Gene

KWMTBOMO05899

Annotation

Retrovirus-related_Pol_polyprotein_from_transposon_412-like_Protein_[Tribolium_castaneum]

Location

Bomo_Chr10(+):13775360-13778488      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.991

CDS

ATGTTAGACCAAAAAATTATTCAACCTAGTTCATCTCCATGGAGCAGCCCCATTTGGGTGGTCCCTAAAAAGTCTGACGCTTCTGGAAAACAAAAATGGCGTGTAGTTATAGACTACAGGAAATTAAACGAAATCACTATTGGAGATAGTTACCCTTTGCCAAACATCACCGACATCCTAGACAAGTTAGGTCATTCTATTTATTTTACTACCCTAGATTTAGCATCAGGTTTTCACCAAATTGAACTTAATGAAAAGGATATTCCTAAGACAGCATTCAGTACTCCTTATGGTCACTATGAATTTTTAAGAATGCCCTTTGGACTCAAAAATGCTCCAGCTACTTTCCAACGCGCTATGGATAGCGTTCTGTACGGATTGCAGGGAGAGCGTTGTTTTGTGTACTTAGATGATATAGTCGTTTTTGCTTCTAGTCTTCAGGAACATGAACAAAAACTCACTGAAGTCTTAGAACGACTCCGTAAATATGGTCTCAAAATTCAACCCGACAAGTGTGAATTTATGCGCAAAGAAGTTGCCTATCTAGGTCATATCATCACAAATCAAGGCGTGAAACCAAATCCCGAAAAGGTTTCAGCAGTTAAAAATTTTCCTATTCCTAAATCGTGTAAAGATATAAAATCATTCTTAGGTCTTGCAGGATACTATCGTAGATTTATACCTAACTTTAGCAAAATCACTAAACCTTTAACGAGCTTACTCAAGAAAGATGTTCCATTTATATGGAGTAAAGATCAGCAGTCAGCATTCGATAAATGCAAAGAAATTTTAACAATGACTCCAATTCTTCAATATCCCGATTTCAACAAAGATTTCGTATTAACTACCGATGCATCGTTACATGCTATTGGTGCTATCCTCTCACAAGGAGATATTGGCAAAGATTTGCCAATCGCGTATGCCTCACGTACTTTAAATAAAGCCGAATCTAATTATTCAACTATCGAAAGAGAGTTGCTTGCCATAGTATGGGCAGTTAAGCATTTCAGACCTTATCTCTTCGGAAGAAGATTCAAAATCGTTACTGACCACAAACCTCTGACGTGGTTATTTTCAATCAAAGATCCAGGCAGTCGTCTCGTAAGATGGCGTCTCAAGCTCGAAGAATATGAGTACGAGATAGTTTATAAAGCAGGAAAAATGAATACTAATGCGGACGCTCTGTCTCGTCCAGCTATTATGAACTCTAACGTTATTATAGACTTAAGTCAAGATGATCAAGACGATTATCTACAAATAAATTTTGAACATTACAAATCCTTAGATCGTACCAATATAAATACTTCTTTTACTAAAATGTCTCCAGATCAGTTATTAGATACTAAGCACAAAAATATATTTATTCCTATGTCATGTGAACCTCCTTCACAAAATAATTTATTTCATGAAGCTATCAGTTTATGTTCACAAACTGAATCATTTTTAGAAAATCAAAAATCTCTATACGAAGTACATTTCTTAAATTCAAATCATAATCAAAATTTATTCTTTACATGCACTAGACCCAGATACTTCGATCCATGGGATTCTGAAAGTTATTTTAAATCTCTTCTCTCATGTCTTCAAAAACATGAAATTGATACATTGTACGTTCCAGATCTTAAAAATGATAATACATGTAAACTAGAAATCAACGAACAACTCTATATATCTTCATATATCGCTGAATCATACAATTGTAAAATTATAATTTGTGAAAATAAAATCTCTTATCCTAAGCCTGACGAAATTCCTAATATTCTAAAAACCTATCACGATGAGCCTCTATCAGGACATCGTGGAATCCTAGAAACAACCAGGAAAATTCGTGATGAATATTTCTGGAAAGGAATGACGAACGACATTAAAGAATACATAGAATCATGTGTCGTTTGCCAACGAAATAAAATTCAACGAAAATCCTTTAAAGCACCTATGGTCATAACCTCTCAATCTACTGAACCATTTGAACGTATTTCAATGGATTTAGTCTCATATTCAGAAATTAGTGATAATAATAACAAATATGTCATAACGTTGCAAGACGATCTCACAAGATTTGTTCAAGCATATCCTATTCCTGACAAAGAAGCAGTCACTATTGCTAAACAAATCTTACATTTTTGCCAACACTTCGGTGTTCCAAAGCGTTTTCATTCGGATCAAGGTACCGAATTTACCAACAACATTCTTAAGCAACTAACAAAATTTCTCGGATGTAATCATACATTCAATACAGCATATCATCCTCAAACAAATGGCGCTCTTGAACGATTCCATGCGACTCTTCGAGATCACATACGCATGTATTGCAATCGTCGTCATAAAAATTGGGATCAAATCATCCCTCTCGCTATTTTATGTCATAATACCTCAGTTAACTCTTCCACGGGTTACACTCCTCATGAACTTTTATTTGGTTTTAAGCCTCGTCCGTTCTACTCACTAAAACCAATCTCTGATTACACAGCATGCGACTATTTAAAAGACTTAAACGAACGTTTAAAGGTCTCTAGAGAAACAGCTTTACAAAATCTAGAAAAGATGAAAGAAAAAGCGAAAGAACGCTATGACAACCAAATTAAGAATTCTGTAGAATATAAAATAGGTCATAAAGTTATGCTAAAAGTTCCTAATCCTAACAATCTAGATCCTAAATGGGAAGGCCCATACGAAATAGTTCGTGTTGGCTTCAATGAAAATTTTCTAATTAAAAAGGGTGGAAAAACCCAATTAGTTCACTCAAATCGTCTTAGACCTTATCCTAATAACGATAATTCATCCTAA

Protein

MLDQKIIQPSSSPWSSPIWVVPKKSDASGKQKWRVVIDYRKLNEITIGDSYPLPNITDILDKLGHSIYFTTLDLASGFHQIELNEKDIPKTAFSTPYGHYEFLRMPFGLKNAPATFQRAMDSVLYGLQGERCFVYLDDIVVFASSLQEHEQKLTEVLERLRKYGLKIQPDKCEFMRKEVAYLGHIITNQGVKPNPEKVSAVKNFPIPKSCKDIKSFLGLAGYYRRFIPNFSKITKPLTSLLKKDVPFIWSKDQQSAFDKCKEILTMTPILQYPDFNKDFVLTTDASLHAIGAILSQGDIGKDLPIAYASRTLNKAESNYSTIERELLAIVWAVKHFRPYLFGRRFKIVTDHKPLTWLFSIKDPGSRLVRWRLKLEEYEYEIVYKAGKMNTNADALSRPAIMNSNVIIDLSQDDQDDYLQINFEHYKSLDRTNINTSFTKMSPDQLLDTKHKNIFIPMSCEPPSQNNLFHEAISLCSQTESFLENQKSLYEVHFLNSNHNQNLFFTCTRPRYFDPWDSESYFKSLLSCLQKHEIDTLYVPDLKNDNTCKLEINEQLYISSYIAESYNCKIIICENKISYPKPDEIPNILKTYHDEPLSGHRGILETTRKIRDEYFWKGMTNDIKEYIESCVVCQRNKIQRKSFKAPMVITSQSTEPFERISMDLVSYSEISDNNNKYVITLQDDLTRFVQAYPIPDKEAVTIAKQILHFCQHFGVPKRFHSDQGTEFTNNILKQLTKFLGCNHTFNTAYHPQTNGALERFHATLRDHIRMYCNRRHKNWDQIIPLAILCHNTSVNSSTGYTPHELLFGFKPRPFYSLKPISDYTACDYLKDLNERLKVSRETALQNLEKMKEKAKERYDNQIKNSVEYKIGHKVMLKVPNPNNLDPKWEGPYEIVRVGFNENFLIKKGGKTQLVHSNRLRPYPNNDNSS

Uniprot

D7GXP0   X1X2K6   J9M441   X1WUD2   A0A2S2NFT1   A0A2S2NNZ3   + More
J9LRA5   A0A2H8TVW1   X1WLD0   A0A2H8THY5   J9LJV3   J9LS83   X1X3W2   A0A2S2P749   X1WLJ7   X1WLD3   X1XU45   X1WUN1   Q65353   J9KGC3   A0A2S2QPU6   J9KPM2   A0A146KMA2   A0A0A9YJ44   A0A0K8S7R8   X1WWZ6   V5GQE1   A0A0K8TRT3   A0A0K8TR58   U5ES61   A0A224XI86   A0A0A9Y0U3   A0A1W7R6I0   X1WM57   X1WZA4   A0A2S2QM51   A0A0A1WP70   J9LY73   A0A355BCF3  

Pubmed

18362917    19820115    1692964    26823975    25401762    26369729    + More
25830018    30148503   

EMBL

GG694348    EFA13518.1    ABLF02024213    ABLF02042472    ABLF02041284    GGMR01003444    + More
MBY16063.1    GGMR01006290    MBY18909.1    ABLF02030471    ABLF02066562    GFXV01006571    MBW18376.1    ABLF02041728    GFXV01001507    MBW13312.1    ABLF02008732    ABLF02041376    ABLF02041371    GGMR01012631    MBY25250.1    ABLF02011176    ABLF02041729    ABLF02011604    ABLF02041632    ABLF02065961    ABLF02025379    ABLF02025385    ABLF02041365    ABLF02057103    M32662    AAA92249.1    GGMS01010347    MBY79550.1    GDHC01021754    JAP96874.1    GBHO01012506    JAG31098.1    GBRD01016627    JAG49199.1    ABLF02041626    GALX01004629    JAB63837.1    GDAI01000737    JAI16866.1    GDAI01000739    JAI16864.1    GANO01002504    JAB57367.1    GFTR01008667    JAW07759.1    GBHO01018861    JAG24743.1    GEHC01000904    JAV46741.1    ABLF02001345    ABLF02006651    ABLF02006655    ABLF02054079    ABLF02054906    ABLF02062695    ABLF02021603    ABLF02041369    GGMS01009646    MBY78849.1    GBXI01013483    JAD00809.1    ABLF02012658    ABLF02012661    DNYX01000239    HBK83403.1   

Proteomes

UP000007266    UP000007819   

Pfam

PF00078   RVT_1        + More
PF00665   rve
PF17921   Integrase_H2C2
PF17919   RT_RNaseH_2
PF01661   Macro
PF12259   Baculo_F
PF00077   RVP
PF17917   RT_RNaseH
PF03732   Retrotrans_gag
PF02902   Peptidase_C48
PF00098   zf-CCHC

Interpro

IPR021109   Peptidase_aspartic_dom_sf        + More
IPR036397   RNaseH_sf       
IPR041588   Integrase_H2C2       
IPR000477   RT_dom       
IPR041577   RT_RNaseH_2       
IPR001584   Integrase_cat-core       
IPR012337   RNaseH-like_sf       
IPR002589   Macro_dom       
IPR036875   Znf_CCHC_sf       
IPR001995   Peptidase_A2_cat       
IPR001969   Aspartic_peptidase_AS       
IPR022048   Envelope_fusion-like       
IPR018061   Retropepsins       
IPR041373   RT_RNaseH       
IPR001878   Znf_CCHC       
IPR005162   Retrotrans_gag_dom       
IPR038765   Papain-like_cys_pep_sf       
IPR003653   Peptidase_C48_C       

SUPFAM

SSF53098   SSF53098        + More
SSF50630   SSF50630       
SSF57756   SSF57756       
SSF54001   SSF54001       

Gene 3D

2.40.70.10     3.30.420.10    

ProteinModelPortal

D7GXP0   X1X2K6   J9M441   X1WUD2   A0A2S2NFT1   A0A2S2NNZ3   + More
J9LRA5   A0A2H8TVW1   X1WLD0   A0A2H8THY5   J9LJV3   J9LS83   X1X3W2   A0A2S2P749   X1WLJ7   X1WLD3   X1XU45   X1WUN1   Q65353   J9KGC3   A0A2S2QPU6   J9KPM2   A0A146KMA2   A0A0A9YJ44   A0A0K8S7R8   X1WWZ6   V5GQE1   A0A0K8TRT3   A0A0K8TR58   U5ES61   A0A224XI86   A0A0A9Y0U3   A0A1W7R6I0   X1WM57   X1WZA4   A0A2S2QM51   A0A0A1WP70   J9LY73   A0A355BCF3  

PDB

4OL8     E-value=9.19071e-75,     Score=716

KEGG

101738890    no KO assigned | (RefSeq) uncharacterized LOC101738890

GO

GO:0003676   GO:0005634   GO:0015074   GO:0008270   GO:0004190   GO:0016021   GO:0008234   GO:0016765   GO:0006355   GO:0016818   GO:0008026   GO:0016597  

Length:

928

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00042

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00005

outside

1  -  928

 

 

Pi

161.750448

Theta

184.05922

Tajima's D

1.848564

CLR

1.115133

CSRT

0.858057097145143

Interpretation

Uncertain