SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO05885  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA002933
Annotation
Vesicle_transport_protein_SEC20_[Papilio_machaon]
Location in the cell
Nuclear   Reliability : 3.47
 

Sequence

CDS
ATGTTCTGCTTTGCACCAAATATTCTCAAATATGAAGTAAAATACACCACAATGGCCCTCAAAATGGATTTGAGTCCAACGGACCCATATCATCAATCGTTGTTTGCAAAATTAGAAAATCCTGATGTGGTCTATCAGAATTTCGTGAAGAGATTGGCTAAGTATCATTTTCAAGTCAAAGCAATTATCCAGGATATCCTGGAATGCAGGGAGTCGATGGAGAAATTAAATGAGTTAAATGAAAAAGGAAGGGCAAAAATAACGGAAGTACGAGAGGAATTAGAAAATTTATACCTGTATGGTAAAGAAACAGGGGATACAAAATATGATACTGAATTAGAATCACAGAGGCACCTTTTAGCTTGTCTCCTTAAGGAATTTAAAGATGCCAATATAAATAGTATGTTTGCTATTGAAAAGGCACAAAGAGAAGATTTATTAAAATGTAGTGATAATGAGAAGTCATCAGTCCGACAAAGAAAGAAAAAGATGGATAAGGATGGATTGGTCAAAATGTCATCAGGTGTGACAGAGCAATTACTTTCCGTAAGCAGGCAGCTAGCGGACACCACACAAAAGAGTCAAAATACTTTGGATAATTTGGTTTCATCTAGTTCAACAGTGCATGGAACACAATCGGAATTAGAGAATACAGCAGGAACGATTACGCAATCGAGCAAACTACTGAAGAAATACGGACGTAGAGAATTTACGGACAAAGTGATCATGTTTTTTGCATTTTTATTCTTTTTGGCGGTGTGCCTGTACATTGTACAGAAGAGGCTTTTTTAA
Protein
MFCFAPNILKYEVKYTTMALKMDLSPTDPYHQSLFAKLENPDVVYQNFVKRLAKYHFQVKAIIQDILECRESMEKLNELNEKGRAKITEVREELENLYLYGKETGDTKYDTELESQRHLLACLLKEFKDANINSMFAIEKAQREDLLKCSDNEKSSVRQRKKKMDKDGLVKMSSGVTEQLLSVSRQLADTTQKSQNTLDNLVSSSSTVHGTQSELENTAGTITQSSKLLKKYGRREFTDKVIMFFAFLFFLAVCLYIVQKRLF

Summary

EMBL
BABH01019173    RSAL01000003    RVE54792.1    GDQN01009714    JAT81340.1    NWSH01004649    + More
PCG64819.1    KZ149998    PZC75369.1    KQ461175    KPJ07902.1    KQ459302    KPJ01706.1    GDQN01000455    JAT90599.1    ODYU01009104    SOQ53282.1    AGBW02014216    OWR42089.1    GAIX01006203    JAA86357.1    KQ971371    EFA09888.1    KC632374    AGM32188.1    AJVK01021187    GEBQ01022498    JAT17479.1    GFDF01004004    JAV10080.1    GECU01008720    JAS98986.1    JXJN01019080    GAKP01003040    GAKP01003039    JAC55912.1    CH933806    EDW16875.2    GBHO01008265    GBRD01010631    GDHC01020123    GDHC01005219    JAG35339.1    JAG55193.1    JAP98505.1    JAQ13410.1    GDHF01015650    JAI36664.1    CH964232    EDW80762.1    CH940656    EDW58343.1    GDHC01012431    JAQ06198.1    CH916373    EDV94668.1    GECZ01005610    JAS64159.1    KA648694    AFP63323.1    GBXI01017092    JAC97199.1    GEZM01066326    JAV67962.1    JRES01000007    KNC34918.1    CH902617    EDV43763.1    CH954181    EDV47959.1    GANO01001777    JAB58094.1    CH480821    EDW55026.1    CM000364    EDX11796.1    GAMC01003246    JAC03310.1    GDAI01001761    JAI15842.1    APGK01044468    KB741026    KB632309    ENN74932.1    ERL92095.1    AE014297    BT030855    AAF51945.1    ABV82237.1    CM000160    EDW97798.1    CH479179    EDW24767.1    CM000070    EAL27706.1    OUUW01000007    SPP82850.1    NEVH01017441    PNF24603.1    CP012526    ALC46074.1    CVRI01000010    CRK88985.1    CH477387    EAT42055.1    DS231903    EDS45134.1    BT127236    AEE62198.1    UFQS01000878    UFQT01000878    SSX07452.1    SSX27792.1    UFQT01004575    SSX35718.1    GFDL01008258    JAV26787.1    JXUM01141297    GAPW01003858    KQ569220    JAC09740.1    KXJ68713.1    GFDL01008379    JAV26666.1    GFDL01008433    JAV26612.1    GGMS01000978    MBY70181.1    GDKW01000828    JAI55767.1    ACPB03011791    GAHY01000668    JAA76842.1    KQ414617    KOC68307.1    LBMM01006354    KMQ90673.1    KK852710    KDR17970.1    KK107139    QOIP01000003    EZA57773.1    RLU24737.1    ABLF02021570    ADMH02001819    ETN61023.1    GL446946    EFN87045.1    GGFJ01008957    MBW58098.1    GGFL01006401    MBW70579.1    GBBI01001113    JAC17599.1    GGFL01006402    MBW70580.1    KQ982944    KYQ48908.1    PYGN01000304    PSN48876.1    AAZX01001625    GGFK01008981    MBW42302.1    GBYB01002699    JAG72466.1    NNAY01005274    OXU16801.1    KZ288338    PBC27833.1    AXCN02001229    KQ979608    KYN20366.1    GGFM01004199    MBW24950.1    KQ977574    KYN01886.1    AXCM01000049    GL888243    EGI63957.1   
Pfam
PF03908   Sec20
Interpro
IPR005606   Sec20        + More
IPR027027   GOSR2/Membrin/Bos1       

Ontologies

Topology

Length:
263
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
18.58133
Exp number, first 60 AAs:
0
Total prob of N-in:
0.13752
outside
1  -  240
TMhelix
241  -  258
inside
259  -  263
 
 

Population Genetic Test Statistics

Pi
36.592186
Theta
33.703487
Tajima's D
0.165121
CLR
0.249748
CSRT
0.417779111044448
Interpretation
Uncertain
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