGAAGAGCTAACCGGCGCTGCTTTTCATCCTTTAGACGACAACTTACTCATAACACACGGAAAAGGCCATCTCGCGTTCTGGAATAGAAGGAAAGATGGATTCTTCGAAAGAACCGATATCGTCAAACCGCCTTCTCGCACGCATGTGACCGCCCTGCAGTTCGAGCAGGACGGCGACGTGGTGACGGCAGATAGCGATGGGTTCATTACGATTTACAGCGTCGATAGCGACGGTGCTTACTTCGTGCGAATGGAGTTTGAGGCTCACATCAAAGGCATAAGTTCCCTCATCATGCTGTCTGAGGGGACATTAATATCTGGAGGCGAGAAGGACAGAAAAATTGCCGCCTGGGACTCTTTGCAGAATTACAAAAGAATTACTGAGACGAAGTTACCAGAAACTGCTGGTGGGATCCGCAGTATCTACCCACAGCGGCCCGGTCGTAACGATGGTAATCTGTACGTCGGTACGACCAGAAACAATATAATGGAGGGATCTTTACAGAGGCGATTTAATCAAATTGTCTTCGGACACCACAAGCCGCTGCTGGGTGTCGCGGTACACCCTGACGACGAGATGTTCGCGACAGCCGGTCACGACAAGAACATTGCTCTGTGGAAAGGGCACAAGCTTGTTTTCGCAACTCAGGTGGGATACGAGTGCGTGTCGCTGGCGTGGCACCCCGGGGGCGGCGCGCTCGCGGCCGGCAGCACTGAGGGTCACCTGGTTGTGCTCAACGCCGACGCCGGAGCGCATGTCGCAACACTCAGAGTCTGCGGTTCGCCGCTCAATTGCCTGCAATATAACACCGCTGGAGATTTCCTCGCCATTGGATCTCAGAACGGCAGTATCTACCTATTCAGGGTGTCTCGAGACGGCTTCTCTTACAAGAAGTCGAATAAGATCCGAGGCGCTCAACCTCTGATGCAGTTGGACTGGAGTCTCGACGGAAACTTCTTGCAGACTGTGACCGCGGATTACGATTTGGCTTTCTGGGATATAAAATCGCTATCTCCAGAGAAAAGCCCGATAGGCATGAAAGATGTCAAGTGGTCCACGTTTAACTCAACTGTCGGATTCCTTGTCTCGGGTATGTGGAACAATCGCTTCTACCCAATGACATCCTTGATTTCGTCATCGAGTCGCTCGGCGGCCCACGATCTTCTGATCAGCGGTGACTACGATGGATACCTACGACTGTTCAGGTATCCATGCGCCAGCCCTAAGGCTGAATACAACGAGGTGAAAGTATATAGTGGCGCCATCCACAACGCGAGGTTCTTATTCAACGACCGCTGCGTGATCAGCGCCGGAGGTCACGACGCCGCTCTCATGCTGTGGGAGCTGGTGGAGGAATAG

Protein

MSRRVHRPRIQARLRPQAAPEPAPPPEPPQPEPDHPPSEEEREPGDWRASRPSSPPQRPDDISEGSEPPRPIRTEPASRYANLNYWKARRVTFYRNGDPFHPGVEFRFKPGRDLASIDALLDRLSERLELPRGARFIFGMDGDRKYRLEELEDGASYVVSSYKTFKAASYGKKNGMWYGGTGTSGWSRSGTRKQSVAESDAPPPGGGKPASGRVIRIINNMDHSIQCRVLLNLRTTQPFEEVLEDLGQVLKMSGAKRMYTITGQEVRSFSQLRNEFADVETFYLGPAMLPPALSPGVSAPLPIESPIRRSRSRANVATAPMIDDTRNGGRRARSKSRPRVLYAPEGEIVRNSDYTLLEVLKEEPIRVTIRGLRRTFYPPIHHAPVDNSPPDKKLQLDWVYGYRGFDSRRNLWVLPTGELLYYVAAVAVMYDRDEESQRHYTGHTEDIQCMELHPSRELVASGQRAGRGRRAQAHVRIWSTDTLQTLHVFGMAEFEAGVSAVAFSQLNGGSYVLAVDAGRESILSVWQWQWGHLLGKVATLQEELTGAAFHPLDDNLLITHGKGHLAFWNRRKDGFFERTDIVKPPSRTHVTALQFEQDGDVVTADSDGFITIYSVDSDGAYFVRMEFEAHIKGISSLIMLSEGTLISGGEKDRKIAAWDSLQNYKRITETKLPETAGGIRSIYPQRPGRNDGNLYVGTTRNNIMEGSLQRRFNQIVFGHHKPLLGVAVHPDDEMFATAGHDKNIALWKGHKLVFATQVGYECVSLAWHPGGGALAAGSTEGHLVVLNADAGAHVATLRVCGSPLNCLQYNTAGDFLAIGSQNGSIYLFRVSRDGFSYKKSNKIRGAQPLMQLDWSLDGNFLQTVTADYDLAFWDIKSLSPEKSPIGMKDVKWSTFNSTVGFLVSGMWNNRFYPMTSLISSSSRSAAHDLLISGDYDGYLRLFRYPCASPKAEYNEVKVYSGAIHNARFLFNDRCVISAGGHDAALMLWELVEE

Description

May modify the assembly dynamics of microtubules, such that microtubules are slightly longer, but more dynamic.

Similarity

Belongs to the WD repeat EMAP family.

Keywords

Alternative splicing   Complete proteome   Cytoplasm   Cytoskeleton   Microtubule   Reference proteome   Repeat   WD repeat  

Feature

chain  Echinoderm microtubule-associated protein-like CG42247
splice variant  In isoform D.

Uniprot

A0A2H1WHD9   A0A212F0I0   A0A194QSG6   A0A1W4WFE9   A0A194Q3I1   T1HQX8   + More
A0A195AZ74   K7IT63   E2BZ47   A0A026W4T0   A0A0M3QWA6   Q2M179   A0A1W4UL58   A0A0J9UL53   Q9VUI3   B4PII0   B3NHJ7   M9PF94   B3MAV1   A0A3B0JY66   A0A1J1HYG1   A0A182IPW8   A0A158NZ51   Q7QFI4   D6X2P5   A0A2H8TVI9   A0A2S2NPA7   J9JQL4   A0A0C9Q1W1   A0A0M9A361   A0A195D0N2   A0A088A158   A0A195F7C6   A0A151WWX9   A0A151IS42   Q16H05   Q16LA1   A0A1S4FX01   B4LFM2   B4IY12   B4QKG9   A0A1W4UL98   B4KXN1   M9PFN2   A0A3B0JQV1   B4NM07   A0A1I8Q5R6   A0A0L0C8B5   B0WSV5   A0A182MZJ0   A0A182PFV2   A0A182W4I9   A0A182XE01   A0A182M0F5   A0A182UX81   A0A182UAS9   A0A182Y7S4   A0A1A9WCU1   A0A1A9Z8T2   A0A2A3ELV4   Q9VUI3-2   B4HHU6   A0A1B0CH65   A0A3F2YSR1   A0A3F2YYW5   A0A182FMA9   A0A1B0FI13   A0A336L3M0   A0A182R9H2   A0A336L5V7   A0A2S2R6X4   A0A1I8MCA3   U4UA20   A0A1B0D286   A0A336L6C9   E2AAR9   B4GUI1   A0A182G3U9   E0VAV1   N6TEJ2   A0A1A9Y9W5   A0A1B0BJX9   E9JD10   A0A3Q0J3X8  

Pubmed

22118469    26354079    20075255    20798317    24508170    15632085    + More
17994087    22936249    10731132    12537572    12537569    10603347    17550304    12537568    12537573    12537574    16110336    17569856    17569867    21347285    12364791    18362917    19820115    17510324    26108605    25244985    25315136    23537049    26483478    20566863    21282665   

EMBL

ODYU01008695    SOQ52490.1    AGBW02011105    OWR47204.1    KQ461175    KPJ07925.1    + More
KQ459472    KPJ00098.1    ACPB03023001    ACPB03023002    ACPB03023003    ACPB03023004    KQ976701    KYM77259.1    AAZX01003328    GL451555    EFN79049.1    KK107419    EZA51062.1    CP012525    ALC43813.1    CH379069    EAL30696.2    CM002912    KMY99635.1    AE014296    BT001524    BT030411    AF208486    CM000159    EDW94537.2    CH954178    EDV51792.2    AGB94543.1    CH902618    EDV39185.2    OUUW01000002    SPP76038.1    CVRI01000020    CRK91169.1    ADTU01003814    ADTU01003815    ADTU01003816    ADTU01003817    AAAB01008846    EAA06456.3    KQ971372    EFA10279.1    GFXV01006480    MBW18285.1    GGMR01006348    MBY18967.1    ABLF02032629    ABLF02032634    ABLF02032636    ABLF02032643    GBYB01007968    JAG77735.1    KQ435776    KOX74879.1    KQ977004    KYN06475.1    KQ981768    KYN35974.1    KQ982684    KYQ52348.1    KQ981093    KYN09533.1    CH478218    EAT33525.1    CH477913    EAT35090.1    CH940647    EDW70340.2    CH916366    EDV97555.1    CM000363    EDX10480.1    CH933809    EDW19738.1    AGB94544.1    SPP76039.1    CH964278    EDW85375.2    JRES01000760    KNC28511.1    DS232077    EDS34083.1    AXCM01000723    AXCM01000724    AXCM01000725    KZ288215    PBC32687.1    CH480815    EDW41511.1    AJWK01012074    APCN01005676    CCAG010002770    CCAG010002771    UFQS01001714    UFQT01001714    SSX11941.1    SSX31488.1    SSX11940.1    SSX31487.1    GGMS01016583    MBY85786.1    KB631865    ERL86795.1    AJVK01022611    AJVK01022612    AJVK01022613    SSX11942.1    SSX31489.1    GL438158    EFN69469.1    CH479191    EDW26264.1    JXUM01142273    JXUM01142274    JXUM01142275    KQ569392    KXJ68640.1    DS235016    EEB10507.1    APGK01040998    APGK01040999    APGK01041000    APGK01041001    KB740986    ENN76153.1    JXJN01015692    GL771866    EFZ09341.1   

Proteomes

UP000007151    UP000053240    UP000192223    UP000053268    UP000015103    UP000078540    + More
UP000002358    UP000008237    UP000053097    UP000092553    UP000001819    UP000192221    UP000000803    UP000002282    UP000008711    UP000007801    UP000268350    UP000183832    UP000075880    UP000005205    UP000007062    UP000007266    UP000007819    UP000053105    UP000078542    UP000005203    UP000078541    UP000075809    UP000078492    UP000008820    UP000008792    UP000001070    UP000000304    UP000009192    UP000007798    UP000095300    UP000037069    UP000002320    UP000075884    UP000075885    UP000075920    UP000076407    UP000075883    UP000075903    UP000075902    UP000076408    UP000091820    UP000092445    UP000242457    UP000001292    UP000092461    UP000075840    UP000069272    UP000092444    UP000075900    UP000095301    UP000030742    UP000092462    UP000000311    UP000008744    UP000069940    UP000249989    UP000009046    UP000019118    UP000092443    UP000092460    UP000079169   

PRIDE

Q9VUI3   

Pfam

PF03451   HELP        + More
PF00400   WD40
PF03607   DCX
PF12894   ANAPC4_WD40

Interpro

IPR019775   WD40_repeat_CS        + More
IPR036572   Doublecortin_dom_sf       
IPR017986   WD40_repeat_dom       
IPR005108   HELP       
IPR001680   WD40_repeat       
IPR003533   Doublecortin_dom       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR011047   Quinoprotein_ADH-like_supfam       
IPR036322   WD40_repeat_dom_sf       
IPR024977   Apc4_WD40_dom       
IPR011044   Quino_amine_DH_bsu       
IPR011041   Quinoprot_gluc/sorb_DH       

SUPFAM

SSF89837   SSF89837        + More
SSF50998   SSF50998       
SSF50978   SSF50978       
SSF50969   SSF50969       
SSF50952   SSF50952       

Gene 3D

2.130.10.10     3.10.20.230    

CDD

cd01617  DCX

ProteinModelPortal

A0A2H1WHD9   A0A212F0I0   A0A194QSG6   A0A1W4WFE9   A0A194Q3I1   T1HQX8   + More
A0A195AZ74   K7IT63   E2BZ47   A0A026W4T0   A0A0M3QWA6   Q2M179   A0A1W4UL58   A0A0J9UL53   Q9VUI3   B4PII0   B3NHJ7   M9PF94   B3MAV1   A0A3B0JY66   A0A1J1HYG1   A0A182IPW8   A0A158NZ51   Q7QFI4   D6X2P5   A0A2H8TVI9   A0A2S2NPA7   J9JQL4   A0A0C9Q1W1   A0A0M9A361   A0A195D0N2   A0A088A158   A0A195F7C6   A0A151WWX9   A0A151IS42   Q16H05   Q16LA1   A0A1S4FX01   B4LFM2   B4IY12   B4QKG9   A0A1W4UL98   B4KXN1   M9PFN2   A0A3B0JQV1   B4NM07   A0A1I8Q5R6   A0A0L0C8B5   B0WSV5   A0A182MZJ0   A0A182PFV2   A0A182W4I9   A0A182XE01   A0A182M0F5   A0A182UX81   A0A182UAS9   A0A182Y7S4   A0A1A9WCU1   A0A1A9Z8T2   A0A2A3ELV4   Q9VUI3-2   B4HHU6   A0A1B0CH65   A0A3F2YSR1   A0A3F2YYW5   A0A182FMA9   A0A1B0FI13   A0A336L3M0   A0A182R9H2   A0A336L5V7   A0A2S2R6X4   A0A1I8MCA3   U4UA20   A0A1B0D286   A0A336L6C9   E2AAR9   B4GUI1   A0A182G3U9   E0VAV1   N6TEJ2   A0A1A9Y9W5   A0A1B0BJX9   E9JD10   A0A3Q0J3X8  

PDB

4CI8     E-value=1.46551e-111,     Score=1034

KEGG

101740990    K18595 echinoderm microtubule-associated protein-like 1/2 | (RefSeq) echinoderm microtubule-associat

GO

GO:0035556   GO:0071683   GO:0005737   GO:0008344   GO:0008017   GO:0005874   GO:0035011   GO:0007605   GO:0000226   GO:0003824   GO:0005515   GO:0005488   GO:0016765   GO:0005634   GO:0006355   GO:0016818   GO:0003676   GO:0008026   GO:0016597  

Subcellular location

  

Length:

993

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.308180000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01326

outside

1  -  993

 

 

Pi

224.974549

Theta

172.38944

Tajima's D

1.05987

CLR

0.370893

CSRT

0.677566121693915

Interpretation

Uncertain