SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO05898
Pre Gene Modal
BGIBMGA002926
Annotation
PREDICTED:_rho_GTPase-activating_protein_21_isoform_X1_[Bombyx_mori]
Location
Bomo_Chr10(-):13746504-13760599      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 4.175
 

Sequence

CDS
ATGCATCCTCAGCCACCAGTCCACGCTCAGCCCCTGCCGTCTGCGGTGTCTGCGTCTACGTGTGCCGCGCCTCGGACCATCGTCATACAGCGTCCAGACGCAAGACACGGCTTCGGTTTTACATTAAGACATTTAGTCGTTTATCCGCCGGAGTCGATTCAAGACCTTTACGAAGATGCGCGGCATTTGGCCGTGGGCGCGGTGGGCGCTCCAATGGACACAATCTTCGTAAGATCGGTCCGGCCGGGAGGACCAGCAGCGCTGGCAGGGCTCCGAGCCGGCGACCGGGTGCTAGCCGTCAACGGCGAGCCGGTCGCGTGTGGACGATCACGAGCACCGTACGCGAGGGTCGTGCAACTAGCCCAAAGAGAACCAAGAATACTAAGGCTCACCGTCGTACCAAGGGACCACGATCTGCTGCAAAGGTATTTCAGCGAAGCCGCGTACAATCGTGAAACGAATCAGCGACCTCTAGACATGCCTGCCCCTGTGGCGGAACACGAGCGATTGTTCGACGCCCACCGGAGACCTAGGGCTGCGCTCCCGGCTCCACAGGCGCCTCTTCGACACAGAGACGACCCTGAGTACGCGAGCGTGGCTTCCATCGCACCGTCGCGGTTCGATATGGGACGGCTGAGCGCTCCGCACTACCTTATGCATGATGGAAGACGAGAATCGGATACTTCGCTGCCATCATCGGCCACAGAAAGCAAAGACAGTCTCGGTTCGTTCGACTCGAATTCGACTCTGACGGGCCGAGAAATAGACGACTCGATCATCCTCTCGAGAATACGAAAGAGCTTGGAGCAGAAGGAAGCTTTCTTGAGGCGACCCAGCCAGCCAATCGGATGGGTGACGCCTGACGTTCCTCCGTCTATCAAACAGAAGGAGTTCTACGCGAGGCCGCAGAAGTTGCAGAAGCCTGCGTGGCCTCCCCCCGCAGCCTCGCCCCCCCTCGCCTCGTCTCCGCCTCCGCAGCCCGCACAGGAGCAAAAGAAAGATGAATGCGCGAGCGTGGACAGCGGAACCTTCAGCGGCTATGGAGAAGTTAACGGTGCCGCCGACAAGACCAGACTAAAACAGGACAAAAGTCAGTTTGTGACAACCCTATCGAAAATACATGAGCTGTTGCCGACCAACGGTCAGAATGGCTTGACCAATGGCTCTGCGAACGGCAAAGTTAACATTAAGGAAGAACTCGAAAACAATCAAGATAACAAATATCCCGTGCCAGAGTTGCAGCTTGTGACCGCGCGAACGAGACAGCTCGAAGAAGCCCGCGGCGGCGGCGAGAGGAGAACGGAGGTAGCTAGAAGTGAATTGGCCAGACTCTCCACCACCAGACTGGAACCGAGCGTCGCTCTGAGGCGTAAGGAGTTTGAGAATAAAACAGCCAGGAGGGAGGCTCGGTCTCTCGATGTGCAACCGCAACAAGATATAGAAACGGAAGCGACGATCGGCGGAAGTTTGTCAGGGAACCAACTGATGATCACCGGCAGCAAACATTTGCATTGTCCCCCTCCGGAAGGATTCGTGCCCGAAACAGAAAAGGTTCAAATGCGAACAAGGTCTAATAGCACCGGCAGTGAAGGATTGCCTATTAGAAGACATCATGCCACAGATGGCAGTCACGCGAAGAGACGTATGGGCCTGAACAGAGAACAAATGGAGGCGATGAATCGAGTGTCGCTGCTGGGGCCGCAGAGGCCGACGCAGCTCAGCCTCGCGCCGCCGCCCGCCTCCGCCTCGCCCTCCCCCACGCCCAGCACGCCCGCCGACTCAGGTTTTGCCGATGACTTGGTCACGAGAAGACAGAAGAAGGACGCTCAACTTGGCGAAGAAGAACGTGCGATGCGGAGGGTGTCGTATCTAAAAGCGACGTGGGGCGATCGGTTGCACTTGGACAGTGACGTGGAGCCAGATGGCGACCACCACGCTCTACGGAGTGTTTATCGCAAGTGGCGCCCTCCTCGATTCACGGACGACATAACGCCGTTGCTGCGAATATTCGACCCACACGCTGTTCTTCCTTCGCGCCCCGAGAAGAAGTGTGATGAAGAAACAGCGGAAAATTCAGAGGAAGCCATTGAGGGAGATGTTGAAGGCAACGTGCAGGTCAAGATGGTGGTCAGCAATGGCAAGAGAGCGAGCGATAGATCGTGGAAGCAAGTATGGGCAGTGCTACAGGGCACTAAGCTGTACCTGTATCGTCACCATCCAGCTCAGGCCTATAACTTATAG
Protein
MHPQPPVHAQPLPSAVSASTCAAPRTIVIQRPDARHGFGFTLRHLVVYPPESIQDLYEDARHLAVGAVGAPMDTIFVRSVRPGGPAALAGLRAGDRVLAVNGEPVACGRSRAPYARVVQLAQREPRILRLTVVPRDHDLLQRYFSEAAYNRETNQRPLDMPAPVAEHERLFDAHRRPRAALPAPQAPLRHRDDPEYASVASIAPSRFDMGRLSAPHYLMHDGRRESDTSLPSSATESKDSLGSFDSNSTLTGREIDDSIILSRIRKSLEQKEAFLRRPSQPIGWVTPDVPPSIKQKEFYARPQKLQKPAWPPPAASPPLASSPPPQPAQEQKKDECASVDSGTFSGYGEVNGAADKTRLKQDKSQFVTTLSKIHELLPTNGQNGLTNGSANGKVNIKEELENNQDNKYPVPELQLVTARTRQLEEARGGGERRTEVARSELARLSTTRLEPSVALRRKEFENKTARREARSLDVQPQQDIETEATIGGSLSGNQLMITGSKHLHCPPPEGFVPETEKVQMRTRSNSTGSEGLPIRRHHATDGSHAKRRMGLNREQMEAMNRVSLLGPQRPTQLSLAPPPASASPSPTPSTPADSGFADDLVTRRQKKDAQLGEEERAMRRVSYLKATWGDRLHLDSDVEPDGDHHALRSVYRKWRPPRFTDDITPLLRIFDPHAVLPSRPEKKCDEETAENSEEAIEGDVEGNVQVKMVVSNGKRASDRSWKQVWAVLQGTKLYLYRHHPAQAYNL

Summary

Uniprot
A0A3S2MAI1   A0A194QE02   A0A212FBZ1   A0A0L7LQR0   A0A2H1WM03   H9J091   + More
A0A1E1WC25   A0A1E1WIQ0   A0A1B6GAS9   A0A1B6GNX0   A0A336MXT1   A0A139WBM1   A0A139WBK7   A0A139WBR9  
Pubmed
26354079    22118469    26227816    19121390    18362917    19820115    + More
EMBL
RSAL01000003    RVE54780.1    KQ459302    KPJ01691.1    AGBW02009252    OWR51251.1    + More
JTDY01000307    KOB77770.1    ODYU01009581    SOQ54113.1    BABH01019137    GDQN01006559    JAT84495.1    GDQN01004278    JAT86776.1    GECZ01010396    JAS59373.1    GECZ01005659    JAS64110.1    UFQS01003699    UFQT01003699    SSX15868.1    SSX35212.1    KQ971372    KYB25303.1    KYB25304.1    KYB25305.1   
Proteomes
UP000283053    UP000053268    UP000007151    UP000037510    UP000005204    UP000007266    + More
PRIDE
H9J091   
Pfam
PF17820   PDZ_6        + More
PF00620   RhoGAP
PF15410   PH_9
Interpro
IPR041489   PDZ_6        + More
IPR011993   PH-like_dom_sf       
IPR001478   PDZ       
IPR036034   PDZ_sf       
IPR000198   RhoGAP_dom       
IPR008936   Rho_GTPase_activation_prot       
IPR001849   PH_domain       
IPR041681   PH_9       
IPR001605   PH_dom-spectrin-type       
SUPFAM
SSF50156   SSF50156        + More
SSF48350   SSF48350       
Gene 3D
2.30.29.30     1.10.555.10    
ProteinModelPortal
A0A3S2MAI1   A0A194QE02   A0A212FBZ1   A0A0L7LQR0   A0A2H1WM03   H9J091   + More
A0A1E1WC25   A0A1E1WIQ0   A0A1B6GAS9   A0A1B6GNX0   A0A336MXT1   A0A139WBM1   A0A139WBK7   A0A139WBR9  
PDB
2YUY     E-value=3.91788e-12,     Score=175

Ontologies

KEGG
101741553    K20315 Rho GTPase-activating protein 21/23 | (RefSeq) rho GTPase-activating protein 21
GO
GO:0007165   GO:0005096   GO:0005543   GO:0005515   GO:0005622   GO:0008270   GO:0016765   GO:0005634   GO:0006355   GO:0016818   GO:0003676   GO:0008026   GO:0016597  

Topology

Length:
746
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00958
Exp number, first 60 AAs:
0.00797
Total prob of N-in:
0.00051
outside
1  -  746
 
 

Population Genetic Test Statistics

Pi
288.379055
Theta
188.933316
Tajima's D
1.430268
CLR
0
CSRT
0.767761611919404
Interpretation
Uncertain
Copyright@ 2018-2023    Any Comments and suggestions mail to:zhuzl@cqu.edu.cn   渝ICP备19006517号

渝公网安备 50010602502065号