SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO05894  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA002779
Annotation
PREDICTED:_FACT_complex_subunit_spt16_isoform_X2_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 3.932
 

Sequence

CDS
ATGTCTAATATATCATTGGACAAAGAGACGTTTTATCGTCGCATGAAAAAGCTGTATGCGACCTGGAAGGCTGTAGCTTCAGATCCTAAGAGTGATGATGCCCTGTCAAAGGTGGATTGCTTAGTGTCGTGTGTAGGAGTAGATGAAGAGACACTCTACAGCAAATCAACATCACTTCAGACATGGCTGTTTGGATATGAGTTACCTGACACAATCACTGTCTTAACAGAGCATAGCATGTGTTTTTTAGCCAGTAAGAAGAAGATTGAATTCCTGAGACAAATAGAAAATGGTAAAGATGAAACTGAATTGCCCCCAGCAAAACTTCTTATTAGAGACAGAAATGACAAAGACAAGGAAAACTTCAACAAACTTCTCCAAGAAATAAAGAAATCAAAATCAGGCAAGACACTGGGTATTTTCGTGAAAGACAATTATCCAGGTGAATTTTGTGAAAGTTGGAAAGCAGTTCTGAAGGGAGAGAAGTTTGAAAATGTCGATGTCAGTTCAGCGATTGCATTATTAATGGCGCCAAAAGAAGACTCTGAAATTATTACAATAAAAAAAGCATGTCTGGTCACAGTGGATGTCTTCACAAAATACTTAAAAGATCAGATAATGGAAATTATTGATTCAGATAAGAAAGTCAAACATTCAAAACTTGCTGAAGGTGTGGAAACAGCAGTTTCAGATAAGAAATATGTAACAGGAGTCGATACAAGTCAAGTTGACATGTGTTATCCTCCTATTATACAGTCAGGCGGACACTATAGTTTGAAATTCAGTGCAGTATCTGATAAAAACCACTTACACTTTGGCGCCATAGTATGTTCACTAGGTGCTAGATACAAATCATATTGTTCGAACATAGTCCGTACATTACTGGTCAACCCAACTGATGAAGTACAAAGTAATTACAATTTCTTGTTAAATATTGAAGAAGAGGTGATGAAGAGTCTTGTAGCTGGAGCGAAATTATCTACAGTTTATGAAGCTGGTCTAGCGTTAGCCAAGAAAGAGAAACCTAACTTAGTTGAAAATCTCACTAAGAGTTTTGGATTCGCTATGGGTATAGAATTTCGTGAAAGTTCCATTATTATTGGACCTAAAACAAATGTTACCGCGAAAAAAGGAATGGTCTTCAACATAAACATTGGCTTGGCGAACTTAACAAACAGTAATGCCTCAGATAAGGAGGGGAAGACATACGCGCTCTTCATTGGTGACACAGTATTAGTTAACGAAGAGCAGCCAGCGTCTCTACTAACACAGTCTAAGAAAAAAGTAAAAAATATAGGAATATTCTTGAAAGATGACGATGAAGAAGAAGAAGAGGAGAAAGAAAACAAGACTGAAATACTCGAAAATGGAGGTAGAGGCAAAAGGACTGCAGTGATTGAATCGAAATTGAGAACAGAGCATTCATCTGAGGAAAAACGTAAGGAGCATCAGCGTGAACTTGCTATATCTTTGAATGAAAAGGCCAAAGAAAGATTAGCCAAACAGTCGACCGGTAAAGATACAGAAAAACTAAGGAAAAGCACAGTTTCATACAAGAGTATTAGTCAGATGCCACGTGAGAATGAAGTTAAAGAATTAAAATTATATGTCGATCGTAAATACGAAACAGTAATCCTGCCAATATTCGGTGTCCCAGTACCATTCCATATATCTACAATTAAGAACATCTCGCAGTCAGTGGAAGGCGATTACACGTACCTTAGAATTAACTTTTTCCATCCCGGCGCCACTATGGGCAGGAATGAAGGCGGGAATTACTCTCAACCGGACGCCACCTTCGTTAAGGAAGTTACATACCGAAGTACAAACACAAAAGAACCGGGTGAGATATCGCCGCCTTCGTCAAACTTGAACACTGGATTTAGACTTATTAAAGAAGTACAGAAAAAATTCAAAACCAGAGAAGCAGAAGAACGTGAAAAGGAAGATTTGGTCAAACAGGACACGTTAATATTATCACAGAACAAAGGAAATCCTAAGTTAAAAGATTTGTACATACGTCCCAATATTGTTACGAAGAGAATGAGTGGTTCATTAGAAGCTCACACAAACGGCTTTAGATTCACATCGGTACGAGGCGATAAAGTGGACATTTTGTACAATAATATAAAGAATGCATTCTTTCAACCTTGTGATGGAGAAATGATTATACTTTTACATTTCCATTTGAAACATGCCATTATGTTTGGTAAAAAAAAGCATGTGGACGTGCAATTTTACACCGAAGTCGGTGAGATAACCACAGACTTAGGAAAGCATCAACACATGCACGACCGCGACGACCTCGCCGCCGAGCAGAGCGAACGGGAGCTGAGACACAAACTGAAGGTGGCCTTCAAGAGCTTCTGTGAACGAGTCGAGAACATGACCAAGCAAGAAGTCGAGTTCGATACACCTTTCAGAGAGCTTGGTTTCCCTGGAGCTCCATATCGGAGTACAGTTTTACTGCAGCCTACCTCCGGAGCCCTTGTCAATCTTACTGAATGGCCACCATTCGTGATTGCATTAGAAGATGTAGAGCTCGTCCACTTTGAGAGAGTACAATTTCACCTCAAAAATTTCGATATGGTCTTCGTATTTAAGGACTACGCCAAGAAAGTGGCCATGGTTAATGCCGTGCCTATGGACATGCTGGATCATGTCAAAGAATGGTTGAATTCTTGTGATATCCGGTACTCGGAGGGTATACAATCGTTGAACTGGACCAAAGTTATGAAAACTATAACAGATGACATTGAGGGCTTCTTCGAAAATGGTGGCTGGTCATTTTTGGATCCAGAATCTGATGGTGAAAATGAACAAGAGGAGGAAGATAGTGAAGATGAAGATGAAGCGTACGAGCCTACGGACGCTGAGTCTGATGAATCTGAAGGGTCTGACTATGATTCTGAGGCGTCTGATGAATCTGACGCTTCGGGTGATAGTGAAGAGGAAGACGAAGAATCCGGTAAAGACTGGTCAGATTTAGAGCGGGAAGCTGCCGAAGAGGATAAAAAAGACCGCAACTTCGATCGAGATGACTTCGACCGGAAACGTAAAGGACGAAACCAACAACGCTCGTACGACTCTGATGAGGGAGCCGCCAAGAAAAGCAAACATGACAAGTCTAATCATAAAAGTTCTAGTTCAAACCACAAAAGCTCTAGTTCCAATCATAAAAGTTCGAGCTCAAACCATAAGAGCTCCAGTCATAAAAGCCCTTCAAAGAACAGTAGCAGCCCTTCCAAGAACCGGGATAAGCACCACAAATCATCCCACCATGATCGACACCACAAGAGTGACCATAAGTCCTCTAGTAAAGACAAAGACAAGAAACATTCTAGTGACCATAAATCACACAAACGGTCACGCGATGACAGCAGAGAACACGGCAACAGCGCAAAGAAAGCGAAAAAATAA
Protein
MSNISLDKETFYRRMKKLYATWKAVASDPKSDDALSKVDCLVSCVGVDEETLYSKSTSLQTWLFGYELPDTITVLTEHSMCFLASKKKIEFLRQIENGKDETELPPAKLLIRDRNDKDKENFNKLLQEIKKSKSGKTLGIFVKDNYPGEFCESWKAVLKGEKFENVDVSSAIALLMAPKEDSEIITIKKACLVTVDVFTKYLKDQIMEIIDSDKKVKHSKLAEGVETAVSDKKYVTGVDTSQVDMCYPPIIQSGGHYSLKFSAVSDKNHLHFGAIVCSLGARYKSYCSNIVRTLLVNPTDEVQSNYNFLLNIEEEVMKSLVAGAKLSTVYEAGLALAKKEKPNLVENLTKSFGFAMGIEFRESSIIIGPKTNVTAKKGMVFNINIGLANLTNSNASDKEGKTYALFIGDTVLVNEEQPASLLTQSKKKVKNIGIFLKDDDEEEEEEKENKTEILENGGRGKRTAVIESKLRTEHSSEEKRKEHQRELAISLNEKAKERLAKQSTGKDTEKLRKSTVSYKSISQMPRENEVKELKLYVDRKYETVILPIFGVPVPFHISTIKNISQSVEGDYTYLRINFFHPGATMGRNEGGNYSQPDATFVKEVTYRSTNTKEPGEISPPSSNLNTGFRLIKEVQKKFKTREAEEREKEDLVKQDTLILSQNKGNPKLKDLYIRPNIVTKRMSGSLEAHTNGFRFTSVRGDKVDILYNNIKNAFFQPCDGEMIILLHFHLKHAIMFGKKKHVDVQFYTEVGEITTDLGKHQHMHDRDDLAAEQSERELRHKLKVAFKSFCERVENMTKQEVEFDTPFRELGFPGAPYRSTVLLQPTSGALVNLTEWPPFVIALEDVELVHFERVQFHLKNFDMVFVFKDYAKKVAMVNAVPMDMLDHVKEWLNSCDIRYSEGIQSLNWTKVMKTITDDIEGFFENGGWSFLDPESDGENEQEEEDSEDEDEAYEPTDAESDESEGSDYDSEASDESDASGDSEEEDEESGKDWSDLEREAAEEDKKDRNFDRDDFDRKRKGRNQQRSYDSDEGAAKKSKHDKSNHKSSSSNHKSSSSNHKSSSSNHKSSSHKSPSKNSSSPSKNRDKHHKSSHHDRHHKSDHKSSSKDKDKKHSSDHKSHKRSRDDSREHGNSAKKAKK

Summary

EMBL
BABH01019158    BABH01019159    BABH01019160    KZ149998    PZC75378.1    ODYU01012212    + More
SOQ58401.1    GAIX01005197    JAA87363.1    AGBW02014216    OWR42080.1    KQ459302    KPJ01699.1    KQ980304    KYN16801.1    KZ288201    PBC33546.1    KQ982254    KYQ58639.1    ADTU01018467    ADTU01018468    KK107020    EZA62602.1    GL888176    EGI65947.1    GEZM01023411    GEZM01023410    JAV88403.1    KQ434783    KZC04875.1    LJIG01022714    KRT79094.1    KQ976465    KYM84289.1    GFDF01001126    JAV12958.1    GL764146    EFZ18248.1    GANO01000785    JAB59086.1    CVRI01000061    CRL04111.1    GBYB01006232    JAG75999.1    GBYB01006231    JAG75998.1    KQ461175    KPJ07910.1    KQ971343    EFA04061.1    CRL04112.1    KQ981820    KYN35296.1    KK852473    KDR23156.1    NNAY01001504    OXU23767.1    NEVH01016298    PNF25942.1    PNF25941.1    ADMH02002207    ETN57813.1    ATLV01024512    KE525352    KFB51536.1    UFQT01002094    SSX32650.1    CH477810    EAT36003.1    GGFJ01001190    MBW50331.1    JXUM01124927    KQ566886    KXJ69752.1    GFDL01001719    JAV33326.1    GGFK01004963    MBW38284.1    AAAB01008807    EAA04225.5    AXCN02000568    GFDL01015032    JAV20013.1    UFQS01001174    UFQT01001174    SSX09388.1    SSX29290.1    AXCM01007401    GEDC01006355    JAS30943.1    GEDC01004596    JAS32702.1    KY285063    ATP16166.1    KQ414705    KOC63193.1    GL451188    EFN79862.1    KA645178    AFP59807.1    GBXI01001115    JAD13177.1    GBXI01010936    JAD03356.1    KA649221    AFP63850.1    JRES01001294    KNC23873.1    GDHF01002243    GDHF01002043    JAI50071.1    JAI50271.1    GDHF01023114    GDHF01009431    JAI29200.1    JAI42883.1    GAKP01016173    GAKP01016172    JAC42780.1    GDHF01030991    GDHF01024209    JAI21323.1    JAI28105.1    GDHF01015273    GDHF01002719    JAI37041.1    JAI49595.1    CCAG010000676    GAKP01016170    GAKP01016169    JAC42783.1    GECZ01001255    JAS68514.1    JXJN01005529    APCN01003635    CH940647    EDW68882.1    KRF84060.1    APGK01037730    APGK01037731    KB740948    KB632364    ENN77450.1    ERL93546.1    CH933816    EDW17090.1    LBMM01001250    KMQ96643.1    CH916366    EDV96755.1    CH479188    EDW40568.1    KRG07603.1    CH379069    EDY73564.1    GAMC01009021    JAB97534.1    QOIP01000006    RLU21260.1    KRT07854.1    CP012525    ALC43184.1    CH902618    EDV38748.1    ACPB03022602    ACPB03022603   
Pfam
PF00557   Peptidase_M24        + More
PF08512   Rtt106
PF08644   SPT16
PF14826   FACT-Spt16_Nlob
PF08423   Rad51
PF13359   DDE_Tnp_4
Interpro
IPR033825   Spt16_M24        + More
IPR029148   FACT-Spt16_Nlobe       
IPR011993   PH-like_dom_sf       
IPR013953   FACT_Spt16       
IPR029149   Creatin/AminoP/Spt16_NTD       
IPR036005   Creatinase/aminopeptidase-like       
IPR040258   Spt16       
IPR013719   DUF1747       
IPR000994   Pept_M24       
IPR027417   P-loop_NTPase       
IPR020588   RecA_ATP-bd       
IPR013632   DNA_recomb/repair_Rad51_C       
IPR027806   HARBI1_dom       
SUPFAM
SSF55920   SSF55920        + More
SSF52540   SSF52540       
Gene 3D
PDB
4Z2N     E-value=3.68686e-137,     Score=1255

Ontologies

Topology

Length:
1139
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00319
Exp number, first 60 AAs:
2e-05
Total prob of N-in:
0.00015
outside
1  -  1139
 
 

Population Genetic Test Statistics

Pi
212.906001
Theta
181.07814
Tajima's D
0.631728
CLR
0.371382
CSRT
0.549672516374181
Interpretation
Uncertain
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