Silkworm Genome Informatics Database

Gene

KWMTBOMO05887

Pre Gene Modal

BGIBMGA013332

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr10(+):13472566-13476294 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 2.111 Nuclear Reliability : 1.962

CDS

ATGCAGCTCGGTCGCCCTCACAACCCAGCCACTGTTACGAGGACCATGGTGGATTGGAATAAGCTGGGCACGTGCCTAGCCGAAGCCGCTCCGCCAATCCTCCCTTACGGCCCGGATTCGAATCTATCCCCCGAGGACACCGTCGAATCCATAAACATCATTACCGATCACATCTCTTCCGCGATCATTAGATCTTCAAAAGAAGTCGATGTGGAGGACAGCTTCCACCGCATCAGACTGTCCTCCGAACTTAGGAATCTCTTAAGAGTTAGGAACGCGGCAATCCGGGCCTACGATCGTCTTCCCACGCATTCAAACTGGATTCGGATGCGTCGTCTACAACGCGAAGTCCACTCCCGCCTAAGTGACGCGCGTAACGATAATTGGCATAGTTATTTAGAACAACTCGCGCCCTCCCACCAAGCATACTGGCGACTAGCTAGGACTCTCAAATCCGAAACTACCGCTACTATGCCTCCCCTCGTACGCCCTTCAGGCCAACCACCGGCATTCGATGACGATGACAAGGCTGAGCTGCTGGCCGATGCACTGCAAGAGCAGTGCACCACCAGCACTCAACACGCGGACCCCGAACACACCGAGTTAGTCGACAGGGAGGTCGAGCGCAGAGCTTCCCTGCCGCCCTCGGACGCGTTACCCCCCATTACCACTGACGAAGTTAGAGACGCGATCCACAACCTCCAACCTAGGAAGGCACCCGGCTCCGACGGCATCCGCAACCGCGCGCTAAAACTCTTGCCAGTCCAACTGATAGCAATGTTGGCTACAATTTTAAATGCCGCTATGACGCACTGCATCTTTCCCGCGGTGTGGAAAGAAGCGGACGTTATCGGTATACATAAGCCGGGCAAACCGACAAACGAAACTTCTAGTTACCGTCCGATTAGTCTCCTCCCGACGATAGGAAAAATTTACGAACGGCTCCTTAGGAAACGCCTCTGGGATTTTGTTACCGCGAACAAAATTCTCATAGACGAACAGTTCGGATTCCGCTCTAAACACTCGTGCGTACAACAAGTGCACCGCCTCACGGAGCACATCCTGATAGGACTAAATAGGCGTAAACAAATCCCGACCGGCGCCCTCTTCTTCGACATCGCGAAGGCGTTCGACAAAGTCTGGCACAACGGTTTAATTTACAAACTGTACAACATGGGAGTGCCAGACAGACTCGTGCTCATCATACGAGACTTCTTGTCGAACCGTTCGTTTCGATATCGAGTAGGGGGAACTCGTTCTCGTCCCCGTCAACTGACTGCCGGAGTCCCGCAAGGCTCCGCGCTCTCCCCGTTATTATTTAGTTTGTATATCAATGATATACCCCGGTCTCCGGAGACCCATCTAGCGCTCTTCGCCGATGACACGGCTATCTACTACTCGTGTAGGAAGATGTCGCTGCTTCATCGGCGACTCCAGATCGCAGTAGCCACCATGGGACAGTGGTTCCGGAAGTGGCGCATCGACATCAACCCCACGAAAAGCACAGCGGTGCTCTTCAAAAGGGGTCGCCCTCCGAATACCACTTCGAGCATCCCACTCCCTAATAGGCGCGCAAACACCTCCGCCGTTAGCCCCGTCACTCTCTTTGGCCAGCCCATACCGTGGGCCTCGCAGGTCAAATACCTAGGCGTCACCCTCGACAGAGGGATGACATTCCGTCCCCATATTAAAACGATACGCGACCGTGCCGCCTTCATATTAGGACGTCTCTACCCTATGCTTTGCAAGCGAAGCAAACTGTCCCTCCGTAATAAGGTAACTCTCTACAAAACTTGCATACGCCCCGTTATGACGTATGCAAGCGTAGTGTTCGCTCACGCAGCCCGCACCAACTTGAAGCCCCTTCAGGTTATTCAATCCCGATTCTGCAGGATAGCCGTCGGAGCACCATGGTTCCTGAGGAACGTGGATCTCCACGATGACCTGGAGCTTGACTCTGTCAGTAAGTATCTACAGTCGGCATCGCTGCGCCATTTTGAGAAGGCGGCACGACATGAGAACCCTCTCATCGTAGCCGCTGGAAATTACATACCCGACCCAGTAGACCGAATGATGAATGTACTGCAAAGTAGTTTGTCAGACTTGTCGGAGCACTTTTACAAGAAGATGGCTGATTTTGAGGCAAAGCTTCATCCACAGTCAGTATCATCTCCCTCAACATCTTCTCCGGACCTGGCTGCTGAGTTTGCAGTGTTTCGAGCATTTATCACTGAGGCTGTGTCGGGTCTACAAAAACAGATTGAGGTTCTGTCTCACAAACTTGATCACATGGAGATGCATGGCCGCAGGAAGATGTTGCTTTTCCACGGGGTGGTTGAACAGAAACAAGAAAATACATTCGAAATTGTGGCCGACATATTGAAAAAACATTTTTCATTAAATACTGTTTCAGTTCACGATATTAAATGGTGTAACAGAATGAGACAGCCTTCTGCCAGGGAAAGGGCACGACCGATCTTGGTGAAGTTCCATGATTTTAGTTTCCGCAATAAGATCTGGTTTAGTAAGTCTCAATTAAAAAGGACTGGGATAACGGTTTCCGAATTTCTTACGAAACAACGGCACGATGTTTTCATGGCAGCACGGGACAAGTTTGGAGTAACGAACTCGTGGACTAAAGAAGGCACAGTTTATGTTCTCGGCTCAGATGGCAAAAGACATCGGGTGTACTGCCGTAGACAACTGATTGAAATTGATAGGCACACCGTGGAGACTGTTCCTGTACAAACTGCCGCAAAACCAAACACGGCGTCTGTTGCACCAAAGCTTAAGCGTGCGGCCGCCCGTAAATGA

Protein

MQLGRPHNPATVTRTMVDWNKLGTCLAEAAPPILPYGPDSNLSPEDTVESINIITDHISSAIIRSSKEVDVEDSFHRIRLSSELRNLLRVRNAAIRAYDRLPTHSNWIRMRRLQREVHSRLSDARNDNWHSYLEQLAPSHQAYWRLARTLKSETTATMPPLVRPSGQPPAFDDDDKAELLADALQEQCTTSTQHADPEHTELVDREVERRASLPPSDALPPITTDEVRDAIHNLQPRKAPGSDGIRNRALKLLPVQLIAMLATILNAAMTHCIFPAVWKEADVIGIHKPGKPTNETSSYRPISLLPTIGKIYERLLRKRLWDFVTANKILIDEQFGFRSKHSCVQQVHRLTEHILIGLNRRKQIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFLSNRSFRYRVGGTRSRPRQLTAGVPQGSALSPLLFSLYINDIPRSPETHLALFADDTAIYYSCRKMSLLHRRLQIAVATMGQWFRKWRIDINPTKSTAVLFKRGRPPNTTSSIPLPNRRANTSAVSPVTLFGQPIPWASQVKYLGVTLDRGMTFRPHIKTIRDRAAFILGRLYPMLCKRSKLSLRNKVTLYKTCIRPVMTYASVVFAHAARTNLKPLQVIQSRFCRIAVGAPWFLRNVDLHDDLELDSVSKYLQSASLRHFEKAARHENPLIVAAGNYIPDPVDRMMNVLQSSLSDLSEHFYKKMADFEAKLHPQSVSSPSTSSPDLAAEFAVFRAFITEAVSGLQKQIEVLSHKLDHMEMHGRRKMLLFHGVVEQKQENTFEIVADILKKHFSLNTVSVHDIKWCNRMRQPSARERARPILVKFHDFSFRNKIWFSKSQLKRTGITVSEFLTKQRHDVFMAARDKFGVTNSWTKEGTVYVLGSDGKRHRVYCRRQLIEIDRHTVETVPVQTAAKPNTASVAPKLKRAAARK

Uniprot

Q9XXW0 Q93137 Q9BPQ0 A0A0N1PFV1 O96546 A0A1Y1NA23 + More
A0A139WA11 A0A139W8G9 V5GNJ2 A0A2S2QEE0 A0A2J7R7D0 A0A2S2Q352 J9KCZ4 A0A2S2P698 A0A2J7Q0Q6 A0A2J7R2E1 A0A2J7QFL0 A0A2J7RKP3 A0A1Y1KUU7 A0A2J7R6U1

Pubmed

10333566 26354079 10380107 28004739 18362917 19820115 + More

EMBL

AB018558 BAA76304.1 U07847 AAA17752.1 AB055391 BAB21761.1 + More
KQ459265 KPJ02064.1 AF081103 AAC72921.1 GEZM01008457 JAV94772.1 KQ971729 KYB24751.1 KQ973342 KXZ75569.1 GALX01005299 JAB63167.1 GGMS01006359 MBY75562.1 NEVH01006736 PNF36716.1 GGMS01002955 MBY72158.1 ABLF02008463 GGMR01012305 MBY24924.1 NEVH01019964 PNF22161.1 NEVH01007838 PNF34986.1 NEVH01014858 PNF27387.1 NEVH01002716 PNF41415.1 GEZM01074951 JAV64378.1 NEVH01006754 PNF36554.1

Proteomes

UP000053268 UP000007266 UP000235965 UP000007819

PRIDE

Q9XXW0 Q93137 Q9BPQ0

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF07530   PRE_C2HC

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase
IPR036691   Endo/exonu/phosph_ase_sf
IPR006579   Pre_C2HC_dom

SUPFAM

SSF56219 SSF56219

Gene 3D

3.60.10.10

ProteinModelPortal

Q9XXW0 Q93137 Q9BPQ0 A0A0N1PFV1 O96546 A0A1Y1NA23 + More
A0A139WA11 A0A139W8G9 V5GNJ2 A0A2S2QEE0 A0A2J7R7D0 A0A2S2Q352 J9KCZ4 A0A2S2P698 A0A2J7Q0Q6 A0A2J7R2E1 A0A2J7QFL0 A0A2J7RKP3 A0A1Y1KUU7 A0A2J7R6U1

PDB

6AR3 E-value=0.0133543, Score=94

KEGG

105841764 no KO assigned | (RefSeq) uncharacterized LOC105841764

GO

GO:0003964 GO:0004519

Length:

937

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.704949999999998

Exp number, first 60 AAs:

0.00039

Total prob of N-in:

0.02570

outside

1 - 937

Pi

128.030844

Theta

138.289503

Tajima's D

2.127303

CLR

184.838951

CSRT

0.905704714764262

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree